Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Reverse (-)

66348458 .. 66349163

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG441800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCCAAGGATCAAACAAGGATGTTGAAGAAGATGAACCTGAAGAGGTTGGGTGAGAAAGTGAAGGTGAAAGCTTGGGTGGGAAGTGATGATGCTTCTAGTGAGTCAAATAGTGTGTCAGATGATGAGGTGAATTTTGAGGAGGTTCTATCAACATTTCAAAGGAACAAAGATCACAACACAAAATGGGAGTTTGAGGCAGACATGCTTGTTGCATTCGACAGCAAATTTCTGGGGAAAAAAATTAGTGGGGGGACTTTGTGCTACAATTCTCGAGGCTTTAGCAAGTTTGATGCTCGCAGGGGCTCTAAATTGGCTGAGTTTCTCACTGATGGAGATCCATCTGGTGATCTGAATAAAACCGTAGAGGAGTTGGAGGAGCGTGACCCCGAGGCCATTGAAACATGTAGAACATTTGCGACTCGTTACTCTAAGCAACTATTTGAGATCTACAAAAACAAAGAGGATCCTCTCCTTCTGCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.51

Weight (kDa)

5.4

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	18, 332, 461, 474
AcsI	RAATTY	2 cut(s)	133, 227
AcuI	CTGAAG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	28, 161, 401
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	4 cut(s)	18, 332, 461, 474
Ama87I	CYCGRG	2 cut(s)	273, 389
AoxI	GGCC	1 cut(s)	393
ApoI	RAATTY	2 cut(s)	133, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AsuHPI	GGTGA	4 cut(s)	65, 79, 142, 359
AvaI	CYCGRG	2 cut(s)	273, 389
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	308
BccI	CCATC	2 cut(s)	326, 349
BfaI	CTAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	447
BmeT110I	CYCGRG	2 cut(s)	273, 389
BmiI	GGNNCC	1 cut(s)	468
BmsI	GCATC	2 cut(s)	82, 283
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	6, 390
Bse8I	GATNNNNATC	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	6, 390
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	3 cut(s)	155, 383, 392
BshFI	GGCC	1 cut(s)	395
BsiHKCI	CYCGRG	2 cut(s)	273, 389
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	273, 389
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	4 cut(s)	18, 332, 461, 474
BssECI	CCNNGG	2 cut(s)	6, 390
BssMI	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	318, 432
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	6 cut(s)	13, 175, 340, 352, 450, 469
BstMBI	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
BstNSI	RCATGY	2 cut(s)	208, 408
BstX2I	RGATCY	3 cut(s)	337, 447, 466
BstYI	RGATCY	3 cut(s)	337, 447, 466
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	298
CviAII	CATG	2 cut(s)	205, 405
CviJI	RGCY	5 cut(s)	74, 279, 306, 317, 395
CviKI_1	RGCY	5 cut(s)	74, 279, 306, 317, 395
DdeI	CTNAG	2 cut(s)	318, 432
DpnI	GATC	6 cut(s)	12, 174, 339, 351, 449, 468
DpnII	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	62
Eco88I	CYCGRG	2 cut(s)	273, 389
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	208, 408
FaiI	YATR	2 cut(s)	206, 406
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	204, 404
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	208, 408
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	2 cut(s)	104, 421
HphI	GGTGA	4 cut(s)	65, 79, 142, 359
Hpy188I	TCNGA	2 cut(s)	121, 354
Hpy188III	TCNNGA	2 cut(s)	273, 486
HpyAV	CCTTC	2 cut(s)	58, 485
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	318, 432
Hsp92II	CATG	2 cut(s)	208, 408
Kzo9I	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	4 cut(s)	53, 218, 286, 330
LweI	GCATC	2 cut(s)	82, 283
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	383, 425
MalI	GATC	6 cut(s)	12, 174, 339, 351, 449, 468
MboI	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
MboII	GAAGA	3 cut(s)	40, 43, 55
MflI	RGATCY	3 cut(s)	337, 447, 466
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	5 cut(s)	133, 227, 243, 268, 311
MlyI	GAGTC	2 cut(s)	113, 415
MmeI	TCCRAC	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	215
NdeII	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
NlaIII	CATG	2 cut(s)	208, 408
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	2 cut(s)	208, 408
PaeR7I	CTCGAG	1 cut(s)	273
PciI	ACATGT	1 cut(s)	404
PctI	GAATGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	112, 415
PpsI	GAGTC	2 cut(s)	112, 415
PscI	ACATGT	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	468
PsuI	RGATCY	3 cut(s)	337, 447, 466
Sau3AI	GATC	6 cut(s)	10, 172, 337, 349, 447, 466
SchI	GAGTC	2 cut(s)	113, 415
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	6 cut(s)	42, 50, 69, 76, 132, 147
SfaNI	GCATC	2 cut(s)	82, 283
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	5 cut(s)	133, 227, 243, 268, 311
SspMI	CTAG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	219, 274
TasI	AATT	5 cut(s)	133, 227, 243, 268, 311
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	334
XapI	RAATTY	2 cut(s)	133, 227
XceI	RCATGY	2 cut(s)	208, 408
XhoI	CTCGAG	1 cut(s)	273
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.