Rh1AG442100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004464
Physical Location & Seq
Reverse (-)
66359846 .. 66366136
6291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG442100.1

Sequence Viewer

Length: 750 bp
ATGCGTCTTCAGGAAAGAATAAATGATGAAGTAGGATCTGATGTGAATGGCAGCTTAGAGACTGCTACTGCTTCTGTAGTTGATGATGTTAGTGTTTCCTCTCCAAAGCGGCATCTAGTTAGGTTGAGAAAATGTGGGGGAAGAGGTCGGGCACAAAGGAATGCAAGTCAGACAAGTGAAACTAAAAATGACCAAGGACCGAACAAGGCTGTTGAAGAAGATGAACCCGAAGAGGTTGGGTCAGAAAGTGAAGGTGAAAGCTTGGGTGGGTTTATTGTGAATAGCTCTGGTGTTTCAGAAAGTAATGATGCTTCTAGTAAGTCAAATAGTATGTCAGATGATGATGTGAACTTTGAGGAGGTTCTATCAACATTTCAAAGGAACAAAGATCACAACACAAAGTGGGAGTTTGAGGCAGACATGCTTGCTGCATTCGGTAAGGATCCAGAGCTGTGCATGAAAGCTGTATGTGCTCTTTATAGACAGCAAACTGCTGATGAACGAGTTAGTATGGCGAGTTTGTGCTACAATTCTCGAGGCTTTAGCAAGTTTGATGCTTTCAGGGGCTCTGACTTGGCTGAATTTATCACTGATGGAGACCCATATGGTGATCTGACTAAAACCGTAGAGGAGTTGGAGGAGTTTGACCCCAAGGCCATTGAAACATGTAGAACACTTGCGACTCGTTACTCTAAGCAACTATTTGAGATCTACAGAAACAAAGAGGATCCTCTCTTTCTGCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.66

Weight (kDa)

4.59

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 109
AclWI GGATC 5 cut(s) 43, 437, 450, 722, 735
AcsI RAATTY 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 402
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 215, 377, 662
AluBI AGCT 5 cut(s) 54, 261, 285, 451, 464
AluI AGCT 5 cut(s) 54, 261, 285, 451, 464
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 53, 591
AlwI GGATC 5 cut(s) 43, 437, 450, 722, 735
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 2 cut(s) 51, 428
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 266, 620
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 154
BamHI GGATCC 2 cut(s) 442, 727
BanII GRGCYC 1 cut(s) 569
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 63, 415
BccI CCATC 1 cut(s) 587
BcoDI GTCTC 2 cut(s) 53, 591
BfaI CTAG 2 cut(s) 116, 315
BfmI CTRYAG 2 cut(s) 75, 712
BglII AGATCT 1 cut(s) 708
BisI GCNGC 3 cut(s) 52, 110, 429
BlsI GCNGC 3 cut(s) 53, 111, 430
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 444, 729
BmsI GCATC 3 cut(s) 121, 298, 544
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 193, 651
BseDI CCNNGG 2 cut(s) 193, 651
BseRI GAGGAG 3 cut(s) 371, 644, 653
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 2 cut(s) 63, 415
BshFI GGCC 1 cut(s) 656
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 534
BsmAI GTCTC 2 cut(s) 53, 591
BsmI GAATGC 2 cut(s) 166, 431
BsnI GGCC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 3 cut(s) 154, 475, 569
Bsp143I GATC 6 cut(s) 35, 388, 442, 610, 708, 727
BspACI CCGC 1 cut(s) 109
BspANI GGCC 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 444, 729
BspPI GGATC 5 cut(s) 43, 437, 450, 722, 735
BspTNI GGTCTC 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 193, 651
BssMI GATC 6 cut(s) 35, 388, 442, 610, 708, 727
BssT1I CCWWGG 2 cut(s) 193, 651
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 2 cut(s) 136, 225
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 55, 693
BstKTI GATC 6 cut(s) 38, 391, 445, 613, 711, 730
BstMAI GTCTC 2 cut(s) 53, 591
BstMBI GATC 6 cut(s) 35, 388, 442, 610, 708, 727
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNSI RCATGY 2 cut(s) 424, 669
BstSFI CTRYAG 2 cut(s) 75, 712
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 63, 415
BstX2I RGATCY 4 cut(s) 35, 442, 708, 727
BstYI RGATCY 4 cut(s) 35, 442, 708, 727
BsuRI GGCC 1 cut(s) 656
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 3 cut(s) 421, 457, 666
DdeI CTNAG 2 cut(s) 55, 693
DpnI GATC 6 cut(s) 37, 390, 444, 612, 710, 729
DpnII GATC 6 cut(s) 35, 388, 442, 610, 708, 727
DraIII CACNNNGTG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 136, 225
EarI CTCTTC 2 cut(s) 136, 225
Eco130I CCWWGG 2 cut(s) 193, 651
Eco24I GRGCYC 1 cut(s) 569
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 534
EcoT14I CCWWGG 2 cut(s) 193, 651
EcoT38I GRGCYC 1 cut(s) 569
ErhI CCWWGG 2 cut(s) 193, 651
FaeI CATG 3 cut(s) 424, 460, 669
FaiI YATR 9 cut(s) 332, 422, 458, 469, 480, 512, 604, 606, 667
FatI CATG 3 cut(s) 420, 456, 665
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 52, 110, 429
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 3 cut(s) 52, 110, 429
FspBI CTAG 2 cut(s) 116, 315
GluI GCNGC 3 cut(s) 52, 110, 429
HaeIII GGCC 1 cut(s) 656
Hin1II CATG 3 cut(s) 424, 460, 669
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 1 cut(s) 682
HphI GGTGA 2 cut(s) 266, 620
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 7 cut(s) 40, 171, 244, 298, 337, 571, 615
Hpy188III TCNNGA 4 cut(s) 11, 446, 534, 747
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4V TGCA 3 cut(s) 164, 431, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 55, 693
Hsp92II CATG 3 cut(s) 424, 460, 669
Kzo9I GATC 6 cut(s) 35, 388, 442, 610, 708, 727
LpnPI CCDG 3 cut(s) 273, 459, 547
Lsp1109I GCAGC 2 cut(s) 63, 415
LweI GCATC 3 cut(s) 121, 298, 544
MaeI CTAG 2 cut(s) 116, 315
MaeIII GTNAC 1 cut(s) 686
MalI GATC 6 cut(s) 37, 390, 444, 612, 710, 729
MboI GATC 6 cut(s) 35, 388, 442, 610, 708, 727
MboII GAAGA 4 cut(s) 153, 227, 230, 242
MflI RGATCY 4 cut(s) 35, 442, 708, 727
MhlI GDGCHC 3 cut(s) 154, 475, 569
MluCI AATT 2 cut(s) 529, 581
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 166, 431
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeI CATATG 1 cut(s) 604
NdeII GATC 6 cut(s) 35, 388, 442, 610, 708, 727
NlaIII CATG 3 cut(s) 424, 460, 669
NlaIV GGNNCC 2 cut(s) 444, 729
NspI RCATGY 2 cut(s) 424, 669
PaeR7I CTCGAG 1 cut(s) 534
PciI ACATGT 1 cut(s) 665
PctI GAATGC 2 cut(s) 166, 431
PkrI GCNGC 3 cut(s) 53, 111, 430
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
PscI ACATGT 1 cut(s) 665
PspN4I GGNNCC 2 cut(s) 444, 729
PspPI GGNCC 1 cut(s) 197
PsuI RGATCY 4 cut(s) 35, 442, 708, 727
SatI GCNGC 3 cut(s) 52, 110, 429
Sau3AI GATC 6 cut(s) 35, 388, 442, 610, 708, 727
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 676
SduI GDGCHC 3 cut(s) 154, 475, 569
SfaNI GCATC 3 cut(s) 121, 298, 544
SfcI CTRYAG 2 cut(s) 75, 712
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 2 cut(s) 529, 581
SsiI CCGC 1 cut(s) 109
SspMI CTAG 2 cut(s) 116, 315
StyI CCWWGG 2 cut(s) 193, 651
TaaI ACNGT 1 cut(s) 625
TaqI TCGA 1 cut(s) 535
TaqII GACCGA 1 cut(s) 214
TasI AATT 2 cut(s) 529, 581
TauI GCSGC 1 cut(s) 112
TscAI CASTG 1 cut(s) 595
TseI GCWGC 2 cut(s) 51, 428
TspDTI ATGAA 4 cut(s) 42, 237, 473, 513
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 581
XceI RCATGY 2 cut(s) 424, 669
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 2 cut(s) 116, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.