Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Forward (+)

2242795 .. 2245280

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026334

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGGAGGTGGTGGAAGATTGTGGGGCTAGTGAGGTAGAAAATAGGAGGAGGAGAGCTGAAGAGAGGTGTGAGGAGTTAGAGTTGGAGATTGTGAAGAGAAAGAGTGAGTATGAAGCTCTTGAGGTTAAGCTTCGGGCTTTGGAAGGCGAAAAGCTTGCGATGGAAGAAGAGATTAGGGAATTGAAGAGAGGAAGTGGTGAAATTAGGAAGCAAGTTAATGGGGCTGGAGATGGGACGGAGATAATAGTTGATTTTAATGAGGATAGTTTGGAGGGAGACGGGGTCTTTCAGCTTATGCTTGAGAACAAGGTGTTGGAGTGTGAGAAGAAGACTGCTGAAACTGAGGTTGAGGCTTGGAAGCAGAAGTTCAAAGAATTGAAGACGTGGGTCTTGAAGTTAGACAAGGATTTAGTCTTGAAAGGTGGGGAGTTTCCGTGGAACTTAACTGGGGATTCTGTTGAAGCGAGCAGGAGAACACAACCGAATGAAAGGATTGAACTTGAGGATGGGTTGAATGTTGGAGTTGGCATGGATAGTTCAAGGAGCAAAGATATAGCTGTGAATGTTATTGATCTTAGCTCTACATATCACTCCCCTGGTAAAGGGATCTGCCATCTGCAAGAAGCAGGTACACCTCCTAATGTTACACTTTATGAGCATCACAATGGTACTAAGGAAGAAAAGAGATCTGGTGTGGAATGTGGTAATGTTAGTCGAGCAAGAAAACAGCTGGAATTCAAGAAAGATAGGAGTCCTTGCAAGAAGATGGCTCCACCTACGCCAGGTGGTGGCAGACCTTTCTCTCTTAGTGTCATTGATATTAGTGACAGCGATGATGAAGTTACTATTGCTGATAACCAAAAAGTTTTGCCTACTGAGAATCAGGGAAGCAGAAAGATTTGCATATCATCTGATTCTGTAATAGGAGGTCTGGCTACCGAAAGCTTTTTAAAGCAGGCACATACTGACAGTCATGATCAGGAAGATCTCGATAATTACAATGAGGAATTACTGGCTTTCTCAACACCCAAAAGAAAACGAGCTTCTAATGTTGTGACCAGTGACTCTGAGAGTAGTGATGATAATATTCCTATCAATGCAGTCAAGAGAATGCATTGTCAGAAAAGAATACATGATCATTCTGAGAGTAGTGATGATAATGTTCCTATCAATGCGGTCAAGAGAATGCATCTTCAGAAAAGAATACATGATCAAGTAGGATCTGATGTGAATGGCAGCTTAGAGACTGCTACTGCTTCTGTGGTTGATGATGTTAGTGTTACCTCTCCAAAGCGACGTTTAGTTAGGTTGAGAAAATGTGGGGGAAGAGGTCGGGCGCAAAGGAACTCAAGTCAGACAAGTGAAACTAAAAATAATCGAGGACCAAACAAGGGTGTTGACGAAGATGAGCCCGAAGAGGTTGGGTCAGAAAGTGAAGGGGAAAGCTTGGGTGGGTTTATTGTACATAGCTCTGATGTTTCAGAAAGTAATGATGCCTCTAGTGAGTCAAATAGTGTGTCAGATGATGATGTGAACTTAGAGGAGGTTCTATCAACATTTCAAAGGAACAAAGATCACAACACAAAGTGGGAGTATGAGGCAGACATGCTTGCTGCATTTGCTAAGGATCCAGAGCTGTGCATGAAAGCTGTATGTGCTCTTTATAGACAGCAAACTTCTGAGGAAAAAATTTATAGGGAGACTTTCTGCTCCAATTCTCGAGGCTTTAGCAAGTTTGATGCTTCTAGGGGTTCTAAACTGGCTAGCTTTCTCACTGATGGAGACCCATATTGTGATCTGAGAAAAACCGTACAGGAGTTGGAGGAGCATGACCCAAAGGCCATTGAAACATGCAGAACATTTGCGACTCGTTACTCTAAGCAACTATTTGAGATCTACAAAAACAAAGAGGATCCTCTCTTTCTGCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

645

Amino Acids

72.06

Weight (kDa)

5.07

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	788
AciI	CCGC	1 cut(s)	1175
AclWI	GGATC	6 cut(s)	614, 1228, 1622, 1635, 1907, 1920
AcsI	RAATTY	2 cut(s)	734, 1689
AcuI	CTGAAG	2 cut(s)	78, 1178
AdeI	CACNNNGTG	1 cut(s)	1587
AfaI	GTAC	4 cut(s)	631, 670, 1464, 1812
AfiI	CCNNNNNNNGG	4 cut(s)	602, 782, 788, 1391
AjiI	CACGTC	1 cut(s)	384
AjnI	CCWGG	2 cut(s)	595, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
Alw21I	GWGCWC	1 cut(s)	1660
Alw26I	GTCTC	4 cut(s)	270, 1238, 1694, 1776
AlwI	GGATC	6 cut(s)	614, 1228, 1622, 1635, 1907, 1920
Ama87I	CYCGRG	1 cut(s)	1719
AoxI	GGCC	1 cut(s)	1839
ApeKI	GCWGC	2 cut(s)	1236, 1613
ApoI	RAATTY	2 cut(s)	734, 1689
ArsI	GACNNNNNNTTYG	2 cut(s)	1502, 1534
AspLEI	GCGC	1 cut(s)	1339
AspS9I	GGNCC	1 cut(s)	1382
AsuHPI	GGTGA	1 cut(s)	209
AsuNHI	GCTAGC	1 cut(s)	1763
AvaI	CYCGRG	1 cut(s)	1719
AvaII	GGWCC	1 cut(s)	1382
BamHI	GGATCC	2 cut(s)	1627, 1912
BanII	GRGCYC	1 cut(s)	1413
BbsI	GAAGAC	2 cut(s)	335, 386
Bbv12I	GWGCWC	1 cut(s)	1660
BbvI	GCAGC	2 cut(s)	1248, 1600
BccI	CCATC	6 cut(s)	154, 224, 500, 621, 760, 1772
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	2 cut(s)	597, 783
BclI	TGATCA	3 cut(s)	976, 1135, 1210
BcoDI	GTCTC	4 cut(s)	270, 1238, 1694, 1776
BfaI	CTAG	4 cut(s)	27, 1500, 1746, 1764
BfuAI	ACCTGC	1 cut(s)	617
BglII	AGATCT	3 cut(s)	686, 985, 1893
BisI	GCNGC	2 cut(s)	1237, 1614
BlsI	GCNGC	2 cut(s)	1238, 1615
Bme1390I	CCNGG	2 cut(s)	597, 783
Bme18I	GGWCC	1 cut(s)	1382
BmeT110I	CYCGRG	1 cut(s)	1719
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	1382
BmiI	GGNNCC	3 cut(s)	771, 1629, 1914
BmrFI	CCNGG	2 cut(s)	597, 783
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	4 cut(s)	667, 1198, 1483, 1729
BmtI	GCTAGC	1 cut(s)	1767
BmuI	ACTGGG	1 cut(s)	456
BoxI	GACNNNNGTC	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	335, 386
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	1623
BpuEI	CTTGAG	4 cut(s)	140, 320, 521, 1333
BsaI	GGTCTC	1 cut(s)	1776
BsaJI	CCNNGG	2 cut(s)	434, 595
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 95, 267, 297, 419, 449
Bsc4I	CCNNNNNNNGG	4 cut(s)	602, 782, 788, 1391
Bse1I	ACTGG	4 cut(s)	451, 1017, 1059, 1764
BseBI	CCWGG	2 cut(s)	597, 783
BseDI	CCNNGG	2 cut(s)	434, 595
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	4 cut(s)	602, 782, 788, 1391
BseMII	CTCAG	6 cut(s)	333, 867, 1059, 1134, 1671, 1790
BseNI	ACTGG	4 cut(s)	451, 1017, 1059, 1764
BseRI	GAGGAG	5 cut(s)	61, 64, 86, 1556, 1838
BseXI	GCAGC	2 cut(s)	1248, 1600
BshFI	GGCC	1 cut(s)	1841
BsiHKAI	GWGCWC	1 cut(s)	1660
BsiHKCI	CYCGRG	1 cut(s)	1719
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	4 cut(s)	602, 782, 788, 1391
BsmAI	GTCTC	4 cut(s)	270, 1238, 1694, 1776
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	2 cut(s)	1116, 1191
BsnI	GGCC	1 cut(s)	1841
Bso31I	GGTCTC	1 cut(s)	1776
BsoBI	CYCGRG	1 cut(s)	1719
Bsp1286I	GDGCHC	2 cut(s)	1413, 1660
Bsp1407I	TGTACA	1 cut(s)	1462
BspACI	CCGC	1 cut(s)	1175
BspANI	GGCC	1 cut(s)	1841
BspCNI	CTCAG	6 cut(s)	334, 868, 1060, 1135, 1672, 1791
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	3 cut(s)	771, 1629, 1914
BspMI	ACCTGC	1 cut(s)	617
BspOI	GCTAGC	1 cut(s)	1767
BspPI	GGATC	6 cut(s)	614, 1228, 1622, 1635, 1907, 1920
BspTNI	GGTCTC	1 cut(s)	1776
BsrGI	TGTACA	1 cut(s)	1462
BsrI	ACTGG	4 cut(s)	451, 1017, 1059, 1764
BssECI	CCNNGG	2 cut(s)	434, 595
Bst2UI	CCWGG	2 cut(s)	597, 783
Bst4CI	ACNGT	2 cut(s)	971, 1810
Bst6I	CTCTTC	6 cut(s)	54, 89, 162, 179, 1321, 1410
BstAUI	TGTACA	1 cut(s)	1462
BstC8I	GCNNGC	5 cut(s)	156, 466, 957, 1611, 1765
BstDSI	CCRYGG	1 cut(s)	434
BstENI	CCTNNNNNAGG	2 cut(s)	600, 780
BstF5I	GGATG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	1339
BstMAI	GTCTC	4 cut(s)	270, 1238, 1694, 1776
BstMWI	GCNNNNNNNGC	2 cut(s)	1619, 1655
BstNI	CCWGG	2 cut(s)	597, 783
BstNSI	RCATGY	2 cut(s)	1609, 1854
BstPAI	GACNNNNGTC	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	595, 781
BstV1I	GCAGC	2 cut(s)	1248, 1600
BstV2I	GAAGAC	2 cut(s)	335, 386
BstX2I	RGATCY	7 cut(s)	606, 686, 985, 1220, 1627, 1893, 1912
BstYI	RGATCY	7 cut(s)	606, 686, 985, 1220, 1627, 1893, 1912
BsuRI	GGCC	1 cut(s)	1841
BtgI	CCRYGG	1 cut(s)	434
BtgZI	GCGATG	2 cut(s)	173, 846
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	1066, 1773
BveI	ACCTGC	1 cut(s)	617
Cac8I	GCNNGC	5 cut(s)	156, 466, 957, 1611, 1765
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	1339
Cfr13I	GGNCC	1 cut(s)	1382
Csp6I	GTAC	4 cut(s)	630, 669, 1463, 1811
CviAII	CATG	8 cut(s)	529, 974, 1133, 1208, 1606, 1642, 1829, 1851
CviQI	GTAC	4 cut(s)	630, 669, 1463, 1811
DraI	TTTAAA	1 cut(s)	951
DraIII	CACNNNGTG	1 cut(s)	1587
Eam1104I	CTCTTC	6 cut(s)	54, 89, 162, 179, 1321, 1410
EarI	CTCTTC	6 cut(s)	54, 89, 162, 179, 1321, 1410
Eco24I	GRGCYC	1 cut(s)	1413
Eco31I	GGTCTC	1 cut(s)	1776
Eco47I	GGWCC	1 cut(s)	1382
Eco57I	CTGAAG	2 cut(s)	78, 1178
Eco88I	CYCGRG	1 cut(s)	1719
EcoNI	CCTNNNNNAGG	2 cut(s)	600, 780
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	595, 781
EcoT22I	ATGCAT	2 cut(s)	1116, 1191
EcoT38I	GRGCYC	1 cut(s)	1413
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	8 cut(s)	532, 977, 1136, 1211, 1609, 1645, 1832, 1854
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	8 cut(s)	528, 973, 1132, 1207, 1605, 1641, 1828, 1850
FbaI	TGATCA	3 cut(s)	976, 1135, 1210
Fnu4HI	GCNGC	2 cut(s)	1237, 1614
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	1413
Fsp4HI	GCNGC	2 cut(s)	1237, 1614
FspBI	CTAG	4 cut(s)	27, 1500, 1746, 1764
GlaI	GCGC	1 cut(s)	1338
GluI	GCNGC	2 cut(s)	1237, 1614
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	1841
HhaI	GCGC	1 cut(s)	1339
Hin1II	CATG	8 cut(s)	532, 977, 1136, 1211, 1609, 1645, 1832, 1854
Hin6I	GCGC	1 cut(s)	1337
HinP1I	GCGC	1 cut(s)	1337
HincII	GTYRAC	1 cut(s)	1399
HindII	GTYRAC	1 cut(s)	1399
HindIII	AAGCTT	4 cut(s)	128, 152, 943, 1444
HinfI	GANTC	7 cut(s)	452, 751, 880, 914, 1064, 1505, 1867
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	632, 1399, 1534
Hpy8I	GTNNAC	3 cut(s)	632, 1399, 1534
Hpy99I	CGWCG	1 cut(s)	1299
HpyAV	CCTTC	2 cut(s)	137, 1430
HpyCH4III	ACNGT	2 cut(s)	971, 1810
HpyCH4IV	ACGT	2 cut(s)	383, 1297
HpyCH4V	TGCA	9 cut(s)	619, 759, 903, 1100, 1114, 1189, 1616, 1641, 1854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1619, 1655
HpySE526I	ACGT	2 cut(s)	383, 1297
Hsp92II	CATG	8 cut(s)	532, 977, 1136, 1211, 1609, 1645, 1832, 1854
HspAI	GCGC	1 cut(s)	1337
Ksp22I	TGATCA	3 cut(s)	976, 1135, 1210
LmnI	GCTCC	4 cut(s)	543, 775, 1715, 1825
Lsp1109I	GCAGC	2 cut(s)	1248, 1600
LweI	GCATC	4 cut(s)	667, 1198, 1483, 1729
MaeI	CTAG	4 cut(s)	27, 1500, 1746, 1764
MaeII	ACGT	2 cut(s)	383, 1297
MaeIII	GTNAC	7 cut(s)	643, 824, 841, 1054, 1061, 1279, 1871
MflI	RGATCY	7 cut(s)	606, 686, 985, 1220, 1627, 1893, 1912
MhlI	GDGCHC	2 cut(s)	1413, 1660
MluCI	AATT	8 cut(s)	179, 201, 374, 734, 994, 1007, 1689, 1714
MlyI	GAGTC	4 cut(s)	760, 1058, 1514, 1861
MmeI	TCCRAC	4 cut(s)	63, 294, 499, 1800
Mph1103I	ATGCAT	2 cut(s)	1116, 1191
MseI	TTAA	5 cut(s)	126, 216, 255, 443, 950
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	730
MspR9I	CCNGG	2 cut(s)	597, 783
Mva1269I	GAATGC	2 cut(s)	1116, 1191
MvaI	CCWGG	2 cut(s)	597, 783
MwoI	GCNNNNNNNGC	2 cut(s)	1619, 1655
NheI	GCTAGC	1 cut(s)	1763
NlaIII	CATG	8 cut(s)	532, 977, 1136, 1211, 1609, 1645, 1832, 1854
NlaIV	GGNNCC	3 cut(s)	771, 1629, 1914
NmuCI	GTSAC	3 cut(s)	824, 1054, 1061
NsiI	ATGCAT	2 cut(s)	1116, 1191
NspI	RCATGY	2 cut(s)	1609, 1854
PaeR7I	CTCGAG	1 cut(s)	1719
PagI	TCATGA	1 cut(s)	973
PctI	GAATGC	2 cut(s)	1116, 1191
PfeI	GAWTC	3 cut(s)	452, 880, 914
PflFI	GACNNNGTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	788
PkrI	GCNGC	2 cut(s)	1238, 1615
PleI	GAGTC	4 cut(s)	759, 1058, 1513, 1861
PpsI	GAGTC	4 cut(s)	759, 1058, 1513, 1861
PshAI	GACNNNNGTC	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	595, 781
PspGI	CCWGG	2 cut(s)	595, 781
PspN4I	GGNNCC	3 cut(s)	771, 1629, 1914
PspPI	GGNCC	1 cut(s)	1382
PsuI	RGATCY	7 cut(s)	606, 686, 985, 1220, 1627, 1893, 1912
PsyI	GACNNNGTC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	4 cut(s)	631, 670, 1464, 1812
RsaNI	GTAC	4 cut(s)	630, 669, 1463, 1811
RseI	CAYNNNNRTG	1 cut(s)	663
SaqAI	TTAA	5 cut(s)	126, 216, 255, 443, 950
SatI	GCNGC	2 cut(s)	1237, 1614
Sau96I	GGNCC	1 cut(s)	1382
SchI	GAGTC	4 cut(s)	760, 1058, 1514, 1861
ScrFI	CCNGG	2 cut(s)	597, 783
SduI	GDGCHC	2 cut(s)	1413, 1660
SfaNI	GCATC	4 cut(s)	667, 1198, 1483, 1729
Sfr274I	CTCGAG	1 cut(s)	1719
SinI	GGWCC	1 cut(s)	1382
SlaI	CTCGAG	1 cut(s)	1719
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	5 cut(s)	119, 299, 500, 1348, 1719
SmoI	CTYRAG	5 cut(s)	119, 299, 500, 1348, 1719
Sse9I	AATT	8 cut(s)	179, 201, 374, 734, 994, 1007, 1689, 1714
SsiI	CCGC	1 cut(s)	1175
SspI	AATATT	1 cut(s)	1087
SspMI	CTAG	4 cut(s)	27, 1500, 1746, 1764
StyD4I	CCNGG	2 cut(s)	595, 781
TaaI	ACNGT	2 cut(s)	971, 1810
TaiI	ACGT	2 cut(s)	386, 1300
TaqI	TCGA	4 cut(s)	715, 990, 1378, 1720
TasI	AATT	8 cut(s)	179, 201, 374, 734, 994, 1007, 1689, 1714
TatI	WGTACW	1 cut(s)	1462
TfiI	GAWTC	3 cut(s)	452, 880, 914
Tru1I	TTAA	5 cut(s)	126, 216, 255, 443, 950
Tru9I	TTAA	5 cut(s)	126, 216, 255, 443, 950
TscAI	CASTG	2 cut(s)	1066, 1780
TseFI	GTSAC	3 cut(s)	824, 1054, 1061
TseI	GCWGC	2 cut(s)	1236, 1613
Tsp45I	GTSAC	3 cut(s)	824, 1054, 1061
TspDTI	ATGAA	4 cut(s)	126, 501, 852, 1658
TspGWI	ACGGA	2 cut(s)	251, 423
TspRI	CASTG	2 cut(s)	1066, 1780
Tth111I	GACNNNGTC	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	1 cut(s)	1382
XagI	CCTNNNNNAGG	2 cut(s)	600, 780
XapI	RAATTY	2 cut(s)	734, 1689
XceI	RCATGY	2 cut(s)	1609, 1854
XhoI	CTCGAG	1 cut(s)	1719
XspI	CTAG	4 cut(s)	27, 1500, 1746, 1764
Zsp2I	ATGCAT	2 cut(s)	1116, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.