RchiOBHm_Chr1g0380101

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015416
Physical Location & Seq
Forward (+)
65866341 .. 65869154
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60340

Sequence Viewer

Length: 1098 bp
ATGGATGATCATCTTTTGTCTGAATTTTTCGAAGAACACGATCACTGCTACGGTGGCGGCGATGCTAGCAGCTTGGCTCCCGGTGATGATCTTTTTAGCATATTGGATAGCTTAGATGCAGGGTCACTCATGGATAGTTTTCCTCCGCCAACACCGTGCGATGAACTCGTGTTTAGCTCATCAAAAGAAGGAGGGATAGAAGTGTCACCGGAGCTCGAAACTTCACCAAAATCATGCAAGAGAGTGAAGCTTTCAAAAGAGGCTTCCCCAGGCGGGACAGGTTCTAATTCTGACGATGGACAGCAAAGGATGTCGCATATAACGGTGGAGCGCAACCGGAGGAAGCAAATGAACGAGCACTTGACAGTCTTGCGCTCTCTCATGCCTTGTTTCTATGTCAAAAGAGGGGATCAAGCATCAATTATTGGAGGGGTGGTTGACTACATCAATGAATTGCAGCAAGTTCTTCAATCACTAGAGGCCAAGAAGCAACGAAAGGCATACAGTGAAGTGTTAAGCCCTAGGCTACCAGTTTCAAGTAGTCCCAGATTACCTTCATCACCACTAGTACTTAGCCCTAGAAAACCCCCAATAAGTCCTTTGGCAAGTCCCAGAATCAGCTGCAGCAGCTTGCCTATTAGTCCAAGAACCCCACAGCCAACCAGCCCTTACAAGCCTCCCAGGACGACGTCGTTACAACAGTTGCAACAACCAGTTTACCTCTCTAGTCCAACCATAACTGCAGCTAGCTCATCACTTGAACCATCTCCTTCAAATTCGTCGACTACTAATTTTTCCTCCGTTAATCATGTTATTGACAATCTCAATGAGCTTTTTGCCAATTCTAAGTCCGCCATTGCCCATGTGGAAGTGAAGTTTTCAGGTGCAAATGTTCTTTTAAACACGGTGTCTCCTCGGATACCAGGACAAGCTCTCAAAATCATTTCGGCTCTCGAAGATCTTTCCCTCGAGATTCTCCACGTCGAAATAAAGACGGAAGACGAAAAGATGCTTAATTCCTTCACCATCAAGATTGGAATTGAATGCCAACTTAGTGCTGAGGAACTCGCTCACCAAATTCAGCAAACATTCCGCTAA

Protein Analysis

365

Amino Acids

39.76

Weight (kDa)

5.65

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 102 - 153 4.9e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53210 AT5G53210
fragaria_vesca FvH4_7g31020
malus_domestica MD01G1215200.v1.1 MD07G1285100.v1.1
prunus_persica Prupe.2G307300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380101
rosa_laevigata RLG00000026332
rosa_multiflora Rmu_sc0001232.1_g000008
rosa_roxburghii Rroxscaffold_4G00279700
rosa_rugosa Rorug01G0417400
rosa_samantha Rh1AG442600 Rh1BG397600 Rh1CG411000 Rh1DG428400
rosa_wichuraiana Rw1G038430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 782
AciI CCGC 5 cut(s) 57, 146, 273, 852, 1093
AclWI GGATC 1 cut(s) 417
AcsI RAATTY 3 cut(s) 23, 775, 1077
AcyI GRCGYC 1 cut(s) 689
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 6 cut(s) 255, 470, 537, 761, 774, 1043
AhlI ACTAGT 1 cut(s) 565
AjiI CACGTC 1 cut(s) 982
AjnI CCWGG 3 cut(s) 268, 680, 922
Alw21I GWGCWC 2 cut(s) 216, 360
Alw26I GTCTC 1 cut(s) 915
AlwI GGATC 1 cut(s) 417
Ama87I CYCGRG 1 cut(s) 968
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 6 cut(s) 69, 457, 621, 624, 627, 743
ApoI RAATTY 3 cut(s) 23, 775, 1077
AspA2I CCTAGG 1 cut(s) 521
AspLEI GCGC 2 cut(s) 333, 375
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 6 cut(s) 95, 198, 216, 552, 1015, 1064
AsuII TTCGAA 1 cut(s) 30
AsuNHI GCTAGC 2 cut(s) 65, 746
AvaI CYCGRG 1 cut(s) 968
AvrII CCTAGG 1 cut(s) 521
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 216, 360
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 6 cut(s) 81, 469, 608, 636, 639, 755
BccI CCATC 3 cut(s) 290, 772, 1034
BciT130I CCWGG 3 cut(s) 270, 682, 924
BciVI GTATCC 1 cut(s) 912
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 915
BcuI ACTAGT 1 cut(s) 565
BfaI CTAG 7 cut(s) 66, 476, 522, 566, 579, 726, 747
BfmI CTRYAG 2 cut(s) 622, 741
BfuI GTATCC 1 cut(s) 912
BglII AGATCT 1 cut(s) 958
BisI GCNGC 7 cut(s) 58, 70, 458, 622, 625, 628, 744
BlnI CCTAGG 1 cut(s) 521
BlsI GCNGC 7 cut(s) 59, 71, 459, 623, 626, 629, 745
BmcAI AGTACT 1 cut(s) 570
Bme1390I CCNGG 4 cut(s) 81, 270, 682, 924
BmeT110I CYCGRG 1 cut(s) 968
BmgBI CACGTC 1 cut(s) 982
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 4 cut(s) 81, 270, 682, 924
BmsI GCATC 4 cut(s) 52, 106, 425, 999
BmtI GCTAGC 2 cut(s) 69, 750
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 1059
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 689
BsaJI CCNNGG 4 cut(s) 268, 521, 680, 914
BsaWI WCCGGW 2 cut(s) 208, 336
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 895, 925
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 530, 713
Bse3DI GCAATG 1 cut(s) 855
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 270, 682, 924
BseDI CCNNGG 4 cut(s) 268, 521, 680, 914
BseGI GGATG 2 cut(s) 10, 315
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 1 cut(s) 1050
BseNI ACTGG 2 cut(s) 530, 713
BseRI GAGGAG 1 cut(s) 903
BseXI GCAGC 6 cut(s) 81, 469, 608, 636, 639, 755
BshFI GGCC 1 cut(s) 482
BsiHKAI GWGCWC 2 cut(s) 216, 360
BsiHKCI CYCGRG 1 cut(s) 968
BsiSI CCGG 3 cut(s) 81, 209, 337
BslFI GGGAC 3 cut(s) 289, 528, 594
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 915
BsmFI GGGAC 3 cut(s) 289, 528, 594
BsmI GAATGC 1 cut(s) 1049
BsnI GGCC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 968
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 216, 360
Bsp143I GATC 5 cut(s) 7, 40, 88, 409, 958
BspACI CCGC 5 cut(s) 57, 146, 273, 852, 1093
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 1051
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 2 cut(s) 626, 745
BspOI GCTAGC 2 cut(s) 69, 750
BspPI GGATC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 2 cut(s) 530, 713
BssECI CCNNGG 4 cut(s) 268, 521, 680, 914
BssMI GATC 5 cut(s) 7, 40, 88, 409, 958
BssNI GRCGYC 1 cut(s) 689
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 270, 682, 924
Bst4CI ACNGT 7 cut(s) 53, 156, 325, 367, 506, 702, 907
BstACI GRCGYC 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 67, 632, 748
BstDEI CTNAG 5 cut(s) 112, 572, 846, 1052, 1059
BstF5I GGATG 2 cut(s) 10, 315
BstHHI GCGC 2 cut(s) 333, 375
BstKTI GATC 5 cut(s) 10, 43, 91, 412, 961
BstMAI GTCTC 1 cut(s) 915
BstMBI GATC 5 cut(s) 7, 40, 88, 409, 958
BstMWI GCNNNNNNNGC 3 cut(s) 54, 66, 627
BstNI CCWGG 3 cut(s) 270, 682, 924
BstSCI CCNGG 4 cut(s) 79, 268, 680, 922
BstSFI CTRYAG 2 cut(s) 622, 741
BstV1I GCAGC 6 cut(s) 81, 469, 608, 636, 639, 755
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
BsuI GTATCC 1 cut(s) 912
BsuRI GGCC 1 cut(s) 482
BtgZI GCGATG 2 cut(s) 75, 174
BtrI CACGTC 1 cut(s) 982
BtsCI GGATG 2 cut(s) 10, 315
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 511
Cac8I GCNNGC 3 cut(s) 67, 632, 748
CfoI GCGC 2 cut(s) 333, 375
Csp6I GTAC 1 cut(s) 569
CviAII CATG 5 cut(s) 130, 234, 382, 809, 863
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 5 cut(s) 112, 572, 846, 1052, 1059
DpnI GATC 5 cut(s) 9, 42, 90, 411, 960
DpnII GATC 5 cut(s) 7, 40, 88, 409, 958
DraI TTTAAA 1 cut(s) 900
EciI GGCGGA 2 cut(s) 135, 841
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 968
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 3 cut(s) 268, 680, 922
EcoT14I CCWWGG 1 cut(s) 521
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 5 cut(s) 133, 237, 385, 812, 866
FaqI GGGAC 3 cut(s) 289, 528, 594
FatI CATG 5 cut(s) 129, 233, 381, 808, 862
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 782
Fnu4HI GCNGC 7 cut(s) 58, 70, 458, 622, 625, 628, 744
FokI GGATG 2 cut(s) 17, 322
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 7 cut(s) 58, 70, 458, 622, 625, 628, 744
FspBI CTAG 7 cut(s) 66, 476, 522, 566, 579, 726, 747
GlaI GCGC 2 cut(s) 332, 374
GluI GCNGC 7 cut(s) 58, 70, 458, 622, 625, 628, 744
HaeIII GGCC 1 cut(s) 482
HapII CCGG 3 cut(s) 81, 209, 337
HhaI GCGC 2 cut(s) 333, 375
Hin1I GRCGYC 1 cut(s) 689
Hin1II CATG 5 cut(s) 133, 237, 385, 812, 866
Hin6I GCGC 2 cut(s) 331, 373
HinP1I GCGC 2 cut(s) 331, 373
HincII GTYRAC 2 cut(s) 439, 783
HindII GTYRAC 2 cut(s) 439, 783
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 615, 973
HpaII CCGG 3 cut(s) 81, 209, 337
HphI GGTGA 6 cut(s) 95, 198, 216, 552, 1015, 1064
Hpy166II GTNNAC 3 cut(s) 439, 718, 783
Hpy188I TCNGA 3 cut(s) 22, 292, 918
Hpy188III TCNNGA 3 cut(s) 953, 970, 1030
Hpy8I GTNNAC 3 cut(s) 439, 718, 783
Hpy99I CGWCG 4 cut(s) 691, 694, 784, 986
HpyAV CCTTC 4 cut(s) 182, 564, 780, 1030
HpyCH4III ACNGT 7 cut(s) 53, 156, 325, 367, 506, 702, 907
HpyCH4IV ACGT 2 cut(s) 689, 981
HpyCH4V TGCA 7 cut(s) 119, 237, 457, 624, 706, 743, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 66, 627
HpyF3I CTNAG 5 cut(s) 112, 572, 846, 1052, 1059
HpySE526I ACGT 2 cut(s) 689, 981
Hsp92I GRCGYC 1 cut(s) 689
Hsp92II CATG 5 cut(s) 133, 237, 385, 812, 866
HspAI GCGC 2 cut(s) 331, 373
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 40, 88, 409, 958
LmnI GCTCC 3 cut(s) 82, 211, 328
Lsp1109I GCAGC 6 cut(s) 81, 469, 608, 636, 639, 755
LweI GCATC 4 cut(s) 52, 106, 425, 999
MaeI CTAG 7 cut(s) 66, 476, 522, 566, 579, 726, 747
MaeII ACGT 2 cut(s) 689, 981
MaeIII GTNAC 3 cut(s) 123, 204, 693
MalI GATC 5 cut(s) 9, 42, 90, 411, 960
MboI GATC 5 cut(s) 7, 40, 88, 409, 958
MboII GAAGA 4 cut(s) 44, 458, 968, 1010
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 2 cut(s) 216, 360
MmeI TCCRAC 1 cut(s) 755
MseI TTAA 4 cut(s) 515, 804, 899, 1014
MspA1I CMGCKG 1 cut(s) 621
MspI CCGG 3 cut(s) 81, 209, 337
MspR9I CCNGG 4 cut(s) 81, 270, 682, 924
Mva1269I GAATGC 1 cut(s) 1049
MvaI CCWGG 3 cut(s) 270, 682, 924
MwoI GCNNNNNNNGC 3 cut(s) 54, 66, 627
NciI CCSGG 1 cut(s) 81
NdeII GATC 5 cut(s) 7, 40, 88, 409, 958
NheI GCTAGC 2 cut(s) 65, 746
NlaIII CATG 5 cut(s) 133, 237, 385, 812, 866
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 123, 204
NspV TTCGAA 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 968
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 57
PctI GAATGC 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 615, 973
PflFI GACNNNGTC 1 cut(s) 688
PkrI GCNGC 7 cut(s) 59, 71, 459, 623, 626, 629, 745
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 268, 680, 922
PspGI CCWGG 3 cut(s) 268, 680, 922
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 2 cut(s) 626, 745
PsuI RGATCY 1 cut(s) 958
PsyI GACNNNGTC 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 621
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 781
SaqAI TTAA 4 cut(s) 515, 804, 899, 1014
SatI GCNGC 7 cut(s) 58, 70, 458, 622, 625, 628, 744
Sau3AI GATC 5 cut(s) 7, 40, 88, 409, 958
ScaI AGTACT 1 cut(s) 570
ScrFI CCNGG 4 cut(s) 81, 270, 682, 924
SduI GDGCHC 2 cut(s) 216, 360
SfaNI GCATC 4 cut(s) 52, 106, 425, 999
SfcI CTRYAG 2 cut(s) 622, 741
Sfr274I CTCGAG 1 cut(s) 968
SfuI TTCGAA 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 968
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
SpeI ACTAGT 1 cut(s) 565
SsiI CCGC 5 cut(s) 57, 146, 273, 852, 1093
SspMI CTAG 7 cut(s) 66, 476, 522, 566, 579, 726, 747
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 4 cut(s) 79, 268, 680, 922
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 7 cut(s) 53, 156, 325, 367, 506, 702, 907
TaiI ACGT 2 cut(s) 692, 984
TaqI TCGA 6 cut(s) 30, 216, 782, 954, 969, 984
TatI WGTACW 1 cut(s) 568
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 615, 973
Tru1I TTAA 4 cut(s) 515, 804, 899, 1014
Tru9I TTAA 4 cut(s) 515, 804, 899, 1014
TscAI CASTG 2 cut(s) 50, 511
TseFI GTSAC 2 cut(s) 123, 204
TseI GCWGC 6 cut(s) 69, 457, 621, 624, 627, 743
Tsp45I GTSAC 2 cut(s) 123, 204
TspDTI ATGAA 4 cut(s) 177, 365, 465, 546
TspGWI ACGGA 2 cut(s) 790, 1010
TspRI CASTG 2 cut(s) 50, 511
Tth111I GACNNNGTC 1 cut(s) 688
XapI RAATTY 3 cut(s) 23, 775, 1077
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 968
XmaJI CCTAGG 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 782
XspI CTAG 7 cut(s) 66, 476, 522, 566, 579, 726, 747
ZraI GACGTC 1 cut(s) 690
ZrmI AGTACT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.