Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Reverse (-)

26043052 .. 26044765

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGGTAATGGAATGTGAAGATGTCGCCGGTGCCCGTTGTGGAAAGGGGTTGGATGGGTGTGGGGATAGTGAACTGGAGAACAGGAGCAAGAGAGCTGAGGAGAGGTGTGTGGAGTTAGAGCTGGAGATTGTAAAGAGAGAGTGTGAGTATGCAGCTCTGGAGGCCGAGTTTCGGGCATTGGAGCGCGAAAAGATTGCGATGGAAGAAGAGATCAAGGCTTTGAGGAGGGAGAGTGGTGGAGATGAAAAGAAGAAAAATCGTGGGGGTGAAAAAGGGGAGGGAATTGGTGATCTGACGGAGGAGAACGGGGAGGAAGACAAGGTCTGTCAGCTAATGGTTGAGATTAAAGAATTGGAGTGTGAGAAGAAAAAGGCTGAAAGCGAGGTTGAGGCTTGGAAGCAAAAGTTCAAGGAACTGGAATCGTTGGTCTTGAAAGGCGGGGAATTGCCGTTGGATAGATGGATGAAGGTGGCAGGGGTAGGATCGCTAAATGTGGATTCTCTTGAAGACAGCGGGACTGTGCAGTTGAATAAAAGGATTAAACTTGCCGATGAATTGCAAGTTGAAGGTGGCTTGGAGTATTCCAGAGACAAAGATATGGCTGTGGATGGGGTGGATGTTGGCTCTACATGTCTCCCCCTCGGTAAAGAGATCGGAAATTTGCAGTCAGCAGGCACTCCGTGCAATGACACACCGTGCAAGCATTGGGATGGTATTAAGGGAGAGAATAAACGTGTCTGTGTGCAGTCTGATATGAAATATTCTACCAGCAGACAAGCTAGGAAACGGTTGGAATTCGACAAAGAGGGGAGTCCTTGCAAGAAGATGGCTCCATGTACGCCTGGTGGTGGCATACCTTCTTCTCTCACTATCGTCAATATTAGTGATAGTGATGATGAACTTTTGCCTGCAAATAATCAGGAAAGCAGAAAGGTCTGCATTTCGTCGGGTTCAGTATTAGGAGAAACTGGGGGTTGTGAAAAAGATATGACTACCAAAATATGTGCTGAGGAAGATGTTGATAACATCAATGAGGGCCTGCTTGCCTCAAAACCCAAAAGAAAGCGTGCTCTTAATATTGTTACCAGTGACTCGGAAAGTAGTGATGATGATATTCCTATCGGACAACTCAAGAAAATGCATCTTAAGGAAATTATACATGACAAAGTAGGATCGATCTCAATGACAGCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

43.8

Weight (kDa)

4.86

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	441, 516
AclWI	GGATC	2 cut(s)	493, 1183
AcsI	RAATTY	2 cut(s)	661, 797
AdeI	CACNNNGTG	2 cut(s)	684, 699
AfaI	GTAC	1 cut(s)	841
AfiI	CCNNNNNNNGG	2 cut(s)	174, 851
AflII	CTTAAG	1 cut(s)	1148
AflIII	ACRYGT	2 cut(s)	632, 736
AgsI	TTSAA	5 cut(s)	412, 436, 509, 532, 569
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	6 cut(s)	98, 124, 158, 334, 782, 1193
AluI	AGCT	6 cut(s)	98, 124, 158, 334, 782, 1193
Alw21I	GWGCWC	1 cut(s)	1075
Alw26I	GTCTC	2 cut(s)	585, 641
AlwI	GGATC	2 cut(s)	493, 1183
AoxI	GGCC	2 cut(s)	165, 1039
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	661, 797
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	1039
AsuHPI	GGTGA	2 cut(s)	281, 302
BaeGI	GKGCMC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	324, 516
Bbv12I	GWGCWC	1 cut(s)	1075
BbvCI	CCTCAGC	2 cut(s)	99, 1011
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	6 cut(s)	50, 196, 456, 605, 707, 823
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	846
BcoDI	GTCTC	2 cut(s)	585, 641
BfaI	CTAG	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	1148
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	1039
BmiI	GGNNCC	2 cut(s)	34, 834
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	981
BmsI	GCATC	1 cut(s)	1153
BmuI	ACTGGG	1 cut(s)	981
BpiI	GAAGAC	2 cut(s)	324, 516
BpmI	CTGGAG	3 cut(s)	98, 146, 182
Bpu10I	CCTNAGC	2 cut(s)	99, 1011
BpuEI	CTTGAG	1 cut(s)	1118
Bsa29I	ATCGAT	1 cut(s)	1178
BsaJI	CCNNGG	1 cut(s)	643
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 220, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 851
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	4 cut(s)	81, 423, 976, 1089
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	846
BseCI	ATCGAT	1 cut(s)	1178
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	5 cut(s)	61, 471, 616, 625, 718
BseLI	CCNNNNNNNGG	2 cut(s)	174, 851
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	90, 1002
BseNI	ACTGG	4 cut(s)	81, 423, 976, 1089
BseRI	GAGGAG	3 cut(s)	116, 241, 317
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	167
BsgI	GTGCAG	2 cut(s)	545, 767
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	167, 1041
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	1178
BsiHKAI	GWGCWC	1 cut(s)	1075
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	174, 851
BsmAI	GTCTC	2 cut(s)	585, 641
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	167, 1041
Bsp1286I	GDGCHC	2 cut(s)	37, 1075
Bsp143I	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
BspACI	CCGC	2 cut(s)	441, 516
BspANI	GGCC	2 cut(s)	167, 1041
BspCNI	CTCAG	2 cut(s)	91, 1003
BspDI	ATCGAT	1 cut(s)	1178
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	34, 834
BspPI	GGATC	2 cut(s)	493, 1183
BspT107I	GGYRCC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	1148
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	4 cut(s)	81, 423, 976, 1089
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	3 cut(s)	523, 699, 792
Bst6I	CTCTTC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	1148
BstAPI	GCANNNNNTGC	1 cut(s)	684
BstC8I	GCNNGC	6 cut(s)	676, 704, 912, 1043, 1047, 1071
BstDEI	CTNAG	3 cut(s)	99, 1011, 1194
BstF5I	GGATG	5 cut(s)	61, 471, 616, 625, 718
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	6 cut(s)	216, 295, 488, 657, 1178, 1182
BstMAI	GTCTC	2 cut(s)	585, 641
BstMBI	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 684
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	844
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	2 cut(s)	324, 516
Bsu15I	ATCGAT	1 cut(s)	1178
BsuRI	GGCC	2 cut(s)	167, 1041
BsuTUI	ATCGAT	1 cut(s)	1178
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	5 cut(s)	61, 471, 616, 625, 718
BtsIMutI	CAGTG	1 cut(s)	1096
Cac8I	GCNNGC	6 cut(s)	676, 704, 912, 1043, 1047, 1071
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	1039
ClaI	ATCGAT	1 cut(s)	1178
Csp6I	GTAC	1 cut(s)	840
CviAII	CATG	3 cut(s)	633, 837, 1163
CviQI	GTAC	1 cut(s)	840
DdeI	CTNAG	3 cut(s)	99, 1011, 1194
DpnI	GATC	6 cut(s)	215, 294, 487, 656, 1177, 1181
DpnII	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
DraIII	CACNNNGTG	2 cut(s)	684, 699
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	1039
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	1146
FaeI	CATG	3 cut(s)	636, 840, 1166
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	3 cut(s)	632, 836, 1162
FauI	CCCGC	2 cut(s)	434, 509
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	5 cut(s)	68, 478, 623, 632, 725
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	3 cut(s)	98, 146, 182
HaeIII	GGCC	2 cut(s)	167, 1041
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	636, 840, 1166
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	422, 500, 814, 1094
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	281, 302
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	297, 659, 754, 1099, 1127
Hpy188III	TCNNGA	6 cut(s)	161, 433, 506, 588, 923, 1135
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	3 cut(s)	463, 563, 870
HpyCH4III	ACNGT	3 cut(s)	523, 699, 792
HpyCH4IV	ACGT	1 cut(s)	736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 684
HpyF3I	CTNAG	3 cut(s)	99, 1011, 1194
HpySE526I	ACGT	1 cut(s)	736
Hsp92II	CATG	3 cut(s)	636, 840, 1166
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
LmnI	GCTCC	3 cut(s)	87, 184, 838
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	1153
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	2 cut(s)	1084, 1091
MalI	GATC	6 cut(s)	215, 294, 487, 656, 1177, 1181
MboI	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
MhlI	GDGCHC	2 cut(s)	37, 1075
MluCI	AATT	7 cut(s)	285, 353, 446, 557, 661, 797, 1155
MlyI	GAGTC	2 cut(s)	823, 1088
MmeI	TCCRAC	3 cut(s)	33, 435, 774
Mph1103I	ATGCAT	1 cut(s)	1146
MseI	TTAA	5 cut(s)	348, 543, 720, 1077, 1149
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	516
MspCI	CTTAAG	1 cut(s)	1148
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	164, 684
NdeII	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
NlaIII	CATG	3 cut(s)	636, 840, 1166
NlaIV	GGNNCC	2 cut(s)	34, 834
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	1091
NsiI	ATGCAT	1 cut(s)	1146
NspI	RCATGY	1 cut(s)	636
PciI	ACATGT	1 cut(s)	632
PfeI	GAWTC	2 cut(s)	422, 500
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	822, 1088
PpsI	GAGTC	2 cut(s)	822, 1088
PscI	ACATGT	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	34, 834
PspPI	GGNCC	1 cut(s)	1039
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	1 cut(s)	841
RsaNI	GTAC	1 cut(s)	840
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	5 cut(s)	348, 543, 720, 1077, 1149
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	6 cut(s)	213, 292, 485, 654, 1175, 1179
Sau96I	GGNCC	1 cut(s)	1039
SchI	GAGTC	2 cut(s)	823, 1088
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	2 cut(s)	37, 1075
SfaNI	GCATC	1 cut(s)	1153
SgrAI	CRCCGGYG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	1133, 1148
SmoI	CTYRAG	2 cut(s)	1133, 1148
Sse9I	AATT	7 cut(s)	285, 353, 446, 557, 661, 797, 1155
SsiI	CCGC	2 cut(s)	441, 516
SspI	AATATT	3 cut(s)	764, 883, 1081
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	844
TaaI	ACNGT	3 cut(s)	523, 699, 792
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	2 cut(s)	801, 1178
TasI	AATT	7 cut(s)	285, 353, 446, 557, 661, 797, 1155
TfiI	GAWTC	2 cut(s)	422, 500
Tru1I	TTAA	5 cut(s)	348, 543, 720, 1077, 1149
Tru9I	TTAA	5 cut(s)	348, 543, 720, 1077, 1149
TscAI	CASTG	1 cut(s)	1096
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	5 cut(s)	261, 482, 570, 773, 915
TspGWI	ACGGA	2 cut(s)	314, 672
TspRI	CASTG	1 cut(s)	1096
Tth111I	GACNNNGTC	1 cut(s)	323
Vha464I	CTTAAG	1 cut(s)	1148
XapI	RAATTY	2 cut(s)	661, 797
XceI	RCATGY	1 cut(s)	636
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.