Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Forward (+)

21634424 .. 21636355

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAACCGGTTGAAGGAGCAAAAGGGGCCGAAGTTCGACGGCGAAGAATCACCTCCACCTGATTTTGATGAAGATCGAAGTGTGGGTGAGGTAGACGGAGGAGATCACACGCCATTCGCTGGAGGTAAAGTCAGAAGGAAAGCGTCTCGCTATAGAGAGCATCGTGGTGACTATCTTCACGTTTCTTCTCGTCCTGGATTGATGCGAATTCTGGAGAAACAAGGTGATACATCGATTCTTTTTGCTGATAAAGTTTTGAAGTTCACCGGCTCGGGGAAGATGAAACGGCGTATTTTTATCCTCACTGATTTTGCGATCTATCTAATTGATCCCGAGACTGAAGCTATGACCAGGAGAATTGCTTTGTCATCAGTAGAGAAGATGTGTTTAAGCAAATTGAGTGATAACTTCTTCGCTATCATTATTCCCACGGAATATGATCTCTTCATGGCCAGCACTAGGAAGACTGAGCTTGTTCAGGTCATGGTAGATGTCACTAAAAGTGCTTCTGACTATGAACTTGAAGTGCTTCTCTCTAACAGATTTGAGTACAATGCATCTGCCTCATTAGTAAAGGAAGTTTCTTTTGAGGAATCTGAAGGGGGTATCAAGACCAAATTTGTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

210

Amino Acids

23.88

Weight (kDa)

6.36

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	45 - 177	7.1e-29	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	207, 617
AcuI	CTGAAG	2 cut(s)	360, 618
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	4 cut(s)	13, 119, 273, 459
AgeI	ACCGGT	1 cut(s)	6
AgsI	TTSAA	3 cut(s)	13, 259, 524
AjnI	CCWGG	2 cut(s)	193, 350
AluBI	AGCT	2 cut(s)	344, 472
AluI	AGCT	2 cut(s)	344, 472
Alw26I	GTCTC	2 cut(s)	150, 329
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	2 cut(s)	271, 332
AoxI	GGCC	2 cut(s)	26, 450
ApoI	RAATTY	2 cut(s)	207, 617
AsiGI	ACCGGT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	5 cut(s)	42, 98, 179, 236, 256
AvaI	CYCGRG	2 cut(s)	271, 332
BalI	TGGCCA	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	470
BceAI	ACGGC	2 cut(s)	55, 302
BciT130I	CCWGG	2 cut(s)	195, 352
BcoDI	GTCTC	2 cut(s)	150, 329
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	195, 352
BmeT110I	CYCGRG	2 cut(s)	271, 332
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	195, 352
BmsI	GCATC	3 cut(s)	169, 192, 566
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	2 cut(s)	141, 233
Bsa29I	ATCGAT	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 119, 273, 459
Bse118I	RCCGGY	2 cut(s)	6, 266
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	195, 352
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	4 cut(s)	13, 119, 273, 459
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	28, 452
BshTI	ACCGGT	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	233
BsiHKCI	CYCGRG	2 cut(s)	271, 332
BsiSI	CCGG	2 cut(s)	7, 267
BslI	CCNNNNNNNGG	4 cut(s)	13, 119, 273, 459
BsmAI	GTCTC	2 cut(s)	150, 329
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	28, 452
BsoBI	CYCGRG	2 cut(s)	271, 332
Bsp143I	GATC	5 cut(s)	73, 103, 315, 328, 439
BspANI	GGCC	2 cut(s)	28, 452
BspCNI	CTCAG	1 cut(s)	460
BspDI	ATCGAT	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	323
BsrFI	RCCGGY	2 cut(s)	6, 266
BssAI	RCCGGY	2 cut(s)	6, 266
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	5 cut(s)	73, 103, 315, 328, 439
Bst2UI	CCWGG	2 cut(s)	195, 352
Bst6I	CTCTTC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	429
BstKTI	GATC	5 cut(s)	76, 106, 318, 331, 442
BstMAI	GTCTC	2 cut(s)	150, 329
BstMBI	GATC	5 cut(s)	73, 103, 315, 328, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	195, 352
BstSCI	CCNGG	2 cut(s)	193, 350
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	470
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	28, 452
BsuTUI	ATCGAT	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	454
Cfr10I	RCCGGY	2 cut(s)	6, 266
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	233
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	550
CspAI	ACCGGT	1 cut(s)	6
CviAII	CATG	2 cut(s)	448, 484
CviJI	RGCY	5 cut(s)	28, 270, 344, 452, 472
CviKI_1	RGCY	5 cut(s)	28, 270, 344, 452, 472
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	5 cut(s)	75, 105, 317, 330, 441
DpnII	GATC	5 cut(s)	73, 103, 315, 328, 439
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	360, 618
Eco88I	CYCGRG	2 cut(s)	271, 332
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	193, 350
EcoT22I	ATGCAT	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	451, 487
FaiI	YATR	6 cut(s)	153, 347, 438, 449, 485, 516
FatI	CATG	2 cut(s)	447, 483
FblI	GTMKAC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	459
GsuI	CTGGAG	2 cut(s)	141, 233
HaeIII	GGCC	2 cut(s)	28, 452
HapII	CCGG	2 cut(s)	7, 267
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	451, 487
HinfI	GANTC	3 cut(s)	47, 235, 593
HpaII	CCGG	2 cut(s)	7, 267
HphI	GGTGA	5 cut(s)	42, 98, 179, 236, 256
Hpy166II	GTNNAC	2 cut(s)	94, 264
Hpy188I	TCNGA	3 cut(s)	134, 511, 598
Hpy188III	TCNNGA	3 cut(s)	212, 332, 610
Hpy8I	GTNNAC	2 cut(s)	94, 264
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	7, 129, 593
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	451, 487
Kzo9I	GATC	5 cut(s)	73, 103, 315, 328, 439
LmnI	GCTCC	1 cut(s)	16
LweI	GCATC	3 cut(s)	169, 192, 566
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	167, 493
MalI	GATC	5 cut(s)	75, 105, 317, 330, 441
MboI	GATC	5 cut(s)	73, 103, 315, 328, 439
MboII	GAAGA	9 cut(s)	56, 83, 167, 177, 289, 391, 403, 436, 475
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	5 cut(s)	207, 324, 357, 395, 617
MluNI	TGGCCA	1 cut(s)	452
MnlI	CCTC	7 cut(s)	63, 82, 92, 116, 311, 574, 583
Mox20I	TGGCCA	1 cut(s)	452
Mph1103I	ATGCAT	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	2 cut(s)	7, 267
MspR9I	CCNGG	2 cut(s)	195, 352
MvaI	CCWGG	2 cut(s)	195, 352
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	5 cut(s)	73, 103, 315, 328, 439
NlaIII	CATG	2 cut(s)	451, 487
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	167, 493
NsiI	ATGCAT	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	47, 235, 593
PflMI	CCANNNNNTGG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	6
Psp6I	CCWGG	2 cut(s)	193, 350
PspGI	CCWGG	2 cut(s)	193, 350
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	5 cut(s)	73, 103, 315, 328, 439
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	195, 352
SetI	ASST	9 cut(s)	55, 61, 93, 127, 183, 226, 346, 474, 483
SfaNI	GCATC	3 cut(s)	169, 192, 566
SfcI	CTRYAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	5 cut(s)	207, 324, 357, 395, 617
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	193, 350
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	36, 76, 233
TasI	AATT	5 cut(s)	207, 324, 357, 395, 617
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	3 cut(s)	47, 235, 593
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	167, 493
Tsp45I	GTSAC	2 cut(s)	167, 493
TspDTI	ATGAA	5 cut(s)	17, 84, 296, 436, 531
TspGWI	ACGGA	2 cut(s)	111, 446
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	119
XapI	RAATTY	2 cut(s)	207, 617
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.