Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004464

Physical Location & Seq

Genomic Coordinates Reverse (-)

66366339 .. 66367563

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG442200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGAAGAGACTAGGACATTGAAGAGAGGACGTGATGATGGGACGGAGGAGTTAATAGTTGATTTTAATGAGGATGACTTGGAGGAAGATGGGGTCTTTCAGCTTATGCTTGAGAACAAGGTGTTGGAGTGTGAGAAGAAGACTGCTGAAAGTGAGGTTGGGGCTTGGAAGCAGAAGTTCAAAGAATTGAAGACGTGGGTCTTGAAGTTGGACCAGGATTTAGTGTTGAAAGGTGGGGAGTTTCCGTGGAAGCTAACTGGGGATTCTGTTGAGGCTGAGGCTTGGAAGCAAAAGTGCAAAGAATTGGAATCATTGGTATTAAAGTTGGAGTGTGAGAAGAAGAATGCTGAAGCTGAGGCTGAGGCTTGGAAGCAAAAGTTGGAGTGTGAGGAGAAGAATGCTGAAGCTGAGGCTGAGGCTTGGAAGCAAAAGTTCAAAGAATTGGAATCATGGGTATTGAAGTTGGAGTGTGAGAAGAAGAATGCTGAAACTGAGGTTGAGGCTTGGAACCAAAAGTTCAAAGAACTGGAATCATGGGTATTGAAGTTGGAGTGTGAGAAGAAGAATGCTGAAACTGAGGTTGAGGCTTGGAAGCAAAAGTTCAAAGAACAGGAATCATGGGTATTGAAGTTGGAGTGTGAGAAGAAGAATGCTGAAGCTGAGGTTGAGGCTTGGAAGAAAAAGTTCAAAGAACTGGAATCATGGGTACTGAAGTTGGACAAGGATAAAGTCTTGAAAGGTGGGGAGTTTCCTTTGAAGTTAACTGGGGATTCTGTTGAAGCGAGCAGCAGAACACAAACAAGTGCAAGGATCGAACCTGAGGAGGGTTTGAAGGTTGGAGTTGGCATGGAAAGTTCAAGGAGCAAAGAAGTGGCTGTGAATGTTATCGATATTAGCACTATATATTACTCCCCTGGTAAAGGAATCTGCCATCTGCAAGCAGCAGGGAGGCTTTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

37.01

Weight (kDa)

4.94

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220 AT5G53220
fragaria_vesca	FvH4_7g31000 FvH4_7g31000 FvH4_7g31000 FvH4_7g31000
malus_domestica	MD01G1215100.v1.1 MD07G1284800.v1.1
prunus_persica	Prupe.2G307000_v2.0.a1
pyrus_communis	pycom01g22580 pycom07g25860
rosa_chinensis	RchiOBHm_Chr1g0380081
rosa_laevigata	RLG00000026334
rosa_multiflora	Rmu_co8295257.1_g000001 Rmu_sc0001232.1_g000006 Rmu_sc0004184.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279730
rosa_rugosa	Rorug01G0417300
rosa_samantha	Rh1AG441800 Rh1AG441900 Rh1AG442000 Rh1AG442100 Rh1AG442200 Rh1BG397400 Rh1CG410800 Rh1DG428200
rosa_wichuraiana	Rw1G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	821
AcuI	CTGAAG	4 cut(s)	372, 426, 678, 734
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	2 cut(s)	827, 923
AjiI	CACGTC	2 cut(s)	35, 198
AjnI	CCWGG	2 cut(s)	216, 916
AjuI	GAANNNNNNNTTGG	6 cut(s)	110, 142, 144, 176, 365, 397
AluBI	AGCT	5 cut(s)	106, 256, 356, 410, 662
AluI	AGCT	5 cut(s)	106, 256, 356, 410, 662
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	821
ApeKI	GCWGC	2 cut(s)	789, 944
Asp700I	GAANNNNTTC	1 cut(s)	686
AspS9I	GGNCC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	214
AxyI	CCTNAGG	1 cut(s)	822
BaeI	ACNNNNGTAYC	2 cut(s)	701, 734
BbsI	GAAGAC	2 cut(s)	149, 200
BbvCI	CCTCAGC	6 cut(s)	279, 357, 363, 411, 417, 663
BbvI	GCAGC	2 cut(s)	801, 956
BccI	CCATC	3 cut(s)	35, 86, 942
BciT130I	CCWGG	2 cut(s)	218, 918
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	790, 945
BlsI	GCNGC	2 cut(s)	791, 946
Bme1390I	CCNGG	2 cut(s)	218, 918
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	2 cut(s)	35, 198
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	218, 918
BmrI	ACTGGG	2 cut(s)	270, 777
BmuI	ACTGGG	2 cut(s)	270, 777
BoxI	GACNNNNGTC	1 cut(s)	200
BpiI	GAAGAC	2 cut(s)	149, 200
Bpu10I	CCTNAGC	6 cut(s)	279, 357, 363, 411, 417, 663
BpuEI	CTTGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	891
BsaJI	CCNNGG	2 cut(s)	248, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 923
Bse1I	ACTGG	4 cut(s)	265, 534, 702, 772
Bse21I	CCTNAGG	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	218, 918
BseCI	ATCGAT	1 cut(s)	891
BseDI	CCNNGG	2 cut(s)	248, 916
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	827, 923
BseMII	CTCAG	9 cut(s)	270, 348, 354, 402, 408, 486, 570, 654, 813
BseNI	ACTGG	4 cut(s)	265, 534, 702, 772
BseRI	GAGGAG	3 cut(s)	65, 407, 839
BseXI	GCAGC	2 cut(s)	801, 956
BshVI	ATCGAT	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	827, 923
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	5 cut(s)	352, 406, 490, 574, 658
Bsp143I	GATC	1 cut(s)	813
BspCNI	CTCAG	9 cut(s)	271, 349, 355, 403, 409, 487, 571, 655, 814
BspDI	ATCGAT	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	821
BsrI	ACTGG	4 cut(s)	265, 534, 702, 772
BssECI	CCNNGG	2 cut(s)	248, 916
BssMI	GATC	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	218, 918
Bst6I	CTCTTC	2 cut(s)	3, 20
BstC8I	GCNNGC	2 cut(s)	787, 942
BstDEI	CTNAG	9 cut(s)	279, 357, 363, 411, 417, 495, 579, 663, 822
BstDSI	CCRYGG	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	921
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	816
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	813
BstNI	CCWGG	2 cut(s)	218, 918
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	216, 916
BstV1I	GCAGC	2 cut(s)	801, 956
BstV2I	GAAGAC	2 cut(s)	149, 200
Bsu15I	ATCGAT	1 cut(s)	891
Bsu36I	CCTNAGG	1 cut(s)	822
BsuTUI	ATCGAT	1 cut(s)	891
BtgI	CCRYGG	1 cut(s)	248
BtrI	CACGTC	2 cut(s)	35, 198
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	787, 942
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	891
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	5 cut(s)	453, 537, 621, 705, 850
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	9 cut(s)	279, 357, 363, 411, 417, 495, 579, 663, 822
DpnI	GATC	1 cut(s)	815
DpnII	GATC	1 cut(s)	813
Eam1104I	CTCTTC	2 cut(s)	3, 20
EarI	CTCTTC	2 cut(s)	3, 20
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	4 cut(s)	372, 426, 678, 734
Eco81I	CCTNAGG	1 cut(s)	822
EcoNI	CCTNNNNNAGG	1 cut(s)	921
EcoRII	CCWGG	2 cut(s)	216, 916
FaeI	CATG	5 cut(s)	456, 540, 624, 708, 853
FaiI	YATR	8 cut(s)	110, 454, 538, 622, 706, 851, 905, 907
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	5 cut(s)	452, 536, 620, 704, 849
Fnu4HI	GCNGC	2 cut(s)	790, 945
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	790, 945
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	790, 945
Hin1II	CATG	5 cut(s)	456, 540, 624, 708, 853
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HinfI	GANTC	8 cut(s)	266, 311, 449, 533, 617, 701, 773, 927
HpaI	GTTAAC	1 cut(s)	765
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188III	TCNNGA	2 cut(s)	205, 736
Hpy8I	GTNNAC	1 cut(s)	765
HpyAV	CCTTC	1 cut(s)	829
HpyCH4IV	ACGT	2 cut(s)	34, 197
HpyCH4V	TGCA	3 cut(s)	300, 809, 940
HpyF3I	CTNAG	9 cut(s)	279, 357, 363, 411, 417, 495, 579, 663, 822
HpySE526I	ACGT	2 cut(s)	34, 197
Hsp92II	CATG	5 cut(s)	456, 540, 624, 708, 853
KspAI	GTTAAC	1 cut(s)	765
Kzo9I	GATC	1 cut(s)	813
LmnI	GCTCC	1 cut(s)	864
Lsp1109I	GCAGC	2 cut(s)	801, 956
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	2 cut(s)	34, 197
MalI	GATC	1 cut(s)	815
MboI	GATC	1 cut(s)	813
MluCI	AATT	3 cut(s)	188, 305, 443
MmeI	TCCRAC	9 cut(s)	108, 192, 309, 363, 447, 531, 615, 699, 820
MroXI	GAANNNNTTC	1 cut(s)	686
MseI	TTAA	5 cut(s)	56, 69, 323, 764, 964
MspR9I	CCNGG	2 cut(s)	218, 918
Mva1269I	GAATGC	5 cut(s)	352, 406, 490, 574, 658
MvaI	CCWGG	2 cut(s)	218, 918
NdeII	GATC	1 cut(s)	813
NlaIII	CATG	5 cut(s)	456, 540, 624, 708, 853
NlaIV	GGNNCC	1 cut(s)	512
PctI	GAATGC	5 cut(s)	352, 406, 490, 574, 658
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	8 cut(s)	266, 311, 449, 533, 617, 701, 773, 927
PkrI	GCNGC	2 cut(s)	791, 946
PshAI	GACNNNNGTC	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	216, 916
PspGI	CCWGG	2 cut(s)	216, 916
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
SaqAI	TTAA	5 cut(s)	56, 69, 323, 764, 964
SatI	GCNGC	2 cut(s)	790, 945
Sau3AI	GATC	1 cut(s)	813
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	218, 918
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	188, 305, 443
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	216, 916
TaiI	ACGT	2 cut(s)	37, 200
TaqI	TCGA	2 cut(s)	816, 891
TasI	AATT	3 cut(s)	188, 305, 443
TfiI	GAWTC	8 cut(s)	266, 311, 449, 533, 617, 701, 773, 927
Tru1I	TTAA	5 cut(s)	56, 69, 323, 764, 964
Tru9I	TTAA	5 cut(s)	56, 69, 323, 764, 964
TseI	GCWGC	2 cut(s)	789, 944
TspGWI	ACGGA	2 cut(s)	62, 237
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	921
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.