Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015416

Physical Location & Seq

Genomic Coordinates Reverse (-)

21586219 .. 21589255

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAGGAGATAATACCGGATTTTCTTGAAGAGTGTGAATTTGTCGACACTTCACTAGCCGGAGATGATCTATTTGCCATCTTAGAGAGTCTTGAAGGTGCCGGAGAGATATCTCCGACAGCTGCATCTACACCTAAAGATGGAACCACAAGTTCCAAGGAGTTAGTTAAGGATCAAGATTATGAAAACTCATCTCCTAAGAGGAAAAAGCAAAGACTAGAAACCAGGAAAGAAGAGGACGAAGAAGAAGAAGACGGAGACGGAGAAGCAGAAGAAGATAATAAGCAAGATGGGCAACAAAAGATGTCTCATGTAACCGTGGAACGTAACCGGAGAAAGCAAATGAACGAGCACTTAACCGTTTTGCGTTCTCTTATGCCTTGTTTCTACGTCAAACGGGGGGACCAAGCATCGATCATAGGAGGAGTTGTGGAGTACATAAGCGAGTTACAACAAGTTCTCCAATCTTTGGAAGCCAAGAAACAACGTAAAACCTACGCCGAAGTCCTAAGCCCGAGAGTTGTCCCGAGCCCTCGTCCTTCACCGCCTGTTCTAAGCCCAAGAAAACCGCCTCTTAGCCCGCGCATCAACCACCACCAGATTCACCACCACCTACTTCTCCCTCCCATAAGTCCTCGAACACCTCAGCCAACAAGCCCATACCGGGCCATTCCACCGCAACTACCACTCATCCCACAGCCTCCGCTTCGCTCTTACAGCTCATTGGCCAGTTGCAGCAGCTTAGGAGATCCACCTCCATACTCTCCTGCTTCATCTTCTTCATCTCCTTCAGTTAGTAGTAACCATGAGAGTAGTGTGATCAATGAGCTTGTTGCTAACTCAAAATCGGCTTTGGCTGATGTGGAAGTGAAGTTTTCAGGAGCTAACGTGCTGCTCAAAACGGTGTCGCATAAGATCCCGGGACAAGTTATGAAGATAATTGCTGCTCTTGAAGATTTGGCTCTTGAGATTCTTCAGGTTAATATTAACACCGTCGACGAAACCATGCTTAATTCTTTCACCATCAAGATTGGAATTGAGTGCCAACTAAGTGCAGAAGAACTGGCTCAACAAATTCAGCAAACATTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0010374 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

HLH

Protein Analysis

364

Amino Acids

40.17

Weight (kDa)

5.2

Isoelectric Point (pI)

73.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	100 - 151	1.4e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53210 AT5G53210
fragaria_vesca	FvH4_7g31020
malus_domestica	MD01G1215200.v1.1 MD07G1285100.v1.1
prunus_persica	Prupe.2G307300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380101
rosa_laevigata	RLG00000026332
rosa_multiflora	Rmu_sc0001232.1_g000008
rosa_roxburghii	Rroxscaffold_4G00279700
rosa_rugosa	Rorug01G0417400
rosa_samantha	Rh1AG442600 Rh1BG397600 Rh1CG411000 Rh1DG428400
rosa_wichuraiana	Rw1G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccI	GTMKAC	2 cut(s)	45, 996
AccII	CGCG	1 cut(s)	583
AciI	CCGC	5 cut(s)	545, 569, 581, 677, 704
AclWI	GGATC	3 cut(s)	180, 743, 910
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	2 cut(s)	38, 1074
AcuI	CTGAAG	2 cut(s)	774, 959
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	140, 469, 664
AgsI	TTSAA	3 cut(s)	29, 95, 953
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	122, 720, 741, 829, 884
AluI	AGCT	5 cut(s)	122, 720, 741, 829, 884
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	252, 312
AlwI	GGATC	3 cut(s)	180, 743, 910
Ama87I	CYCGRG	3 cut(s)	514, 526, 919
AoxI	GGCC	2 cut(s)	666, 726
ApeKI	GCWGC	5 cut(s)	122, 735, 738, 892, 944
ApoI	RAATTY	2 cut(s)	38, 1074
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	403, 666
AsuC2I	CCSGG	3 cut(s)	665, 920, 921
AsuHPI	GGTGA	3 cut(s)	534, 596, 1012
AvaI	CYCGRG	3 cut(s)	514, 526, 919
AvaII	GGWCC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	5 cut(s)	109, 747, 750, 879, 931
BccI	CCATC	4 cut(s)	86, 134, 284, 1031
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	3 cut(s)	665, 920, 921
BcoDI	GTCTC	2 cut(s)	252, 312
BfaI	CTAG	3 cut(s)	56, 218, 1093
BisI	GCNGC	5 cut(s)	123, 736, 739, 893, 945
BlsI	GCNGC	5 cut(s)	124, 737, 740, 894, 946
Bme1390I	CCNGG	4 cut(s)	226, 665, 920, 921
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	3 cut(s)	514, 526, 919
BmgT120I	GGNCC	2 cut(s)	403, 666
BmiI	GGNNCC	3 cut(s)	100, 145, 404
BmrFI	CCNGG	4 cut(s)	226, 665, 920, 921
BmsI	GCATC	3 cut(s)	134, 419, 594
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	3 cut(s)	509, 645, 742
BpuEI	CTTGAG	1 cut(s)	986
BpuMI	CCSGG	3 cut(s)	665, 920, 921
Bsa29I	ATCGAT	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	156, 318, 919
BsaWI	WCCGGW	2 cut(s)	16, 330
BsaXI	ACNNNNNCTCC	6 cut(s)	414, 444, 444, 474, 873, 903
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 469, 664
Bse1I	ACTGG	2 cut(s)	729, 1068
BseBI	CCWGG	1 cut(s)	226
BseCI	ATCGAT	1 cut(s)	413
BseDI	CCNNGG	3 cut(s)	156, 318, 919
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	3 cut(s)	140, 469, 664
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	2 cut(s)	729, 1068
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	5 cut(s)	109, 747, 750, 879, 931
BsgI	GTGCAG	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	668, 728
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	3 cut(s)	514, 526, 919
BsiSI	CCGG	6 cut(s)	17, 60, 102, 331, 664, 920
BslFI	GGGAC	3 cut(s)	416, 509, 936
BslI	CCNNNNNNNGG	3 cut(s)	140, 469, 664
BsmAI	GTCTC	2 cut(s)	252, 312
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	3 cut(s)	416, 509, 936
BsnI	GGCC	2 cut(s)	668, 728
BsoBI	CYCGRG	3 cut(s)	514, 526, 919
Bsp1286I	GDGCHC	2 cut(s)	354, 533
Bsp143I	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
BspACI	CCGC	5 cut(s)	545, 569, 581, 677, 704
BspANI	GGCC	2 cut(s)	668, 728
BspCNI	CTCAG	1 cut(s)	658
BspDI	ATCGAT	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	100, 145, 404
BspPI	GGATC	3 cut(s)	180, 743, 910
BspT107I	GGYRCC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	729, 1068
BssECI	CCNNGG	3 cut(s)	156, 318, 919
BssMI	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	4 cut(s)	319, 361, 904, 994
Bst6I	CTCTTC	2 cut(s)	24, 228
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	8 cut(s)	82, 198, 509, 554, 575, 645, 742, 1049
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	690
BstFNI	CGCG	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	6 cut(s)	70, 175, 417, 751, 822, 918
BstMAI	GTCTC	2 cut(s)	252, 312
BstMBI	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 717
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	4 cut(s)	224, 663, 918, 919
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	5 cut(s)	109, 747, 750, 879, 931
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	748, 915
BstYI	RGATCY	2 cut(s)	748, 915
Bsu15I	ATCGAT	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	668, 728
BsuTUI	ATCGAT	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	581
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	403, 666
Cfr9I	CCCGGG	1 cut(s)	919
ClaI	ATCGAT	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	3 cut(s)	311, 806, 1006
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	8 cut(s)	82, 198, 509, 554, 575, 645, 742, 1049
DpnI	GATC	6 cut(s)	69, 174, 416, 750, 821, 917
DpnII	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	2 cut(s)	24, 228
EarI	CTCTTC	2 cut(s)	24, 228
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	774, 959
Eco88I	CYCGRG	3 cut(s)	514, 526, 919
EcoRII	CCWGG	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	314, 809, 1009
FaqI	GGGAC	3 cut(s)	416, 509, 936
FatI	CATG	3 cut(s)	310, 805, 1005
FauI	CCCGC	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	819
FblI	GTMKAC	2 cut(s)	45, 996
Fnu4HI	GCNGC	5 cut(s)	123, 736, 739, 893, 945
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	5 cut(s)	123, 736, 739, 893, 945
FspBI	CTAG	3 cut(s)	56, 218, 1093
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	5 cut(s)	123, 736, 739, 893, 945
HaeIII	GGCC	2 cut(s)	668, 728
HapII	CCGG	6 cut(s)	17, 60, 102, 331, 664, 920
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	3 cut(s)	314, 809, 1009
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HincII	GTYRAC	2 cut(s)	46, 997
HindII	GTYRAC	2 cut(s)	46, 997
HinfI	GANTC	3 cut(s)	88, 601, 970
HpaII	CCGG	6 cut(s)	17, 60, 102, 331, 664, 920
HphI	GGTGA	3 cut(s)	534, 596, 1012
Hpy166II	GTNNAC	2 cut(s)	46, 997
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	8 cut(s)	26, 92, 176, 526, 879, 950, 965, 1027
Hpy8I	GTNNAC	2 cut(s)	46, 997
Hpy99I	CGWCG	2 cut(s)	998, 1001
HpyAV	CCTTC	3 cut(s)	89, 549, 798
HpyCH4III	ACNGT	4 cut(s)	319, 361, 904, 994
HpyCH4IV	ACGT	4 cut(s)	325, 390, 487, 888
HpyCH4V	TGCA	4 cut(s)	4, 125, 735, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 717
HpyF3I	CTNAG	8 cut(s)	82, 198, 509, 554, 575, 645, 742, 1049
HpySE526I	ACGT	4 cut(s)	325, 390, 487, 888
Hsp92II	CATG	3 cut(s)	314, 809, 1009
HspAI	GCGC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
LmnI	GCTCC	1 cut(s)	881
Lsp1109I	GCAGC	5 cut(s)	109, 747, 750, 879, 931
LweI	GCATC	3 cut(s)	134, 419, 594
MaeI	CTAG	3 cut(s)	56, 218, 1093
MaeII	ACGT	4 cut(s)	325, 390, 487, 888
MaeIII	GTNAC	4 cut(s)	313, 326, 447, 800
MalI	GATC	6 cut(s)	69, 174, 416, 750, 821, 917
MboI	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
MflI	RGATCY	2 cut(s)	748, 915
MhlI	GDGCHC	2 cut(s)	354, 533
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	5 cut(s)	38, 939, 1012, 1035, 1074
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	140
Mox20I	TGGCCA	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	5 cut(s)	168, 356, 981, 987, 1011
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	6 cut(s)	17, 60, 102, 331, 664, 920
MspR9I	CCNGG	4 cut(s)	226, 665, 920, 921
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	292, 717
NciI	CCSGG	3 cut(s)	665, 920, 921
NdeII	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
NlaIII	CATG	3 cut(s)	314, 809, 1009
NlaIV	GGNNCC	3 cut(s)	100, 145, 404
PfeI	GAWTC	2 cut(s)	601, 970
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	124, 737, 740, 894, 946
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	100, 145, 404
PspPI	GGNCC	2 cut(s)	403, 666
PsuI	RGATCY	2 cut(s)	748, 915
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SalI	GTCGAC	2 cut(s)	44, 995
SaqAI	TTAA	5 cut(s)	168, 356, 981, 987, 1011
SatI	GCNGC	5 cut(s)	123, 736, 739, 893, 945
Sau3AI	GATC	6 cut(s)	67, 172, 414, 748, 819, 915
Sau96I	GGNCC	2 cut(s)	403, 666
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	4 cut(s)	226, 665, 920, 921
SduI	GDGCHC	2 cut(s)	354, 533
SfaNI	GCATC	3 cut(s)	134, 419, 594
SgrDI	CGTCGACG	1 cut(s)	995
SinI	GGWCC	1 cut(s)	403
SmaI	CCCGGG	1 cut(s)	921
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
Sse9I	AATT	5 cut(s)	38, 939, 1012, 1035, 1074
SsiI	CCGC	5 cut(s)	545, 569, 581, 677, 704
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	3 cut(s)	56, 218, 1093
StyD4I	CCNGG	4 cut(s)	224, 663, 918, 919
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	319, 361, 904, 994
TaiI	ACGT	4 cut(s)	328, 393, 490, 891
TaqI	TCGA	4 cut(s)	45, 413, 637, 996
TasI	AATT	5 cut(s)	38, 939, 1012, 1035, 1074
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	601, 970
Tru1I	TTAA	5 cut(s)	168, 356, 981, 987, 1011
Tru9I	TTAA	5 cut(s)	168, 356, 981, 987, 1011
TseI	GCWGC	5 cut(s)	122, 735, 738, 892, 944
TspDTI	ATGAA	5 cut(s)	198, 359, 762, 771, 947
TspGWI	ACGGA	2 cut(s)	270, 276
TspMI	CCCGGG	1 cut(s)	919
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	38, 1074
XmaI	CCCGGG	1 cut(s)	919
XmiI	GTMKAC	2 cut(s)	45, 996
XspI	CTAG	3 cut(s)	56, 218, 1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.