Prupe.2G307300_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015416
Physical Location & Seq
Forward (+)
29207315 .. 29209976
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G307300.1

Sequence Viewer

Length: 1167 bp
ATGGCCATGGATGATCACGACCGTCCATCATCTGATTTTTTCCAAGAACACGAGCAGTGCTACTACAGCGACACCACTTGCAACTTAGCTACTCCAGGGGACGATCTTTTTAGCATATTGGAGAGCTTAGACGATGGGTTTGGATTCGGAGGAGCCATGGAATTCCCTCCGCCGCCAGCCACGGTGGCATTGGATGATGAACAACCACCGCGACCGCTTGTTTTCAGCTCATCCTCAGCTGACCAGACCGAGCTTGACGAAACCAATTCGACCCCAAAAACCAAGAGATTGAAGCTCTCTGCATCACCTGCTTCGGGCGGCACCGCGACCACTTTCTCAGATGAAGATGGACAACAAACAAGGATGTCTCATATAACGGTGGAGCGCAACCGCAGAAAGCAAATGAACGACCACTTGTCTGTCCTGCGCTCTCTCATGCCTTGCTTCTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGGGTGGTTGATTACATCAATGAACTGCAGCAAGTTCTTCAATCGCTTGAGGCCAAGAAGCAGCGAAAAGCCTACAGTGAAGTGTTAAGCAGCCCTATGCTGGCCTCAAGTCCAAGACCACCTGGTCCATCACCACCAATCCTTAGCCCTAGAAAACCCCCTCTCAGTCCTAGGCTTAGCTTGCCCCCTATCAGCCCAAGAACCCCTCAGCCAACCAGCCCTTACAAGCCCTCTTCTGCGAGGGCTCTGCAGCAACCACCACCACCACAATTACCTGCCGCTGCTAATATTATTTGTAATTATCTGATTTCTAGTCCAAACATGCCCACCTCATCGTCATTTGAATTACCATCTCCTTCTTCTTCAACTACTTCCTCCCATATCAATAATAATAATAATATTGACAATCTCAATGAGCTCTTCGCCAACTCCAAGTCCGCCGTCGCCCAAGTGGAAGTGAAATTTTCAGGTCCAAATGTTCTTCTCAAAACGGTGTCACCTCCGATACCGGGACAGGCTCTCAGAATCATTTCTACTCTCGAAGAACTCTCGCTTGAAATTCTTGACGTCAGTATCACCACCGTTGACGAAACCATGATTAATGCCTTCACCATCAAGATCGGAATTGAATGCCAACTTAGTGCCGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA

Protein Analysis

389

Amino Acids

42.19

Weight (kDa)

4.96

Isoelectric Point (pI)

70.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53210 AT5G53210
fragaria_vesca FvH4_7g31020
malus_domestica MD01G1215200.v1.1 MD07G1285100.v1.1
prunus_persica Prupe.2G307300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380101
rosa_laevigata RLG00000026332
rosa_multiflora Rmu_sc0001232.1_g000008
rosa_roxburghii Rroxscaffold_4G00279700
rosa_rugosa Rorug01G0417400
rosa_samantha Rh1AG442600 Rh1BG397600 Rh1CG411000 Rh1DG428400
rosa_wichuraiana Rw1G038430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
AasI GACNNNNNNGTC 1 cut(s) 606
AatII GACGTC 1 cut(s) 1053
Acc36I ACCTGC 2 cut(s) 316, 766
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 2 cut(s) 211, 326
AciI CCGC 9 cut(s) 170, 173, 209, 215, 318, 324, 391, 762, 921
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 161, 944, 1041, 1146
AcyI GRCGYC 1 cut(s) 1050
AfiI CCNNNNNNNGG 3 cut(s) 314, 583, 992
AgsI TTSAA 6 cut(s) 292, 524, 827, 849, 1040, 1112
AhdI GACNNNNNGTC 1 cut(s) 415
AjnI CCWGG 2 cut(s) 94, 604
AluBI AGCT 8 cut(s) 89, 126, 228, 239, 253, 295, 663, 901
AluI AGCT 8 cut(s) 89, 126, 228, 239, 253, 295, 663, 901
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 1 cut(s) 372
AoxI GGCC 3 cut(s) 3, 534, 585
ApeKI GCWGC 5 cut(s) 511, 544, 573, 733, 764
ApoI RAATTY 4 cut(s) 161, 944, 1041, 1146
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AseI ATTAAT 1 cut(s) 1083
Asp700I GAANNNNTTC 1 cut(s) 1012
AspA2I CCTAGG 1 cut(s) 653
AspLEI GCGC 2 cut(s) 387, 429
AspS9I GGNCC 2 cut(s) 608, 953
AsuC2I CCSGG 1 cut(s) 993
AsuHPI GGTGA 6 cut(s) 297, 606, 972, 1051, 1084, 1133
AvaII GGWCC 2 cut(s) 608, 953
AvrII CCTAGG 1 cut(s) 653
BaeI ACNNNNGTAYC 2 cut(s) 1039, 1072
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 730, 903
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 903
BbvCI CCTCAGC 2 cut(s) 235, 690
BbvI GCAGC 5 cut(s) 523, 556, 585, 745, 751
BccI CCATC 6 cut(s) 34, 128, 341, 619, 841, 1103
BceAI ACGGC 1 cut(s) 908
BcgI CGANNNNNNTGC 2 cut(s) 712, 746
BciT130I CCWGG 2 cut(s) 96, 606
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 993
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 3 cut(s) 633, 654, 795
BfmI CTRYAG 4 cut(s) 64, 509, 556, 731
BfuAI ACCTGC 2 cut(s) 316, 766
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 8 cut(s) 173, 319, 512, 545, 574, 734, 762, 765
BlnI CCTAGG 1 cut(s) 653
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 8 cut(s) 174, 320, 513, 546, 575, 735, 763, 766
Bme1390I CCNGG 3 cut(s) 96, 606, 993
Bme18I GGWCC 2 cut(s) 608, 953
BmeRI GACNNNNNGTC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 608, 953
BmiI GGNNCC 2 cut(s) 154, 322
BmrFI CCNGG 3 cut(s) 96, 606, 993
BmsI GCATC 2 cut(s) 311, 479
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 3 cut(s) 235, 626, 690
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 551, 574
BpuMI CCSGG 1 cut(s) 993
BsaHI GRCGYC 1 cut(s) 1050
BsaJI CCNNGG 6 cut(s) 6, 95, 156, 180, 653, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 583, 992
Bse1I ACTGG 1 cut(s) 1140
BseBI CCWGG 2 cut(s) 96, 606
BseDI CCNNGG 6 cut(s) 6, 95, 156, 180, 653, 1128
BseGI GGATG 4 cut(s) 16, 199, 230, 369
BseLI CCNNNNNNNGG 3 cut(s) 314, 583, 992
BseMII CTCAG 5 cut(s) 249, 351, 661, 704, 1018
BseNI ACTGG 1 cut(s) 1140
BseRI GAGGAG 2 cut(s) 165, 474
BseXI GCAGC 5 cut(s) 523, 556, 585, 745, 751
Bsh1236I CGCG 2 cut(s) 211, 326
Bsh1285I CGRYCG 2 cut(s) 22, 215
BshFI GGCC 3 cut(s) 5, 536, 587
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 2 cut(s) 22, 215
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 1 cut(s) 992
BslFI GGGAC 2 cut(s) 113, 1008
BslI CCNNNNNNNGG 3 cut(s) 314, 583, 992
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 113, 1008
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 3 cut(s) 5, 536, 587
Bsp1286I GDGCHC 2 cut(s) 730, 903
Bsp143I GATC 4 cut(s) 13, 103, 463, 1101
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp19I CCATGG 2 cut(s) 6, 156
BspACI CCGC 9 cut(s) 170, 173, 209, 215, 318, 324, 391, 762, 921
BspANI GGCC 3 cut(s) 5, 536, 587
BspCNI CTCAG 5 cut(s) 248, 350, 660, 703, 1017
BspFNI CGCG 2 cut(s) 211, 326
BspLI GGNNCC 2 cut(s) 154, 322
BspMAI CTGCAG 2 cut(s) 513, 735
BspMI ACCTGC 2 cut(s) 316, 766
BspQI GCTCTTC 1 cut(s) 908
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 1140
BssECI CCNNGG 6 cut(s) 6, 95, 156, 180, 653, 1128
BssMI GATC 4 cut(s) 13, 103, 463, 1101
BssNI GRCGYC 1 cut(s) 1050
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 3 cut(s) 6, 156, 653
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 96, 606
Bst4CI ACNGT 6 cut(s) 23, 184, 379, 560, 976, 1066
Bst6I CTCTTC 2 cut(s) 721, 908
BstACI GRCGYC 1 cut(s) 1050
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 177, 585, 665
BstDSI CCRYGG 3 cut(s) 6, 156, 180
BstF5I GGATG 4 cut(s) 16, 199, 230, 369
BstFNI CGCG 2 cut(s) 211, 326
BstHHI GCGC 2 cut(s) 387, 429
BstKTI GATC 4 cut(s) 16, 106, 466, 1104
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 4 cut(s) 13, 103, 463, 1101
BstMCI CGRYCG 2 cut(s) 22, 215
BstMWI GCNNNNNNNGC 4 cut(s) 66, 185, 308, 664
BstNI CCWGG 2 cut(s) 96, 606
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 3 cut(s) 94, 604, 991
BstSFI CTRYAG 4 cut(s) 64, 509, 556, 731
BstUI CGCG 2 cut(s) 211, 326
BstV1I GCAGC 5 cut(s) 523, 556, 585, 745, 751
BsuRI GGCC 3 cut(s) 5, 536, 587
BtgI CCRYGG 3 cut(s) 6, 156, 180
BtsCI GGATG 4 cut(s) 16, 199, 230, 369
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 565
BveI ACCTGC 2 cut(s) 316, 766
Cac8I GCNNGC 3 cut(s) 177, 585, 665
CfoI GCGC 2 cut(s) 387, 429
Cfr13I GGNCC 2 cut(s) 608, 953
CsiI ACCWGGT 1 cut(s) 604
CviAII CATG 5 cut(s) 7, 157, 436, 805, 1078
DpnI GATC 4 cut(s) 15, 105, 465, 1103
DpnII GATC 4 cut(s) 13, 103, 463, 1101
DrdI GACNNNNNNGTC 1 cut(s) 606
DriI GACNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 721, 908
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 2 cut(s) 721, 908
EciI GGCGGA 2 cut(s) 159, 910
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 3 cut(s) 6, 156, 653
Eco24I GRGCYC 2 cut(s) 730, 903
Eco47I GGWCC 2 cut(s) 608, 953
Eco53kI GAGCTC 1 cut(s) 901
EcoICRI GAGCTC 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 94, 604
EcoT14I CCWWGG 3 cut(s) 6, 156, 653
EcoT38I GRGCYC 2 cut(s) 730, 903
ErhI CCWWGG 3 cut(s) 6, 156, 653
FaeI CATG 5 cut(s) 10, 160, 439, 808, 1081
FaqI GGGAC 2 cut(s) 113, 1008
FatI CATG 5 cut(s) 6, 156, 435, 804, 1077
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 8 cut(s) 173, 319, 512, 545, 574, 734, 762, 765
FokI GGATG 4 cut(s) 23, 206, 217, 376
FriOI GRGCYC 2 cut(s) 730, 903
Fsp4HI GCNGC 8 cut(s) 173, 319, 512, 545, 574, 734, 762, 765
FspBI CTAG 3 cut(s) 633, 654, 795
GlaI GCGC 2 cut(s) 386, 428
GluI GCNGC 8 cut(s) 173, 319, 512, 545, 574, 734, 762, 765
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 3 cut(s) 5, 536, 587
HapII CCGG 1 cut(s) 992
HhaI GCGC 2 cut(s) 387, 429
Hin1I GRCGYC 1 cut(s) 1050
Hin1II CATG 5 cut(s) 10, 160, 439, 808, 1081
Hin6I GCGC 2 cut(s) 385, 427
HinP1I GCGC 2 cut(s) 385, 427
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 2 cut(s) 144, 1008
HpaII CCGG 1 cut(s) 992
HphI GGTGA 6 cut(s) 297, 606, 972, 1051, 1084, 1133
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 7 cut(s) 34, 149, 340, 789, 987, 1007, 1106
Hpy188III TCNNGA 4 cut(s) 17, 1022, 1046, 1099
Hpy8I GTNNAC 1 cut(s) 1069
Hpy99I CGWCG 1 cut(s) 929
HpyAV CCTTC 2 cut(s) 849, 1099
HpyCH4III ACNGT 6 cut(s) 23, 184, 379, 560, 976, 1066
HpyCH4IV ACGT 1 cut(s) 1050
HpyCH4V TGCA 4 cut(s) 81, 302, 511, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 185, 308, 664
HpySE526I ACGT 1 cut(s) 1050
Hsp92I GRCGYC 1 cut(s) 1050
Hsp92II CATG 5 cut(s) 10, 160, 439, 808, 1081
HspAI GCGC 2 cut(s) 385, 427
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 103, 463, 1101
LguI GCTCTTC 1 cut(s) 908
LmnI GCTCC 2 cut(s) 152, 382
Lsp1109I GCAGC 5 cut(s) 523, 556, 585, 745, 751
LweI GCATC 2 cut(s) 311, 479
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 3 cut(s) 633, 654, 795
MaeII ACGT 1 cut(s) 1050
MaeIII GTNAC 1 cut(s) 978
MalI GATC 4 cut(s) 15, 105, 465, 1103
MboI GATC 4 cut(s) 13, 103, 463, 1101
MboII GAAGA 8 cut(s) 356, 512, 708, 834, 837, 895, 956, 1037
MhlI GDGCHC 2 cut(s) 730, 903
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1012
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 569, 1083
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 239, 764
MspI CCGG 1 cut(s) 992
MspR9I CCNGG 3 cut(s) 96, 606, 993
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 2 cut(s) 96, 606
MvnI CGCG 2 cut(s) 211, 326
MwoI GCNNNNNNNGC 4 cut(s) 66, 185, 308, 664
NciI CCSGG 1 cut(s) 993
NcoI CCATGG 2 cut(s) 6, 156
NdeII GATC 4 cut(s) 13, 103, 463, 1101
NlaIII CATG 5 cut(s) 10, 160, 439, 808, 1081
NlaIV GGNNCC 2 cut(s) 154, 322
NmeAIII GCCGAG 1 cut(s) 1153
NmuCI GTSAC 1 cut(s) 978
NspI RCATGY 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 908
PctI GAATGC 1 cut(s) 1118
PdmI GAANNNNTTC 1 cut(s) 1012
PfeI GAWTC 2 cut(s) 144, 1008
PkrI GCNGC 8 cut(s) 174, 320, 513, 546, 575, 735, 763, 766
PshBI ATTAAT 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 903
Psp6I CCWGG 2 cut(s) 94, 604
PspGI CCWGG 2 cut(s) 94, 604
PspN4I GGNNCC 2 cut(s) 154, 322
PspPI GGNCC 2 cut(s) 608, 953
PstI CTGCAG 2 cut(s) 513, 735
PvuII CAGCTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 908
SaqAI TTAA 2 cut(s) 569, 1083
SatI GCNGC 8 cut(s) 173, 319, 512, 545, 574, 734, 762, 765
Sau3AI GATC 4 cut(s) 13, 103, 463, 1101
Sau96I GGNCC 2 cut(s) 608, 953
ScrFI CCNGG 3 cut(s) 96, 606, 993
SduI GDGCHC 2 cut(s) 730, 903
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 2 cut(s) 311, 479
SfcI CTRYAG 4 cut(s) 64, 509, 556, 731
SinI GGWCC 2 cut(s) 608, 953
SmlI CTYRAG 2 cut(s) 530, 589
SmoI CTYRAG 2 cut(s) 530, 589
SsiI CCGC 9 cut(s) 170, 173, 209, 215, 318, 324, 391, 762, 921
SspI AATATT 2 cut(s) 772, 883
SspMI CTAG 3 cut(s) 633, 654, 795
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 3 cut(s) 94, 604, 991
StyI CCWWGG 3 cut(s) 6, 156, 653
TaaI ACNGT 6 cut(s) 23, 184, 379, 560, 976, 1066
TaiI ACGT 1 cut(s) 1053
TaqI TCGA 2 cut(s) 269, 1023
TaqII GACCGA 1 cut(s) 263
TauI GCSGC 3 cut(s) 175, 321, 764
TfiI GAWTC 2 cut(s) 144, 1008
Tru1I TTAA 2 cut(s) 569, 1083
Tru9I TTAA 2 cut(s) 569, 1083
TscAI CASTG 2 cut(s) 62, 565
TseFI GTSAC 1 cut(s) 978
TseI GCWGC 5 cut(s) 511, 544, 573, 733, 764
Tsp45I GTSAC 1 cut(s) 978
TspDTI ATGAA 4 cut(s) 213, 357, 419, 519
TspRI CASTG 2 cut(s) 62, 565
VpaK11BI GGWCC 2 cut(s) 608, 953
VspI ATTAAT 1 cut(s) 1083
XapI RAATTY 4 cut(s) 161, 944, 1041, 1146
XceI RCATGY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 653
XmnI GAANNNNTTC 1 cut(s) 1012
XspI CTAG 3 cut(s) 633, 654, 795
ZraI GACGTC 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.