Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

22403793 .. 22405995

Gene Structure 2203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACAGGTCTAATCTCCAGAGGCGGGTCAAGATGAACGAATCCAAGTACGAGTACGCCGACGAAGACCAAAACGACGACGCACAGGGGACGAGGATGCGGCCGTCGGAGAGCAACGTCACCGAGGATCAGGAGCCGTTTATGGGAGTCAAGGTCCGCCGGAAAGCCTCGTTTCGCCGCGATTTCAAGGGCGACTACATCAACGTCCGGTCCAATCAGTACTTGATGAAAATCCTGGAGAAGCAAGATTGTGCTGCATTGCGTTTTCTAGGTGACAAGGAGGTTTTGTTTGCTGATAAAGTGTTGAAATTCACTAATACTGGGAAGATGAAGCGGCGGATTTTGATGATCACTGATTTTGCTATCTACATTGTTGATCCTGAGGCCGATGCGCTGAAGCGGAGGATAGCGCTTGCGGCTGTGGAGAAGATGTGCTTGAGTGAATTGAGTGATAATTTTTTCGTAGTAGTTATTCCCACGGAGTATGATCTGCTCATGGCTAGTACTCGCAAGACGGAAATCGTTACTGTCTTGGTTGAGGCTACTAAGAGTGCTTCTGATTACGGAGTTGAAGTTTGTTTCGCTAACAGTTTTGAGTATAATGCAGGCGCAGAGTTGGTGAAGGAGGTTCAGTTTGAAGAAGTTGAAGGAGGTGTTAAAACAAGAATTCTGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

227

Amino Acids

26.01

Weight (kDa)

5.85

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	53 - 214	3.7e-33	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AciI	CCGC	8 cut(s)	25, 100, 157, 178, 334, 337, 400, 416
AclWI	GGATC	2 cut(s)	135, 371
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	308, 666
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	4 cut(s)	50, 56, 221, 505
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	25, 143
AgsI	TTSAA	5 cut(s)	187, 307, 572, 638, 647
AjnI	CCWGG	1 cut(s)	234
AlwI	GGATC	2 cut(s)	135, 371
Aor51HI	AGCGCT	1 cut(s)	411
AoxI	GGCC	2 cut(s)	101, 384
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	308, 666
AspLEI	GCGC	3 cut(s)	394, 412, 611
AspS9I	GGNCC	2 cut(s)	154, 210
AsuHPI	GGTGA	3 cut(s)	112, 284, 631
AvaII	GGWCC	2 cut(s)	154, 210
AxyI	CCTNAGG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	241
BceAI	ACGGC	2 cut(s)	88, 121
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	348
BfaI	CTAG	2 cut(s)	269, 501
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	5 cut(s)	101, 178, 255, 335, 417
BlsI	GCNGC	5 cut(s)	102, 179, 256, 336, 418
BmcAI	AGTACT	2 cut(s)	221, 505
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	154, 210
BmgT120I	GGNCC	2 cut(s)	154, 210
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	87, 379
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	123, 477
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 143
Bse1I	ACTGG	1 cut(s)	325
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	123, 477
BseGI	GGATG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	25, 143
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	372, 662
BseNI	ACTGG	1 cut(s)	325
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	103, 386
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	160, 208
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	25, 143
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	103, 386
Bsp143I	GATC	4 cut(s)	127, 348, 376, 487
BspACI	CCGC	8 cut(s)	25, 100, 157, 178, 334, 337, 400, 416
BspANI	GGCC	2 cut(s)	103, 386
BspCNI	CTCAG	2 cut(s)	373, 663
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	135, 371
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	123, 477
BssMI	GATC	4 cut(s)	127, 348, 376, 487
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	529, 590
BstC8I	GCNNGC	2 cut(s)	414, 607
BstDEI	CTNAG	3 cut(s)	381, 546, 671
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	3 cut(s)	394, 412, 611
BstKTI	GATC	4 cut(s)	130, 351, 379, 490
BstMBI	GATC	4 cut(s)	127, 348, 376, 487
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	72
BstZI	CGGCCG	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	103, 386
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	414, 607
CfoI	GCGC	3 cut(s)	394, 412, 611
Cfr13I	GGNCC	2 cut(s)	154, 210
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	4 cut(s)	49, 55, 220, 504
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	7 cut(s)	103, 136, 167, 386, 419, 500, 542
CviKI_1	RGCY	7 cut(s)	103, 136, 167, 386, 419, 500, 542
CviQI	GTAC	4 cut(s)	49, 55, 220, 504
DdeI	CTNAG	3 cut(s)	381, 546, 671
DpnI	GATC	4 cut(s)	129, 350, 378, 489
DpnII	GATC	4 cut(s)	127, 348, 376, 487
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
EciI	GGCGGA	2 cut(s)	146, 352
EclXI	CGGCCG	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	154, 210
Eco47III	AGCGCT	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	499
FaiI	YATR	4 cut(s)	143, 486, 497, 600
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	495
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	101, 178, 255, 335, 417
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	5 cut(s)	101, 178, 255, 335, 417
FspBI	CTAG	2 cut(s)	269, 501
GlaI	GCGC	3 cut(s)	393, 411, 610
GluI	GCNGC	5 cut(s)	101, 178, 255, 335, 417
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	103, 386
HapII	CCGG	2 cut(s)	160, 208
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	3 cut(s)	394, 412, 611
Hin1II	CATG	1 cut(s)	499
Hin6I	GCGC	3 cut(s)	392, 410, 609
HinP1I	GCGC	3 cut(s)	392, 410, 609
HinfI	GANTC	2 cut(s)	41, 147
HpaII	CCGG	2 cut(s)	160, 208
HphI	GGTGA	3 cut(s)	112, 284, 631
Hpy188I	TCNGA	3 cut(s)	109, 559, 672
Hpy188III	TCNNGA	4 cut(s)	19, 31, 131, 380
Hpy99I	CGWCG	4 cut(s)	65, 80, 83, 109
HpyAV	CCTTC	2 cut(s)	616, 641
HpyCH4III	ACNGT	2 cut(s)	529, 590
HpyCH4IV	ACGT	2 cut(s)	117, 204
HpyCH4V	TGCA	2 cut(s)	257, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	3 cut(s)	381, 546, 671
HpySE526I	ACGT	2 cut(s)	117, 204
Hsp92II	CATG	1 cut(s)	499
HspAI	GCGC	3 cut(s)	392, 410, 609
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	127, 348, 376, 487
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	87, 379
MaeI	CTAG	2 cut(s)	269, 501
MaeII	ACGT	2 cut(s)	117, 204
MaeIII	GTNAC	3 cut(s)	118, 272, 523
MalI	GATC	4 cut(s)	129, 350, 378, 489
MboI	GATC	4 cut(s)	127, 348, 376, 487
MboII	GAAGA	4 cut(s)	77, 337, 439, 650
MluCI	AATT	4 cut(s)	308, 443, 454, 666
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	87
MseI	TTAA	1 cut(s)	657
MspI	CCGG	2 cut(s)	160, 208
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	4 cut(s)	127, 348, 376, 487
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	118, 272
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	5 cut(s)	102, 179, 256, 336, 418
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	154, 210
RsaI	GTAC	4 cut(s)	50, 56, 221, 505
RsaNI	GTAC	4 cut(s)	49, 55, 220, 504
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	5 cut(s)	101, 178, 255, 335, 417
Sau3AI	GATC	4 cut(s)	127, 348, 376, 487
Sau96I	GGNCC	2 cut(s)	154, 210
ScaI	AGTACT	2 cut(s)	221, 505
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	8 cut(s)	11, 120, 156, 207, 274, 285, 630, 655
SfaNI	GCATC	2 cut(s)	87, 379
SinI	GGWCC	2 cut(s)	154, 210
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	4 cut(s)	308, 443, 454, 666
SsiI	CCGC	8 cut(s)	25, 100, 157, 178, 334, 337, 400, 416
SspMI	CTAG	2 cut(s)	269, 501
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	529, 590
TaiI	ACGT	2 cut(s)	120, 207
TasI	AATT	4 cut(s)	308, 443, 454, 666
TatI	WGTACW	2 cut(s)	219, 503
TauI	GCSGC	4 cut(s)	103, 180, 337, 419
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	118, 272
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	2 cut(s)	118, 272
TspDTI	ATGAA	3 cut(s)	50, 242, 344
TspGWI	ACGGA	3 cut(s)	494, 530, 579
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	154, 210
XapI	RAATTY	2 cut(s)	308, 666
XspI	CTAG	2 cut(s)	269, 501
ZrmI	AGTACT	2 cut(s)	221, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.