Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Reverse (-)

66349339 .. 66350722

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG441900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAGAAGAGATTAAGGCATTGAAGAGAGGAAGTGATGAAATTATGGAGCAGGAAGATGGGGTGTTTCAGCTTATGGTTGAGAACAAAGTGTTGGAGTGTGAGAAGAAGAATGCTGAAAGTCAGGCTGAGGCTTGGAAGCAAAAGTTCAAAGAATTGGAAACGTGGGTCTTGAAAGGTGGGGAGTTTCCTTTGAAGTTAACTGGGGATTCCGTTGAAGCGAGCAGGAGAACACAACCAAGTGCAAGGATCGAACTTGAGGAGGGAGTTGGCATGGAAAGTTCAAGGAGCAAAGATATAGCTGTGAATGTTATCGATGTTAGCTCTACATATCACTCCCCTGGTAAAGGAATCTGCCATCTGCAAGCAGCAGGTATGCCTCCTAATGTTACATTTTATGAGCATCGCAATTGTACTAAGGAAGAAAAGAGATCTGGTAATGAATATGGTAACGTTAGTCAAGCAAGAAAACAGCTGGAATTCAAGGAAGATAGGAGTCCTTGCAAGAAGATGGCTCCACCTATGCCAGGTGGTGGCAGACCTTTCTCTCTCAGTGTCATTGATATCAGTGACAGTGATGGTGAAGTTACTTTTGTCGATAACCAAAAAGTTTTGCCTACTGAGAATCAGGGAAGCAGAAAGATTTGCATATCATCGGATTCTGTAATAGGAGGTTTGGCCACCAAAAGCTTTTTAAAGCAGGCACATACTGACAGTAATGATCAGGAAGATGTCAACAATTACAATCAGGAATTACTGGCTTTCTCAACACCCAAAAGAAAACGAGCTTCTAATGTTGTGACCAGTGACTCTGAGAGTAGTGATGATAATCTTCCTATCAGTTTAGTCAAGAGAATGCATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

32.03

Weight (kDa)

5.37

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	533
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	347, 527, 533
AgsI	TTSAA	7 cut(s)	25, 151, 175, 196, 218, 285, 484
AjnI	CCWGG	2 cut(s)	340, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	6 cut(s)	73, 302, 324, 475, 690, 788
AluI	AGCT	6 cut(s)	73, 302, 324, 475, 690, 788
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	680
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	4 cut(s)	53, 366, 505, 572
BciT130I	CCWGG	2 cut(s)	342, 528
BclI	TGATCA	1 cut(s)	721
BfuAI	ACCTGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	342, 528
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	342, 528
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	828
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 527, 533
Bse1I	ACTGG	3 cut(s)	208, 762, 804
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	2 cut(s)	342, 528
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	3 cut(s)	347, 527, 533
BseMII	CTCAG	4 cut(s)	120, 565, 612, 804
BseNI	ACTGG	3 cut(s)	208, 762, 804
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	680
BshVI	ATCGAT	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	347, 527, 533
BsmI	GAATGC	2 cut(s)	118, 861
BsnI	GGCC	1 cut(s)	680
Bsp143I	GATC	3 cut(s)	249, 431, 721
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	4 cut(s)	121, 564, 613, 805
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	257
BsrI	ACTGG	3 cut(s)	208, 762, 804
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	249, 431, 721
Bst2UI	CCWGG	2 cut(s)	342, 528
Bst4CI	ACNGT	2 cut(s)	575, 716
Bst6I	CTCTTC	2 cut(s)	3, 20
BstC8I	GCNNGC	3 cut(s)	223, 366, 702
BstDEI	CTNAG	5 cut(s)	129, 417, 551, 621, 813
BstENI	CCTNNNNNAGG	2 cut(s)	345, 525
BstKTI	GATC	3 cut(s)	252, 434, 724
BstMBI	GATC	3 cut(s)	249, 431, 721
BstNI	CCWGG	2 cut(s)	342, 528
BstSCI	CCNGG	2 cut(s)	340, 526
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	680
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	389
BtsIMutI	CAGTG	4 cut(s)	559, 574, 580, 811
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	3 cut(s)	223, 366, 702
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	5 cut(s)	129, 417, 551, 621, 813
DpnI	GATC	3 cut(s)	251, 433, 723
DpnII	GATC	3 cut(s)	249, 431, 721
DraI	TTTAAA	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	2 cut(s)	3, 20
EarI	CTCTTC	2 cut(s)	3, 20
Eco32I	GATATC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	2 cut(s)	345, 525
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	340, 526
EcoRV	GATATC	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	861
FaeI	CATG	1 cut(s)	277
FatI	CATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	680
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	2 cut(s)	201, 736
HindII	GTYRAC	2 cut(s)	201, 736
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	6 cut(s)	209, 351, 496, 625, 659, 809
HpaI	GTTAAC	1 cut(s)	201
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	2 cut(s)	201, 736
Hpy188I	TCNGA	2 cut(s)	658, 814
Hpy188III	TCNNGA	4 cut(s)	172, 725, 749, 850
Hpy8I	GTNNAC	2 cut(s)	201, 736
HpyCH4III	ACNGT	2 cut(s)	575, 716
HpyCH4IV	ACGT	2 cut(s)	164, 453
HpyCH4V	TGCA	5 cut(s)	245, 364, 504, 648, 859
HpyF3I	CTNAG	5 cut(s)	129, 417, 551, 621, 813
HpySE526I	ACGT	2 cut(s)	164, 453
Hsp92II	CATG	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	249, 431, 721
LmnI	GCTCC	3 cut(s)	49, 288, 520
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	2 cut(s)	164, 453
MaeIII	GTNAC	6 cut(s)	388, 449, 569, 586, 799, 806
MalI	GATC	3 cut(s)	251, 433, 723
MboI	GATC	3 cut(s)	249, 431, 721
MfeI	CAATTG	1 cut(s)	409
MflI	RGATCY	1 cut(s)	431
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	6 cut(s)	42, 155, 409, 479, 739, 752
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	505, 803
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	23, 124, 253, 256, 390, 665
Mox20I	TGGCCA	1 cut(s)	680
Mph1103I	ATGCAT	1 cut(s)	861
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	3 cut(s)	15, 200, 695
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	475
MspR9I	CCNGG	2 cut(s)	342, 528
MunI	CAATTG	1 cut(s)	409
Mva1269I	GAATGC	2 cut(s)	118, 861
MvaI	CCWGG	2 cut(s)	342, 528
NdeII	GATC	3 cut(s)	249, 431, 721
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	3 cut(s)	569, 799, 806
NsiI	ATGCAT	1 cut(s)	861
PctI	GAATGC	2 cut(s)	118, 861
PfeI	GAWTC	4 cut(s)	209, 351, 625, 659
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	2 cut(s)	504, 803
PpsI	GAGTC	2 cut(s)	504, 803
Psp1406I	AACGTT	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	340, 526
PspGI	CCWGG	2 cut(s)	340, 526
PspN4I	GGNNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	15, 200, 695
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	249, 431, 721
SchI	GAGTC	2 cut(s)	505, 803
ScrFI	CCNGG	2 cut(s)	342, 528
SfaNI	GCATC	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	42, 155, 409, 479, 739, 752
StyD4I	CCNGG	2 cut(s)	340, 526
TaaI	ACNGT	2 cut(s)	575, 716
TaiI	ACGT	2 cut(s)	167, 456
TaqI	TCGA	3 cut(s)	252, 315, 597
TasI	AATT	6 cut(s)	42, 155, 409, 479, 739, 752
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	4 cut(s)	209, 351, 625, 659
Tru1I	TTAA	3 cut(s)	15, 200, 695
Tru9I	TTAA	3 cut(s)	15, 200, 695
TscAI	CASTG	4 cut(s)	559, 574, 580, 811
TseFI	GTSAC	3 cut(s)	569, 799, 806
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	3 cut(s)	569, 799, 806
TspDTI	ATGAA	2 cut(s)	54, 456
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	4 cut(s)	559, 574, 580, 811
Van91I	CCANNNNNTGG	1 cut(s)	533
XagI	CCTNNNNNAGG	2 cut(s)	345, 525
XapI	RAATTY	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.