Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Reverse (-)

65960141 .. 65962617

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGGAGGTGGTGGAAGATTGTGGGGCTAGTGAGGTAGAAAATAGGAGGAGGAGAGTTGAAGAGAGGTGTGAGGAGTTAGAGTTGGAGATTGTGAAGAGAAAGAGTGAGTATGAAGATCTTGAGATTAAGTTTCGGGCTTTGGAAGGCGAAAAGCTTGCGATGGAAGAAGAGATTAGGGCATTGAAGAGAGGAAGTGATGAAATTAGGAAGCAAGCTAATGGGGGTGGAGATGGGACGGAGATAATAGTTGATTTTAATGAGGATAGCTTGGAGGGAGATGGGGTCTTTCAGCTTATGCTTGAGAACAAGGTGTTGGAGTGTGAGAAGAAGACTGCTGAAAGTGAGGTTGAGGCTTGGAAGCAGAAGTTCAAAGAATTGAAGACGTGGGTCTTGAAGTTGGACAAGGATTTAGTCTTGAAAGGTGGGGAGTTTCCGTGGAACTTAACTGAGGATTCCGTTGAAGCAAGCAGGAGAACACAACCGAATGAAAGGAGTGAACTTGAGGATGGGTTGAATGTTGGAGTTGGCATGGAAAGTTCAAGGAGCAAAGATATAGCTGTGAATGTTATTGATCTTAGTACACCTCCTAATGTTACACTTCATGAGCATCGCAGTGGTACCAAGAAAAAGAGATCTGGTAAGGAATATGGTAACGTTAGTCGAGCAAGAAAACAGCTGGAATTCAAGGAAGATAGGAGTCCTTGCAAGAAGATGGCTCCACCTACGCCAGGTGGTGGCAGACCTTTCTCTCTCAGTGTCATTGATATTAGTGACAGCGATGATGAAGTTACAATTGCCGATAACCAAAAAGTTTTGCCTACTGAGAATCAGGGAAGCAGAAAGATTTGCATATCATCAGATTCTGTAATAGGAGGTCTGGCTACCAAAAGCTTTTTAAAGCAGGCACATACTGACAGTCATGATCAGGAAGATCTCGATAATTACAATGAGGAATTACTGGCTTTCTCAACACCCAAAAGAAAACGAGCTTCTAATGTTGTGACCAGTGACTCTGAGAGTAGTGATGATAATATTCCTATCAATGCAGTCAAGAGAATGCATCTTCAGAAAAGAATACATGATCATTCTGAGAGTAGTGATGATAATGTTCCTATCAATGCGGTCAAGAGAATGCATCGTCAGAAAAGAATACACAATCAAGTAGGATCTGATGTGAATGCCAGCTTAGAGACTGCTGCTGCTTCTGTGGTTGATTATGTTAGTGTTACCTCTCCAAAGCGACATTTAGTTAGGTTAAGAAAATGTGGGGGAAGAGGTCGGGCGCAAAGGAATTCAAGTCAGACAAGTGAAACTAAAAATGATCGAGGACCAAACAAGGGTGTTGAAGAAGATGAGCCCGAAGTGGTTGGGTCAGAAAGTGAAGGTGAAAGCTTGGGTGGGTTTATTGTACACAGCTCTGATGTTTCAGAAAGTAATGATGCTTCTAGTGAGTCAAATAGTGTGTCAGATGATGATGTGAACTTAGAGGAGGTTCTATCAACATTTCAAAGGAACAAAGATCACAACACAAGGTGGGAGTATGAGGCAGACATGCTTTCTGCATTTGCTAAGGATCCAGAGCTGTGCATGAAAGCTGTATGTGCTCTTTATAGACAGCAAACTTCTGAGGAAAAAATGTATAGGGAGGCTTTATGCTCCAATTCTCGAGGCTTTAGCAAGTTTGATGCTTCTAGGGGTTCTAAATTGGCTAGCTTTCTCACTGATGGAGACCCATATTGTGATCTGAGAAAAACCGTAGAGGAGTTGGAGGAGCATGACCCCAAGGCCATTGAAACATGTAGAACATTTGCGACTCGTTACTCTAAGCAACTATTTGAGATCTACAAAAACAAAGAGGATCCTCTCTTTCTGCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

626

Amino Acids

70.39

Weight (kDa)

5.15

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	734
AciI	CCGC	1 cut(s)	1121
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	5 cut(s)	1174, 1568, 1581, 1853, 1866
AcsI	RAATTY	2 cut(s)	680, 1291
AcuI	CTGAAG	1 cut(s)	1049
AdeI	CACNNNGTG	1 cut(s)	1533
AfaI	GTAC	3 cut(s)	580, 619, 1410
AfiI	CCNNNNNNNGG	3 cut(s)	728, 734, 1337
AflIII	ACRYGT	1 cut(s)	1796
AjiI	CACGTC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	727
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
Alw21I	GWGCWC	1 cut(s)	1606
Alw26I	GTCTC	2 cut(s)	1184, 1722
AlwI	GGATC	5 cut(s)	1174, 1568, 1581, 1853, 1866
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	1665
AoxI	GGCC	1 cut(s)	1785
ApeKI	GCWGC	2 cut(s)	1196, 1199
ApoI	RAATTY	2 cut(s)	680, 1291
ArsI	GACNNNNNNTTYG	2 cut(s)	1448, 1480
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	1285
AspS9I	GGNCC	1 cut(s)	1328
AsuHPI	GGTGA	1 cut(s)	1397
AsuNHI	GCTAGC	1 cut(s)	1709
AvaI	CYCGRG	1 cut(s)	1665
AvaII	GGWCC	1 cut(s)	1328
BamHI	GGATCC	2 cut(s)	1573, 1858
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	1359
BarI	GAAGNNNNNNTAC	2 cut(s)	1426, 1458
BbsI	GAAGAC	2 cut(s)	335, 386
Bbv12I	GWGCWC	1 cut(s)	1606
BbvI	GCAGC	2 cut(s)	1183, 1186
BccI	CCATC	6 cut(s)	154, 224, 272, 500, 706, 1718
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	729
BclI	TGATCA	2 cut(s)	922, 1081
BcoDI	GTCTC	2 cut(s)	1184, 1722
BfaI	CTAG	4 cut(s)	27, 1446, 1692, 1710
BglII	AGATCT	4 cut(s)	115, 632, 931, 1839
BisI	GCNGC	2 cut(s)	1197, 1200
BlsI	GCNGC	2 cut(s)	1198, 1201
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	1328
BmeT110I	CYCGRG	1 cut(s)	1665
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	1328
BmiI	GGNNCC	4 cut(s)	619, 717, 1575, 1860
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	5 cut(s)	616, 1069, 1144, 1429, 1675
BmtI	GCTAGC	1 cut(s)	1713
BoxI	GACNNNNGTC	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	335, 386
Bpu10I	CCTNAGC	1 cut(s)	1569
BpuEI	CTTGAG	3 cut(s)	140, 320, 521
BsaI	GGTCTC	1 cut(s)	1722
BsaJI	CCNNGG	2 cut(s)	434, 1782
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 95, 267, 297, 419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	728, 734, 1337
Bse1I	ACTGG	2 cut(s)	963, 1005
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	2 cut(s)	434, 1782
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	728, 734, 1337
BseMII	CTCAG	7 cut(s)	438, 766, 813, 1005, 1080, 1617, 1736
BseNI	ACTGG	2 cut(s)	963, 1005
BseRI	GAGGAG	6 cut(s)	61, 64, 86, 1502, 1775, 1784
BseXI	GCAGC	2 cut(s)	1183, 1186
BshFI	GGCC	1 cut(s)	1787
BshNI	GGYRCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	1606
BsiHKCI	CYCGRG	1 cut(s)	1665
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	728, 734, 1337
BsmAI	GTCTC	2 cut(s)	1184, 1722
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	3 cut(s)	1062, 1137, 1183
BsnI	GGCC	1 cut(s)	1787
Bso31I	GGTCTC	1 cut(s)	1722
BsoBI	CYCGRG	1 cut(s)	1665
Bsp1286I	GDGCHC	2 cut(s)	1359, 1606
Bsp1407I	TGTACA	1 cut(s)	1408
BspACI	CCGC	1 cut(s)	1121
BspANI	GGCC	1 cut(s)	1787
BspCNI	CTCAG	7 cut(s)	439, 765, 814, 1006, 1081, 1618, 1737
BspHI	TCATGA	2 cut(s)	601, 919
BspLI	GGNNCC	4 cut(s)	619, 717, 1575, 1860
BspOI	GCTAGC	1 cut(s)	1713
BspPI	GGATC	5 cut(s)	1174, 1568, 1581, 1853, 1866
BspT107I	GGYRCC	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	1722
BsrGI	TGTACA	1 cut(s)	1408
BsrI	ACTGG	2 cut(s)	963, 1005
BssECI	CCNNGG	2 cut(s)	434, 1782
BssT1I	CCWWGG	1 cut(s)	1782
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	917, 1756
Bst6I	CTCTTC	5 cut(s)	54, 89, 162, 179, 1267
BstAUI	TGTACA	1 cut(s)	1408
BstC8I	GCNNGC	6 cut(s)	156, 213, 466, 903, 1183, 1711
BstDSI	CCRYGG	1 cut(s)	434
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	1285
BstMAI	GTCTC	2 cut(s)	1184, 1722
BstMWI	GCNNNNNNNGC	1 cut(s)	1601
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	2 cut(s)	1555, 1800
BstPAI	GACNNNNGTC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	727
BstV1I	GCAGC	2 cut(s)	1183, 1186
BstV2I	GAAGAC	2 cut(s)	335, 386
BstX2I	RGATCY	7 cut(s)	115, 632, 931, 1166, 1573, 1839, 1858
BstYI	RGATCY	7 cut(s)	115, 632, 931, 1166, 1573, 1839, 1858
BsuRI	GGCC	1 cut(s)	1787
BtgI	CCRYGG	1 cut(s)	434
BtgZI	GCGATG	3 cut(s)	173, 593, 792
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	4 cut(s)	619, 760, 1012, 1719
Cac8I	GCNNGC	6 cut(s)	156, 213, 466, 903, 1183, 1711
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	2 cut(s)	601, 919
CfoI	GCGC	1 cut(s)	1285
Cfr13I	GGNCC	1 cut(s)	1328
Csp6I	GTAC	3 cut(s)	579, 618, 1409
CviAII	CATG	8 cut(s)	529, 602, 920, 1079, 1552, 1588, 1775, 1797
CviQI	GTAC	3 cut(s)	579, 618, 1409
DraI	TTTAAA	1 cut(s)	897
DraIII	CACNNNGTG	1 cut(s)	1533
Eam1104I	CTCTTC	5 cut(s)	54, 89, 162, 179, 1267
EarI	CTCTTC	5 cut(s)	54, 89, 162, 179, 1267
Eco130I	CCWWGG	1 cut(s)	1782
Eco24I	GRGCYC	1 cut(s)	1359
Eco31I	GGTCTC	1 cut(s)	1722
Eco47I	GGWCC	1 cut(s)	1328
Eco57I	CTGAAG	1 cut(s)	1049
Eco88I	CYCGRG	1 cut(s)	1665
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoRI	GAATTC	2 cut(s)	680, 1291
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	1782
EcoT22I	ATGCAT	2 cut(s)	1062, 1137
EcoT38I	GRGCYC	1 cut(s)	1359
ErhI	CCWWGG	1 cut(s)	1782
FaeI	CATG	8 cut(s)	532, 605, 923, 1082, 1555, 1591, 1778, 1800
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	8 cut(s)	528, 601, 919, 1078, 1551, 1587, 1774, 1796
FbaI	TGATCA	2 cut(s)	922, 1081
Fnu4HI	GCNGC	2 cut(s)	1197, 1200
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	1359
Fsp4HI	GCNGC	2 cut(s)	1197, 1200
FspBI	CTAG	4 cut(s)	27, 1446, 1692, 1710
GlaI	GCGC	1 cut(s)	1284
GluI	GCNGC	2 cut(s)	1197, 1200
HaeIII	GGCC	1 cut(s)	1787
HhaI	GCGC	1 cut(s)	1285
Hin1II	CATG	8 cut(s)	532, 605, 923, 1082, 1555, 1591, 1778, 1800
Hin6I	GCGC	1 cut(s)	1283
HinP1I	GCGC	1 cut(s)	1283
HindIII	AAGCTT	3 cut(s)	152, 889, 1390
HinfI	GANTC	7 cut(s)	452, 697, 826, 860, 1010, 1451, 1813
HphI	GGTGA	1 cut(s)	1397
Hpy166II	GTNNAC	4 cut(s)	497, 581, 1411, 1480
Hpy8I	GTNNAC	4 cut(s)	497, 581, 1411, 1480
HpyAV	CCTTC	2 cut(s)	137, 1376
HpyCH4III	ACNGT	2 cut(s)	917, 1756
HpyCH4IV	ACGT	2 cut(s)	383, 654
HpyCH4V	TGCA	7 cut(s)	705, 849, 1046, 1060, 1135, 1562, 1587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1601
HpySE526I	ACGT	2 cut(s)	383, 654
Hsp92II	CATG	8 cut(s)	532, 605, 923, 1082, 1555, 1591, 1778, 1800
HspAI	GCGC	1 cut(s)	1283
KpnI	GGTACC	1 cut(s)	621
Ksp22I	TGATCA	2 cut(s)	922, 1081
LmnI	GCTCC	4 cut(s)	543, 721, 1661, 1771
Lsp1109I	GCAGC	2 cut(s)	1183, 1186
LweI	GCATC	5 cut(s)	616, 1069, 1144, 1429, 1675
MaeI	CTAG	4 cut(s)	27, 1446, 1692, 1710
MaeII	ACGT	2 cut(s)	383, 654
MaeIII	GTNAC	8 cut(s)	592, 650, 770, 787, 1000, 1007, 1225, 1817
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	7 cut(s)	115, 632, 931, 1166, 1573, 1839, 1858
MhlI	GDGCHC	2 cut(s)	1359, 1606
MluCI	AATT	9 cut(s)	201, 374, 680, 792, 940, 953, 1291, 1660, 1703
MlyI	GAGTC	4 cut(s)	706, 1004, 1460, 1807
MmeI	TCCRAC	5 cut(s)	63, 294, 378, 499, 1746
Mph1103I	ATGCAT	2 cut(s)	1062, 1137
MseI	TTAA	5 cut(s)	126, 255, 443, 896, 1256
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	676
MspR9I	CCNGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	3 cut(s)	1062, 1137, 1183
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	1 cut(s)	1601
NheI	GCTAGC	1 cut(s)	1709
NlaIII	CATG	8 cut(s)	532, 605, 923, 1082, 1555, 1591, 1778, 1800
NlaIV	GGNNCC	4 cut(s)	619, 717, 1575, 1860
NmuCI	GTSAC	3 cut(s)	770, 1000, 1007
NsiI	ATGCAT	2 cut(s)	1062, 1137
NspI	RCATGY	2 cut(s)	1555, 1800
PaeR7I	CTCGAG	1 cut(s)	1665
PagI	TCATGA	2 cut(s)	601, 919
PciI	ACATGT	1 cut(s)	1796
PctI	GAATGC	3 cut(s)	1062, 1137, 1183
PfeI	GAWTC	3 cut(s)	452, 826, 860
PflMI	CCANNNNNTGG	1 cut(s)	734
PkrI	GCNGC	2 cut(s)	1198, 1201
PleI	GAGTC	4 cut(s)	705, 1004, 1459, 1807
PpsI	GAGTC	4 cut(s)	705, 1004, 1459, 1807
PscI	ACATGT	1 cut(s)	1796
PshAI	GACNNNNGTC	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	4 cut(s)	619, 717, 1575, 1860
PspPI	GGNCC	1 cut(s)	1328
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	7 cut(s)	115, 632, 931, 1166, 1573, 1839, 1858
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	580, 619, 1410
RsaNI	GTAC	3 cut(s)	579, 618, 1409
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	5 cut(s)	126, 255, 443, 896, 1256
SatI	GCNGC	2 cut(s)	1197, 1200
Sau96I	GGNCC	1 cut(s)	1328
SchI	GAGTC	4 cut(s)	706, 1004, 1460, 1807
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	2 cut(s)	1359, 1606
SfaNI	GCATC	5 cut(s)	616, 1069, 1144, 1429, 1675
Sfr274I	CTCGAG	1 cut(s)	1665
SinI	GGWCC	1 cut(s)	1328
SlaI	CTCGAG	1 cut(s)	1665
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	4 cut(s)	119, 299, 500, 1665
SmoI	CTYRAG	4 cut(s)	119, 299, 500, 1665
Sse9I	AATT	9 cut(s)	201, 374, 680, 792, 940, 953, 1291, 1660, 1703
SsiI	CCGC	1 cut(s)	1121
SspI	AATATT	1 cut(s)	1033
SspMI	CTAG	4 cut(s)	27, 1446, 1692, 1710
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	1 cut(s)	1782
TaaI	ACNGT	2 cut(s)	917, 1756
TaiI	ACGT	2 cut(s)	386, 657
TaqI	TCGA	4 cut(s)	661, 936, 1324, 1666
TasI	AATT	9 cut(s)	201, 374, 680, 792, 940, 953, 1291, 1660, 1703
TatI	WGTACW	2 cut(s)	578, 1408
TfiI	GAWTC	3 cut(s)	452, 826, 860
Tru1I	TTAA	5 cut(s)	126, 255, 443, 896, 1256
Tru9I	TTAA	5 cut(s)	126, 255, 443, 896, 1256
TscAI	CASTG	4 cut(s)	619, 760, 1012, 1726
TseFI	GTSAC	3 cut(s)	770, 1000, 1007
TseI	GCWGC	2 cut(s)	1196, 1199
Tsp45I	GTSAC	3 cut(s)	770, 1000, 1007
TspDTI	ATGAA	6 cut(s)	126, 213, 501, 590, 798, 1604
TspGWI	ACGGA	3 cut(s)	251, 423, 445
TspRI	CASTG	4 cut(s)	619, 760, 1012, 1726
Van91I	CCANNNNNTGG	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	1328
XagI	CCTNNNNNAGG	1 cut(s)	726
XapI	RAATTY	2 cut(s)	680, 1291
XceI	RCATGY	2 cut(s)	1555, 1800
XhoI	CTCGAG	1 cut(s)	1665
XspI	CTAG	4 cut(s)	27, 1446, 1692, 1710
Zsp2I	ATGCAT	2 cut(s)	1062, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.