Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Forward (+)

51969456 .. 51972243

Gene Structure 2788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0417300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCCTGAATATGATTACTTGTTTAAGCTTCTGCTGATTGGAGACTCCGGGGTTGGAAAGTCGTGTCTTCTTCTGAGGTTTGCTGATGATTCATATCTGGACAGCTATATCAGCACAATCGGAGTTGATTTTAAAATTCGCACTGTGGAGCAAGATAGTAAAACAATCAAACTTCAAATTTGGGACACTGCTGGACAAGAACGTTTTAGGACAATTACTAGTAGCTACTACCGTGGGGCACATGGCATTATAATAGTCTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGTTGAGTGAAATTGACCGTTATGCCAGTGAGAACGTAAACAAGCTTCTTGTTGGCAACAAGTCTGACCTCACTGCTAACAAAGTTGTGTCTTACGAAACAGCTAAGGCATTTGCTGATGAGATTGGGATCCCTTTCATGGAGACTAGTGCAAAAAATGCTACTAATGTGGAGCAGGCTTTTATGGCAATGTCTGCTGACATCAAGAATAGGATGGCAACTCAACCAATGAACAATGCGAGGCCACCAACAGTGCAAATTCGAGGACAACCTGTCAACCAGAATTCTGGCTGCTGCTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006761 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008841 GO:0009058 GO:0009108 GO:0009396 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019752 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046452 GO:0046483 GO:0046900 GO:0046901 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0070013 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

Mur_ligase_M

Protein Analysis

202

Amino Acids

22.61

Weight (kDa)

5.26

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 129	1.6e-16	ADP-ribosylation factor family
Ras	PF00071	10 - 170	7.6e-68	Ras family
Roc	PF08477	10 - 124	1.7e-36	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	2 cut(s)	427, 440
AcsI	RAATTY	4 cut(s)	138, 180, 561, 586
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	179, 289
AhdI	GACNNNNNGTC	1 cut(s)	575
AhlI	ACTAGT	2 cut(s)	221, 449
AluBI	AGCT	6 cut(s)	31, 108, 228, 285, 349, 407
AluI	AGCT	6 cut(s)	31, 108, 228, 285, 349, 407
Alw26I	GTCTC	2 cut(s)	39, 440
AlwI	GGATC	2 cut(s)	427, 440
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	594, 597
ApoI	RAATTY	4 cut(s)	138, 180, 561, 586
AsuC2I	CCSGG	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	432
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	581, 584
BccI	CCATC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	39, 440
BcuI	ACTAGT	2 cut(s)	221, 449
BfaI	CTAG	2 cut(s)	222, 450
BisI	GCNGC	2 cut(s)	595, 598
BlsI	GCNGC	2 cut(s)	596, 599
Bme1390I	CCNGG	1 cut(s)	52
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	52
BsaBI	GATNNNNATC	2 cut(s)	96, 431
BsaJI	CCNNGG	2 cut(s)	51, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	2 cut(s)	308, 498
Bse8I	GATNNNNATC	2 cut(s)	96, 431
BseDI	CCNNGG	2 cut(s)	51, 235
BseGI	GGATG	1 cut(s)	522
BseJI	GATNNNNATC	2 cut(s)	96, 431
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	2 cut(s)	308, 498
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	581, 584
BshFI	GGCC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	39, 440
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	427, 440
BsrDI	GCAATG	2 cut(s)	308, 498
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	51, 235
BssMI	GATC	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	148, 236, 323, 556
BstAPI	GCANNNNNTGC	2 cut(s)	461, 497
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	77, 408
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	522
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	2 cut(s)	39, 440
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 461, 488, 497
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	581, 584
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	522
BtsI	GCAGTG	2 cut(s)	189, 375
BtsIMutI	CAGTG	5 cut(s)	144, 189, 337, 375, 561
Cac8I	GCNNGC	1 cut(s)	480
CviAII	CATG	2 cut(s)	245, 442
CviJI	RGCY	9 cut(s)	31, 108, 228, 285, 349, 407, 482, 547, 594
CviKI_1	RGCY	9 cut(s)	31, 108, 228, 285, 349, 407, 482, 547, 594
DdeI	CTNAG	2 cut(s)	77, 408
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
DraI	TTTAAA	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	575
Eam1105I	GACNNNNNGTC	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	586
FaeI	CATG	2 cut(s)	248, 445
FaiI	YATR	9 cut(s)	15, 97, 111, 246, 254, 264, 327, 443, 488
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	244, 441
Fnu4HI	GCNGC	2 cut(s)	595, 598
FokI	GGATG	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	595, 598
FspBI	CTAG	2 cut(s)	222, 450
GluI	GCNGC	2 cut(s)	595, 598
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	248, 445
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	2 cut(s)	29, 347
HinfI	GANTC	3 cut(s)	4, 47, 92
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	343, 580
Hpy188I	TCNGA	3 cut(s)	78, 125, 370
Hpy188III	TCNNGA	3 cut(s)	8, 101, 508
Hpy8I	GTNNAC	2 cut(s)	343, 580
HpyCH4III	ACNGT	4 cut(s)	148, 236, 323, 556
HpyCH4IV	ACGT	3 cut(s)	205, 294, 339
HpyCH4V	TGCA	2 cut(s)	455, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 461, 488, 497
HpyF3I	CTNAG	2 cut(s)	77, 408
HpySE526I	ACGT	3 cut(s)	205, 294, 339
Hsp92II	CATG	2 cut(s)	248, 445
Kzo9I	GATC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	151, 475
LpnPI	CCDG	9 cut(s)	21, 64, 86, 180, 343, 464, 576, 588, 596
Lsp1109I	GCAGC	2 cut(s)	581, 584
MaeI	CTAG	2 cut(s)	222, 450
MaeII	ACGT	3 cut(s)	205, 294, 339
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	2 cut(s)	62, 65
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	6 cut(s)	138, 180, 216, 315, 561, 586
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	72, 383, 537, 560
MseI	TTAA	3 cut(s)	27, 135, 607
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	114, 461, 488, 497
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	2 cut(s)	248, 445
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	4, 92
PkrI	GCNGC	2 cut(s)	596, 599
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	27, 135, 607
SatI	GCNGC	2 cut(s)	595, 598
Sau3AI	GATC	1 cut(s)	432
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	244
SpeI	ACTAGT	2 cut(s)	221, 449
Sse9I	AATT	6 cut(s)	138, 180, 216, 315, 561, 586
SspMI	CTAG	2 cut(s)	222, 450
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	4 cut(s)	148, 236, 323, 556
TaiI	ACGT	3 cut(s)	208, 297, 342
TaqI	TCGA	1 cut(s)	565
TasI	AATT	6 cut(s)	138, 180, 216, 315, 561, 586
TfiI	GAWTC	2 cut(s)	4, 92
Tru1I	TTAA	3 cut(s)	27, 135, 607
Tru9I	TTAA	3 cut(s)	27, 135, 607
TscAI	CASTG	5 cut(s)	151, 196, 337, 382, 561
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	594, 597
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	17, 84, 430, 548
TspRI	CASTG	5 cut(s)	151, 196, 337, 382, 561
XapI	RAATTY	4 cut(s)	138, 180, 561, 586
XspI	CTAG	2 cut(s)	222, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.