Rroxscaffold_4G00279700

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015416
Physical Location & Seq
Reverse (-)
2428387 .. 2430671
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279700.1

Sequence Viewer

Length: 972 bp
ATGGATGATCATCTTTTGTCTGAATTTTTCGAAGAACAAGATCACTGCTACGGTGGCGGCGAGGCTAGCGGCTTGGCTCCCGGTGATGATCTTTTTAGCATATTGGAGAGCTTAGATGCAGGAGCACTCATGGATAGTTTTCCTCCGCCAACACCGTGCGATGAACTCGTGTTTAGCTCATCAAAAGAAGGAGGGATAGAAGTGTCACCGGAGCTCGAAACTTCACCAAAATCATCCAAGAGAGTGAAGCTTTCAAAAGAGGCTTCCCCGGCGGGACAGGGGGATCAAGCATCAATTATTGGAGGGGTGGTTGACTACATCAATGAATTGCAGCAAGTTCTTCAATCACTAGAGGCCAAGAAGCAACGAAAGGCATACAGTGAAGTGTTAAGCCCTAGGCTACCAGTTTCAAGTAGTCCCAGATTACCTTCATCACCACTAGTACTTAGCCCTAGAAAACCCCCATTAAGTCCTTTAGCTAGTCCCAGAATCAGCTGCAGCAGCTTGCCTATTAGTCCAAGAACCCCACAGCCAACCAGCCCTTACAAGCCTCCCAGGACGACGTCGTTACAACAGTTGCAACAACCAGGTTACCTCTCTAGTCCAACCATAACTGCAGCTAGCTCATCACTTGAACCATCTCCTTCAAATTCGTCGACTACTAATTTTTCCTCCGTTAATCATGTTATTGACAATCTCAATGAGCTTTTTGCCAATTCTAAGTCCACCATTGCCCATGTGGAAGTGAAGTTTTCAGGTGCAAATGTTCTTTTAAACACGGTGTCTCCTCGGATACCAGGACAAGCTCTCAAAATCATTTCAGCTCTCGAAGATCTTTCCCTCGAGATTCTCCACGTCGAAATAAAGACGGAAGACGAAAAGATGCTTAATTCCTTCACCATCAAGATTGGAATTGAATGCCAACTTAGTGCTGAGGAACTCGCTCACCAAATTCAGCAAACATTCCGCTAA

Protein Analysis

323

Amino Acids

34.74

Weight (kDa)

5.02

Isoelectric Point (pI)

66.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53210 AT5G53210
fragaria_vesca FvH4_7g31020
malus_domestica MD01G1215200.v1.1 MD07G1285100.v1.1
prunus_persica Prupe.2G307300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0380101
rosa_laevigata RLG00000026332
rosa_multiflora Rmu_sc0001232.1_g000008
rosa_roxburghii Rroxscaffold_4G00279700
rosa_rugosa Rorug01G0417400
rosa_samantha Rh1AG442600 Rh1BG397600 Rh1CG411000 Rh1DG428400
rosa_wichuraiana Rw1G038430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 656
AciI CCGC 5 cut(s) 57, 69, 146, 272, 967
AclWI GGATC 1 cut(s) 291
AcsI RAATTY 3 cut(s) 23, 649, 951
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 1 cut(s) 444
AgsI TTSAA 6 cut(s) 255, 344, 411, 635, 648, 917
AhlI ACTAGT 1 cut(s) 439
AjiI CACGTC 1 cut(s) 856
AjnI CCWGG 3 cut(s) 554, 586, 796
Alw21I GWGCWC 2 cut(s) 127, 216
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 5 cut(s) 331, 495, 498, 501, 617
ApoI RAATTY 3 cut(s) 23, 649, 951
AspA2I CCTAGG 1 cut(s) 395
AsuC2I CCSGG 2 cut(s) 81, 269
AsuHPI GGTGA 6 cut(s) 95, 198, 216, 426, 889, 938
AsuII TTCGAA 1 cut(s) 30
AsuNHI GCTAGC 2 cut(s) 65, 620
AvaI CYCGRG 1 cut(s) 842
AvrII CCTAGG 1 cut(s) 395
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 879
Bbv12I GWGCWC 2 cut(s) 127, 216
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 5 cut(s) 343, 482, 510, 513, 629
BccI CCATC 2 cut(s) 646, 908
BciT130I CCWGG 3 cut(s) 556, 588, 798
BciVI GTATCC 1 cut(s) 786
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 2 cut(s) 81, 269
BcoDI GTCTC 1 cut(s) 789
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 8 cut(s) 66, 350, 396, 440, 453, 480, 600, 621
BfmI CTRYAG 2 cut(s) 496, 615
BfuI GTATCC 1 cut(s) 786
BglII AGATCT 1 cut(s) 832
BisI GCNGC 7 cut(s) 58, 70, 332, 496, 499, 502, 618
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 7 cut(s) 59, 71, 333, 497, 500, 503, 619
BmcAI AGTACT 1 cut(s) 444
Bme1390I CCNGG 5 cut(s) 81, 269, 556, 588, 798
BmeT110I CYCGRG 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 856
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 5 cut(s) 81, 269, 556, 588, 798
BmsI GCATC 3 cut(s) 106, 299, 873
BmtI GCTAGC 2 cut(s) 69, 624
BpiI GAAGAC 1 cut(s) 879
Bpu10I CCTNAGC 1 cut(s) 933
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 81, 269
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 4 cut(s) 267, 395, 554, 788
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 769, 799
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 556, 588, 798
BseDI CCNNGG 4 cut(s) 267, 395, 554, 788
BseGI GGATG 2 cut(s) 10, 233
BseJI GATNNNNATC 1 cut(s) 9
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 924
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 777
BseXI GCAGC 5 cut(s) 343, 482, 510, 513, 629
BshFI GGCC 1 cut(s) 356
BsiHKAI GWGCWC 2 cut(s) 127, 216
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 3 cut(s) 81, 209, 269
BslFI GGGAC 3 cut(s) 288, 402, 468
BsmAI GTCTC 1 cut(s) 789
BsmFI GGGAC 3 cut(s) 288, 402, 468
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 127, 216
Bsp143I GATC 5 cut(s) 7, 40, 88, 283, 832
BspACI CCGC 5 cut(s) 57, 69, 146, 272, 967
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 925
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 2 cut(s) 500, 619
BspOI GCTAGC 2 cut(s) 69, 624
BspPI GGATC 1 cut(s) 291
BspT104I TTCGAA 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 4 cut(s) 267, 395, 554, 788
BssMI GATC 5 cut(s) 7, 40, 88, 283, 832
BssNI GRCGYC 1 cut(s) 563
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 395
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 556, 588, 798
Bst4CI ACNGT 5 cut(s) 53, 156, 380, 576, 781
BstACI GRCGYC 1 cut(s) 563
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 67, 506, 622
BstDEI CTNAG 5 cut(s) 112, 446, 720, 926, 933
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 2 cut(s) 10, 233
BstKTI GATC 5 cut(s) 10, 43, 91, 286, 835
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 5 cut(s) 7, 40, 88, 283, 832
BstMWI GCNNNNNNNGC 4 cut(s) 54, 66, 269, 501
BstNI CCWGG 3 cut(s) 556, 588, 798
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 5 cut(s) 79, 267, 554, 586, 796
BstSFI CTRYAG 2 cut(s) 496, 615
BstV1I GCAGC 5 cut(s) 343, 482, 510, 513, 629
BstV2I GAAGAC 1 cut(s) 879
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
BsuI GTATCC 1 cut(s) 786
BsuRI GGCC 1 cut(s) 356
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 2 cut(s) 10, 233
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 385
Cac8I GCNNGC 3 cut(s) 67, 506, 622
CsiI ACCWGGT 1 cut(s) 586
Csp6I GTAC 1 cut(s) 443
CviAII CATG 3 cut(s) 130, 683, 737
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 5 cut(s) 112, 446, 720, 926, 933
DpnI GATC 5 cut(s) 9, 42, 90, 285, 834
DpnII GATC 5 cut(s) 7, 40, 88, 283, 832
DraI TTTAAA 1 cut(s) 774
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 842
Eco91I GGTNACC 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 554, 586, 796
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 3 cut(s) 133, 686, 740
FaiI YATR 6 cut(s) 101, 131, 376, 611, 684, 738
FaqI GGGAC 3 cut(s) 288, 402, 468
FatI CATG 3 cut(s) 129, 682, 736
FauI CCCGC 1 cut(s) 265
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 7 cut(s) 58, 70, 332, 496, 499, 502, 618
FokI GGATG 2 cut(s) 17, 220
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 7 cut(s) 58, 70, 332, 496, 499, 502, 618
FspBI CTAG 8 cut(s) 66, 350, 396, 440, 453, 480, 600, 621
GluI GCNGC 7 cut(s) 58, 70, 332, 496, 499, 502, 618
HaeIII GGCC 1 cut(s) 356
HapII CCGG 3 cut(s) 81, 209, 269
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 3 cut(s) 133, 686, 740
HincII GTYRAC 2 cut(s) 313, 657
HindII GTYRAC 2 cut(s) 313, 657
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 489, 847
HpaII CCGG 3 cut(s) 81, 209, 269
HphI GGTGA 6 cut(s) 95, 198, 216, 426, 889, 938
Hpy166II GTNNAC 3 cut(s) 313, 657, 726
Hpy188I TCNGA 2 cut(s) 22, 792
Hpy188III TCNNGA 3 cut(s) 827, 844, 904
Hpy8I GTNNAC 3 cut(s) 313, 657, 726
Hpy99I CGWCG 4 cut(s) 565, 568, 658, 860
HpyAV CCTTC 4 cut(s) 182, 438, 654, 904
HpyCH4III ACNGT 5 cut(s) 53, 156, 380, 576, 781
HpyCH4IV ACGT 2 cut(s) 563, 855
HpyCH4V TGCA 6 cut(s) 119, 331, 498, 580, 617, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 66, 269, 501
HpyF3I CTNAG 5 cut(s) 112, 446, 720, 926, 933
HpySE526I ACGT 2 cut(s) 563, 855
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 3 cut(s) 133, 686, 740
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 40, 88, 283, 832
LmnI GCTCC 3 cut(s) 82, 122, 211
Lsp1109I GCAGC 5 cut(s) 343, 482, 510, 513, 629
LweI GCATC 3 cut(s) 106, 299, 873
MabI ACCWGGT 1 cut(s) 586
MaeI CTAG 8 cut(s) 66, 350, 396, 440, 453, 480, 600, 621
MaeII ACGT 2 cut(s) 563, 855
MaeIII GTNAC 3 cut(s) 204, 567, 590
MalI GATC 5 cut(s) 9, 42, 90, 285, 834
MboI GATC 5 cut(s) 7, 40, 88, 283, 832
MboII GAAGA 4 cut(s) 44, 332, 842, 884
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 2 cut(s) 127, 216
MluCI AATT 9 cut(s) 23, 294, 326, 649, 664, 715, 889, 912, 951
MmeI TCCRAC 1 cut(s) 629
MseI TTAA 5 cut(s) 389, 467, 678, 773, 888
MspA1I CMGCKG 1 cut(s) 495
MspI CCGG 3 cut(s) 81, 209, 269
MspR9I CCNGG 5 cut(s) 81, 269, 556, 588, 798
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 3 cut(s) 556, 588, 798
MwoI GCNNNNNNNGC 4 cut(s) 54, 66, 269, 501
NciI CCSGG 2 cut(s) 81, 269
NdeII GATC 5 cut(s) 7, 40, 88, 283, 832
NheI GCTAGC 2 cut(s) 65, 620
NlaIII CATG 3 cut(s) 133, 686, 740
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 204
NspV TTCGAA 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 923
PfeI GAWTC 2 cut(s) 489, 847
PflFI GACNNNGTC 1 cut(s) 562
PkrI GCNGC 7 cut(s) 59, 71, 333, 497, 500, 503, 619
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 554, 586, 796
PspEI GGTNACC 1 cut(s) 590
PspGI CCWGG 3 cut(s) 554, 586, 796
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 2 cut(s) 500, 619
PsuI RGATCY 1 cut(s) 832
PsyI GACNNNGTC 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 495
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 655
SaqAI TTAA 5 cut(s) 389, 467, 678, 773, 888
SatI GCNGC 7 cut(s) 58, 70, 332, 496, 499, 502, 618
Sau3AI GATC 5 cut(s) 7, 40, 88, 283, 832
ScaI AGTACT 1 cut(s) 444
ScrFI CCNGG 5 cut(s) 81, 269, 556, 588, 798
SduI GDGCHC 2 cut(s) 127, 216
SexAI ACCWGGT 1 cut(s) 586
SfaNI GCATC 3 cut(s) 106, 299, 873
SfcI CTRYAG 2 cut(s) 496, 615
Sfr274I CTCGAG 1 cut(s) 842
SfuI TTCGAA 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 9 cut(s) 23, 294, 326, 649, 664, 715, 889, 912, 951
SsiI CCGC 5 cut(s) 57, 69, 146, 272, 967
SspMI CTAG 8 cut(s) 66, 350, 396, 440, 453, 480, 600, 621
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 5 cut(s) 79, 267, 554, 586, 796
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 5 cut(s) 53, 156, 380, 576, 781
TaiI ACGT 2 cut(s) 566, 858
TaqI TCGA 6 cut(s) 30, 216, 656, 828, 843, 858
TasI AATT 9 cut(s) 23, 294, 326, 649, 664, 715, 889, 912, 951
TatI WGTACW 1 cut(s) 442
TauI GCSGC 2 cut(s) 60, 72
TfiI GAWTC 2 cut(s) 489, 847
Tru1I TTAA 5 cut(s) 389, 467, 678, 773, 888
Tru9I TTAA 5 cut(s) 389, 467, 678, 773, 888
TscAI CASTG 2 cut(s) 50, 385
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 5 cut(s) 331, 495, 498, 501, 617
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 177, 339, 420
TspGWI ACGGA 2 cut(s) 664, 884
TspRI CASTG 2 cut(s) 50, 385
Tth111I GACNNNGTC 1 cut(s) 562
XapI RAATTY 3 cut(s) 23, 649, 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XhoI CTCGAG 1 cut(s) 842
XmaJI CCTAGG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 656
XspI CTAG 8 cut(s) 66, 350, 396, 440, 453, 480, 600, 621
ZraI GACGTC 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.