Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Forward (+)

21595990 .. 21598316

Gene Structure 2327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGACCACACCGGTTAAAGACTATATATTAGGGAGAGACAGAGATAGAGACAGAGACACCATGTCTTCTCGGAGACGAGTGAATAAGATGTTGTCGTTTGAAGATGATGGTCACAAATTGACTGATGTAGTTGATTTATGTGATAGTGAAACAGAGCAGAGAAGTGAGGAGGAGGAATTTGCTGATGTTATGGATACTATAGAGGAGGCAAATATTGGTGAGAATTATGAAGATGAAGATGTGGAAGCTTGTGATGCTAACACAAGTAGTCCTCTTTCTAGGCGTAAGAGGAAGCGGGTTATTGCCAGCGATGATGATGATGATGCTGATGATGATGATGAAGATAATATACCGATTTCAATACTCAAGAATTTGAAACCAACTAACCAAGAGATGTCAGATTTGTTTGATACACCTAACAAAGGAGAGAGTGAGTCTAGAAGATTGAGTGGACAACGTCGAGTGTCGTCAAGACTGAATAAAAAGAGAGTTTCTGAAGAGGTATCTGCTTCAACAGAGAGACTTGTGGGAATCCCAACAACCGATAATGCCGAGGATGATGAGACAGAAGAAGAAGGTTCAGAGAGTGAGGGTGAGAGTTTAGATGGGTTTATTATCGATGATGATGATAGTCAGGAGTCTGTCAGTGAAAAGTCTGATGAAATCGGGGTAGAGGAATCCGATGGAGAAGTTGGTTATGCTGATGTTATGTCAAGGTTAAGGAGGGAGAAGAAACCCGAGAAGCGTAAATGGGAGTATGAGGCAGATATGTTGGCAGATTTCGGTAAAGATCCTGAGCTTTGTATGAGAGCGGTTTGTGTTCTGTTTAGGTTTCAAACAGAAGATGAAAAAGTGGAAAGATCAAGTCATGTCTCTAATGGTCGCGGTTTCAGCAAGGTTGACGCTGTAAGGGGCACTAGCATTGCACTGTTTCTGACGGATGGAGATTCCGCAGGCGATATGAAGAAATCCGTTGAGGAATTGAAAGTTTTTGACTTTAAAGGCGTAGAGAAATGCGAAGAATTAGCACGCAAATACTCTAAACAACTCTTCCAGATCTATAACAACAGAGAAGATCCATTCTTTACTCTTCCTCCATCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

41.87

Weight (kDa)

4.42

Isoelectric Point (pI)

66.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	812
AccII	CGCG	1 cut(s)	885
AciI	CCGC	4 cut(s)	295, 812, 885, 951
AclWI	GGATC	2 cut(s)	785, 1070
AcsI	RAATTY	2 cut(s)	176, 370
AcuI	CTGAAG	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	6 cut(s)	101, 360, 376, 513, 836, 985
AhdI	GACNNNNNGTC	1 cut(s)	61
AluBI	AGCT	2 cut(s)	248, 799
AluI	AGCT	2 cut(s)	248, 799
Alw26I	GTCTC	7 cut(s)	30, 42, 48, 67, 514, 557, 877
AlwI	GGATC	2 cut(s)	785, 1070
Ama87I	CYCGRG	1 cut(s)	737
ApoI	RAATTY	2 cut(s)	176, 370
AsiGI	ACCGGT	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	230, 605
AvaI	CYCGRG	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	917
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	5 cut(s)	101, 599, 677, 935, 1105
BciVI	GTATCC	1 cut(s)	187
BcoDI	GTCTC	7 cut(s)	30, 42, 48, 67, 514, 557, 877
BfaI	CTAG	3 cut(s)	279, 438, 918
BfmI	CTRYAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	1056
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	737
BmsI	GCATC	2 cut(s)	244, 313
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	1 cut(s)	1078
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse118I	RCCGGY	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	921
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	562, 946
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	786
BseRI	GAGGAG	3 cut(s)	182, 185, 218
BseSI	GKGCMC	1 cut(s)	917
Bsh1236I	CGCG	1 cut(s)	885
BshTI	ACCGGT	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	7 cut(s)	30, 42, 48, 67, 514, 557, 877
BsmBI	CGTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	917
Bsp143I	GATC	4 cut(s)	790, 860, 1056, 1075
BspACI	CCGC	4 cut(s)	295, 812, 885, 951
BspCNI	CTCAG	1 cut(s)	787
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	885
BspPI	GGATC	2 cut(s)	785, 1070
BsrBI	CCGCTC	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	4 cut(s)	790, 860, 1056, 1075
Bst4CI	ACNGT	1 cut(s)	930
Bst6I	CTCTTC	3 cut(s)	492, 1055, 1095
BstC8I	GCNNGC	3 cut(s)	307, 955, 1030
BstDEI	CTNAG	1 cut(s)	795
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	562, 946
BstFNI	CGCG	1 cut(s)	885
BstKTI	GATC	4 cut(s)	793, 863, 1059, 1078
BstMAI	GTCTC	7 cut(s)	30, 42, 48, 67, 514, 557, 877
BstMBI	GATC	4 cut(s)	790, 860, 1056, 1075
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 891
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	917
BstUI	CGCG	1 cut(s)	885
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	3 cut(s)	790, 1056, 1075
BstYI	RGATCY	3 cut(s)	790, 1056, 1075
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	618
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	562, 946
BtsIMutI	CAGTG	2 cut(s)	652, 926
Cac8I	GCNNGC	3 cut(s)	307, 955, 1030
Cfr10I	RCCGGY	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	618
CseI	GACGC	1 cut(s)	911
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	3 cut(s)	61, 869, 1104
CviJI	RGCY	2 cut(s)	248, 799
CviKI_1	RGCY	2 cut(s)	248, 799
DdeI	CTNAG	1 cut(s)	795
DpnI	GATC	4 cut(s)	792, 862, 1058, 1077
DpnII	GATC	4 cut(s)	790, 860, 1056, 1075
DraI	TTTAAA	1 cut(s)	1000
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	492, 1055, 1095
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	492, 1055, 1095
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	737
EcoNI	CCTNNNNNAGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	3 cut(s)	64, 872, 1107
FatI	CATG	3 cut(s)	60, 868, 1103
FauI	CCCGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	569, 953
FspBI	CTAG	3 cut(s)	279, 438, 918
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	911
Hin1II	CATG	3 cut(s)	64, 872, 1107
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	5 cut(s)	434, 531, 638, 677, 947
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	230, 605
Hpy166II	GTNNAC	2 cut(s)	452, 901
Hpy188I	TCNGA	7 cut(s)	72, 400, 496, 583, 658, 682, 936
Hpy188III	TCNNGA	6 cut(s)	367, 438, 471, 635, 794, 1054
Hpy8I	GTNNAC	2 cut(s)	452, 901
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	930
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	1 cut(s)	926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 891
HpyF3I	CTNAG	1 cut(s)	795
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	64, 872, 1107
Kzo9I	GATC	4 cut(s)	790, 860, 1056, 1075
LpnPI	CCDG	6 cut(s)	24, 319, 620, 807, 939, 1067
LweI	GCATC	2 cut(s)	244, 313
MaeI	CTAG	3 cut(s)	279, 438, 918
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	4 cut(s)	792, 862, 1058, 1077
MbiI	CCGCTC	1 cut(s)	812
MboI	GATC	4 cut(s)	790, 860, 1056, 1075
MflI	RGATCY	3 cut(s)	790, 1056, 1075
MhlI	GDGCHC	1 cut(s)	917
MluCI	AATT	6 cut(s)	116, 176, 223, 370, 980, 1022
MlyI	GAGTC	2 cut(s)	443, 647
MseI	TTAA	3 cut(s)	15, 719, 999
MslI	CAYNNNNRTG	1 cut(s)	1102
MspI	CCGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	2 cut(s)	254, 891
NdeII	GATC	4 cut(s)	790, 860, 1056, 1075
NlaIII	CATG	3 cut(s)	64, 872, 1107
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	531, 677, 947
PflFI	GACNNNGTC	1 cut(s)	456
PinAI	ACCGGT	1 cut(s)	10
PleI	GAGTC	2 cut(s)	442, 646
PpsI	GAGTC	2 cut(s)	442, 646
PsuI	RGATCY	3 cut(s)	790, 1056, 1075
PsyI	GACNNNGTC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	1102
SaqAI	TTAA	3 cut(s)	15, 719, 999
Sau3AI	GATC	4 cut(s)	790, 860, 1056, 1075
SchI	GAGTC	2 cut(s)	443, 647
SduI	GDGCHC	1 cut(s)	917
SetI	ASST	9 cut(s)	250, 418, 460, 504, 580, 719, 801, 833, 900
SfaNI	GCATC	2 cut(s)	244, 313
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	1102
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	6 cut(s)	116, 176, 223, 370, 980, 1022
SsiI	CCGC	4 cut(s)	295, 812, 885, 951
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	3 cut(s)	279, 438, 918
TaaI	ACNGT	1 cut(s)	930
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	460, 618
TasI	AATT	6 cut(s)	116, 176, 223, 370, 980, 1022
TfiI	GAWTC	3 cut(s)	531, 677, 947
Tru1I	TTAA	3 cut(s)	15, 719, 999
Tru9I	TTAA	3 cut(s)	15, 719, 999
TscAI	CASTG	2 cut(s)	652, 933
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	6 cut(s)	243, 249, 354, 675, 861, 977
TspGWI	ACGGA	2 cut(s)	953, 961
TspRI	CASTG	2 cut(s)	652, 933
Tth111I	GACNNNGTC	1 cut(s)	456
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	2 cut(s)	176, 370
XbaI	TCTAGA	1 cut(s)	437
XspI	CTAG	3 cut(s)	279, 438, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.