Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012917

Physical Location & Seq

Genomic Coordinates Reverse (-)

51985469 .. 51987661

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0417400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTGAAGGAATCGGCACGAAAGTGTTCGCATTGCGGTCACAACGGGCACAATTCTAGGACCTGCAACCACATAGGGCATGGGGTTAACAATAACAACAAGGGGGTTTGTTTGAAGCTTTTTGGGGTGAACATAATGGAAAGACAGGACGATTCTATGAAGAAGAGTTTCAGCATGGGAAATCTCCAGTCTGCCGGAAACGGAGACCAAAACAACAACATCAATGTCGGAGCTGACGATGCTGGCTACCTCTCCGACGGCCTCATCCATAACAAGAAACGCAAAGCCGCCCATGAAAGAAAAAAAGGGAGACCTTGGACTGAGGAAGAGCATAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGGAAAGGCGATTGGAGAGGTATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCAAGTCATGCACAGAAGTACTTTCTTAGGCAGGCTACCAACGACAAGCGTAAACGAAGAACAAGTCTATTTGATTTGCACTTCAAAGAATTATCTGAACAATATGCTCATCAAGATTCTCCACTCTCACCGACAGCGAAAACAGCTGAAGCTTCTTCTTCTTCTTCATCACCAGGTAGCAGCTCTAAAGTTCTGCCACAAATCACTACAACTACGAACTCGCAACAGGCAAGCATGCCAGGTCAGGTCCTGAACCGATTTCCACATCTATGCTTGGATAGCCCCCCACCTGTTGCTCAAATGCCTGCAGCATCTTGCAGTGTTCCTAATTACGCTCCAGTTATCCCATACATGCAGGTAGGAATGCCTGGGACTGTACCATATACAGCAGCAATGCACTATGGCAGTCCAACTTTCCACTACATGCTTAAGACGCAGGGTGGTAGTTTCGCTACATGTCCACCGGTTATTTCTCACCCATCAGGGATTCCATCATCACCGAAGTCTCTCCCAAGCAGTCCGTCGATGGGAGTTCATCGTAGGAACTCGTCGATCTCTAAGAAGGATGCTTTAGAGCTTAAAATTGGGCAGCCACAACCATCTCAAGGAGCCAATTTGTCATCCTCTTCTTCTGGGGCAATCAGAGTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006761 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008841 GO:0009058 GO:0009108 GO:0009396 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019752 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046452 GO:0046483 GO:0046900 GO:0046901 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0070013 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

Mur_ligase_M

Protein Analysis

359

Amino Acids

38.82

Weight (kDa)

9.85

Isoelectric Point (pI)

66.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	105 - 150	1.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41480
fragaria_vesca	FvH4_7g31010 FvH4_7g31010
malus_domestica	MD07G1285000.v1.1
prunus_persica	Prupe.2G307100_v2.0.a1
pyrus_communis	pycom07g25870
rosa_chinensis	RchiOBHm_Chr1g0380091
rosa_laevigata	RLG00000026333
rosa_multiflora	Rmu_sc0001232.1_g000007 Rmu_sc0004184.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279720
rosa_rugosa	Rorug01G0417300 Rorug01G0417400
rosa_samantha	Rh1AG442500 Rh1BG397500 Rh1CG410900 Rh1DG428300
rosa_wichuraiana	Rw1G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	71, 772
AciI	CCGC	2 cut(s)	36, 288
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	446, 804
AfiI	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
AflII	CTTAAG	1 cut(s)	854
AflIII	ACRYGT	1 cut(s)	881
AgeI	ACCGGT	1 cut(s)	889
AgsI	TTSAA	3 cut(s)	115, 355, 511
AjnI	CCWGG	3 cut(s)	598, 664, 793
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	7 cut(s)	118, 233, 361, 572, 578, 609, 1003
AluI	AGCT	7 cut(s)	118, 233, 361, 572, 578, 609, 1003
Alw26I	GTCTC	3 cut(s)	198, 304, 936
AlwNI	CAGNNNCTG	1 cut(s)	676
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	4 cut(s)	606, 734, 815, 1015
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AsiGI	ACCGGT	1 cut(s)	889
Asp700I	GAANNNNTTC	2 cut(s)	25, 167
AspS9I	GGNCC	2 cut(s)	60, 673
AsuHPI	GGTGA	6 cut(s)	16, 139, 546, 588, 893, 915
AvaII	GGWCC	2 cut(s)	60, 673
BaeGI	GKGCMC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	618, 746, 827, 1027
BccI	CCATC	4 cut(s)	913, 925, 946, 1033
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	3 cut(s)	600, 666, 795
BcoDI	GTCTC	3 cut(s)	198, 304, 936
BfaI	CTAG	3 cut(s)	57, 344, 408
BfmI	CTRYAG	1 cut(s)	732
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	2 cut(s)	71, 772
BisI	GCNGC	5 cut(s)	288, 607, 735, 816, 1016
BlsI	GCNGC	5 cut(s)	289, 608, 736, 817, 1017
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	600, 666, 795
Bme18I	GGWCC	2 cut(s)	60, 673
BmgT120I	GGNCC	2 cut(s)	60, 673
BmiI	GGNNCC	1 cut(s)	1036
BmrFI	CCNGG	3 cut(s)	600, 666, 795
BmsI	GCATC	3 cut(s)	229, 746, 982
BpmI	CTGGAG	2 cut(s)	170, 747
BpuEI	CTTGAG	1 cut(s)	1014
BsaI	GGTCTC	2 cut(s)	198, 304
BsaJI	CCNNGG	2 cut(s)	314, 794
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	187, 764
Bse3DI	GCAATG	2 cut(s)	31, 825
BseBI	CCWGG	3 cut(s)	600, 666, 795
BseDI	CCNNGG	2 cut(s)	314, 794
BseGI	GGATG	3 cut(s)	264, 997, 1046
BseLI	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
BseMI	GCAATG	2 cut(s)	31, 825
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	187, 764
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	618, 746, 827, 1027
BshFI	GGCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	889
BsiSI	CCGG	3 cut(s)	195, 348, 890
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
BsmAI	GTCTC	3 cut(s)	198, 304, 936
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	2 cut(s)	198, 304
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	978
BspACI	CCGC	2 cut(s)	36, 288
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	1036
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	2 cut(s)	71, 772
BspQI	GCTCTTC	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	2 cut(s)	198, 304
BsrDI	GCAATG	2 cut(s)	31, 825
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	187, 764
BssAI	RCCGGY	1 cut(s)	889
BssECI	CCNNGG	2 cut(s)	314, 794
BssMI	GATC	1 cut(s)	978
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	600, 666, 795
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	3 cut(s)	158, 321, 1057
BstAFI	CTTAAG	1 cut(s)	854
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	244, 459, 658, 662, 732
BstDEI	CTNAG	3 cut(s)	321, 452, 984
BstF5I	GGATG	3 cut(s)	264, 997, 1046
BstKTI	GATC	1 cut(s)	981
BstMAI	GTCTC	3 cut(s)	198, 304, 936
BstMBI	GATC	1 cut(s)	978
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 705, 859
BstNI	CCWGG	3 cut(s)	600, 666, 795
BstNSI	RCATGY	4 cut(s)	664, 781, 853, 885
BstSCI	CCNGG	3 cut(s)	598, 664, 793
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	4 cut(s)	618, 746, 827, 1027
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	264, 997, 1046
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	1 cut(s)	751
BveI	ACCTGC	2 cut(s)	71, 772
Cac8I	GCNNGC	5 cut(s)	244, 459, 658, 662, 732
CaiI	CAGNNNCTG	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	2 cut(s)	60, 673
CseI	GACGC	1 cut(s)	868
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	445, 803
CspAI	ACCGGT	1 cut(s)	889
CviAII	CATG	8 cut(s)	80, 175, 293, 434, 661, 778, 850, 882
CviQI	GTAC	2 cut(s)	445, 803
DdeI	CTNAG	3 cut(s)	321, 452, 984
DpnI	GATC	1 cut(s)	980
DpnII	GATC	1 cut(s)	978
Eam1104I	CTCTTC	3 cut(s)	158, 321, 1057
EarI	CTCTTC	3 cut(s)	158, 321, 1057
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	198, 304
Eco47I	GGWCC	2 cut(s)	60, 673
Eco57I	CTGAAG	1 cut(s)	594
EcoO109I	RGGNCCY	2 cut(s)	60, 673
EcoRII	CCWGG	3 cut(s)	598, 664, 793
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	8 cut(s)	83, 178, 296, 437, 664, 781, 853, 885
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	8 cut(s)	79, 174, 292, 433, 660, 777, 849, 881
Fnu4HI	GCNGC	5 cut(s)	288, 607, 735, 816, 1016
FokI	GGATG	3 cut(s)	251, 1004, 1033
Fsp4HI	GCNGC	5 cut(s)	288, 607, 735, 816, 1016
FspBI	CTAG	3 cut(s)	57, 344, 408
GluI	GCNGC	5 cut(s)	288, 607, 735, 816, 1016
GsuI	CTGGAG	2 cut(s)	170, 747
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	3 cut(s)	195, 348, 890
HgaI	GACGC	1 cut(s)	868
Hin1II	CATG	8 cut(s)	83, 178, 296, 437, 664, 781, 853, 885
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	3 cut(s)	116, 359, 576
HinfI	GANTC	5 cut(s)	11, 152, 542, 913, 1071
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	195, 348, 890
HphI	GGTGA	6 cut(s)	16, 139, 546, 588, 893, 915
Hpy166II	GTNNAC	4 cut(s)	88, 130, 479, 887
Hpy188I	TCNGA	4 cut(s)	230, 256, 523, 1070
Hpy188III	TCNNGA	2 cut(s)	539, 676
Hpy8I	GTNNAC	4 cut(s)	88, 130, 479, 887
Hpy99I	CGWCG	3 cut(s)	260, 952, 979
HpyAV	CCTTC	1 cut(s)	982
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4V	TGCA	9 cut(s)	66, 389, 428, 437, 505, 734, 744, 781, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 705, 859
HpyF3I	CTNAG	3 cut(s)	321, 452, 984
Hsp92II	CATG	8 cut(s)	83, 178, 296, 437, 664, 781, 853, 885
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	978
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	230, 766, 1034
Lsp1109I	GCAGC	4 cut(s)	618, 746, 827, 1027
LweI	GCATC	3 cut(s)	229, 746, 982
MabI	ACCWGGT	1 cut(s)	598
MaeI	CTAG	3 cut(s)	57, 344, 408
MaeIII	GTNAC	3 cut(s)	38, 400, 1072
MalI	GATC	1 cut(s)	980
MboI	GATC	1 cut(s)	978
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	6 cut(s)	52, 394, 515, 754, 1008, 1039
MlyI	GAGTC	1 cut(s)	1080
MmeI	TCCRAC	3 cut(s)	208, 279, 860
MnlI	CCTC	5 cut(s)	260, 272, 316, 374, 1060
MroXI	GAANNNNTTC	2 cut(s)	25, 167
MseI	TTAA	3 cut(s)	87, 855, 1005
MslI	CAYNNNNRTG	2 cut(s)	22, 694
MspA1I	CMGCKG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	3 cut(s)	195, 348, 890
MspR9I	CCNGG	3 cut(s)	600, 666, 795
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	3 cut(s)	600, 666, 795
MwoI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 705, 859
NdeII	GATC	1 cut(s)	978
NlaIII	CATG	8 cut(s)	83, 178, 296, 437, 664, 781, 853, 885
NlaIV	GGNNCC	1 cut(s)	1036
NmuCI	GTSAC	3 cut(s)	38, 400, 1072
NspI	RCATGY	4 cut(s)	664, 781, 853, 885
OliI	CACNNNNGTG	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	664
PciI	ACATGT	1 cut(s)	881
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	795
PdmI	GAANNNNTTC	2 cut(s)	25, 167
PfeI	GAWTC	4 cut(s)	11, 152, 542, 913
PinAI	ACCGGT	1 cut(s)	889
PkrI	GCNGC	5 cut(s)	289, 608, 736, 817, 1017
PleI	GAGTC	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	1079
PpuMI	RGGWCCY	2 cut(s)	60, 673
PscI	ACATGT	1 cut(s)	881
Psp5II	RGGWCCY	2 cut(s)	60, 673
Psp6I	CCWGG	3 cut(s)	598, 664, 793
PspGI	CCWGG	3 cut(s)	598, 664, 793
PspN4I	GGNNCC	1 cut(s)	1036
PspPI	GGNCC	2 cut(s)	60, 673
PspPPI	RGGWCCY	2 cut(s)	60, 673
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	2 cut(s)	446, 804
RsaNI	GTAC	2 cut(s)	445, 803
RseI	CAYNNNNRTG	2 cut(s)	22, 694
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	87, 855, 1005
SatI	GCNGC	5 cut(s)	288, 607, 735, 816, 1016
Sau3AI	GATC	1 cut(s)	978
Sau96I	GGNCC	2 cut(s)	60, 673
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	1080
ScrFI	CCNGG	3 cut(s)	600, 666, 795
SduI	GDGCHC	1 cut(s)	51
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	3 cut(s)	229, 746, 982
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	2 cut(s)	60, 673
SmiMI	CAYNNNNRTG	2 cut(s)	22, 694
SmlI	CTYRAG	2 cut(s)	854, 1029
SmoI	CTYRAG	2 cut(s)	854, 1029
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	6 cut(s)	52, 394, 515, 754, 1008, 1039
SsiI	CCGC	2 cut(s)	36, 288
SspMI	CTAG	3 cut(s)	57, 344, 408
StyD4I	CCNGG	3 cut(s)	598, 664, 793
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	802
TaqI	TCGA	2 cut(s)	950, 977
TasI	AATT	6 cut(s)	52, 394, 515, 754, 1008, 1039
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	4 cut(s)	11, 152, 542, 913
Tru1I	TTAA	3 cut(s)	87, 855, 1005
Tru9I	TTAA	3 cut(s)	87, 855, 1005
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	3 cut(s)	38, 400, 1072
TseI	GCWGC	4 cut(s)	606, 734, 815, 1015
Tsp45I	GTSAC	3 cut(s)	38, 400, 1072
TspDTI	ATGAA	4 cut(s)	173, 309, 582, 950
TspGWI	ACGGA	2 cut(s)	216, 936
TspRI	CASTG	1 cut(s)	751
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	2 cut(s)	60, 673
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	4 cut(s)	664, 781, 853, 885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmnI	GAANNNNTTC	2 cut(s)	25, 167
XspI	CTAG	3 cut(s)	57, 344, 408
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.