Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

30757890 .. 30760127

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1214200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGCGATTTAGGGTTCCGAGGCGGGTCCAAGTGGCCGAATCCAAACCCGAGATTCCCAAGTACGACGTGGCGGGCGGAGAAGAAGAGGACCACTCGGAAGCCCTGGACAACGACGACGGAGATGGCAGTGGCGGTATGCGGACAAGGTCGTCCGAAGGCAACGTGACTGAAGATCAGGAACCGTTCATGGGCGTCAAGGTCCGAAGAAAAGCTTCGTTTCGCAGAGAATACAGAGGCGACTACATCGACGTCCGTTCGAATCCGTACCTGATGAAAGTCTTGCAGAAACAAGGTGATAAGGAGGTTCTGTTTGCCGATAAAGTGTTGAAATTTACTGCCTCCGGGAAGATGAAGCGGCGCATTTTGATGATCACTGACTTCGCCATCTACATTGTTGACCCGGATGCCGATGCGCTCAAGCGGAGGATAGCTCTTGCAGCTGTGGAGAAGATGTGCTTGAGCGAATTGAGCGATAATTTCTTCGCAATTATCGTTCCTACCGAGTATGATGTGCTGATGGCCAGTACTCGCAAGACGGAAATAGTTACTGTCTTAGTTGAAGCTACTAAGAGTGCTTCTGATTACGAACTTGATGTTTGCTTCGCTAACAGTTTTGAGTATAATGCAGCTGCAGAAATCGTGAAGGAGGTTCAGTTTGAGGAAGTTGAAGGTCTGGGGGTGTTAGAACAAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

234

Amino Acids

26.38

Weight (kDa)

4.89

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	69 - 222	1.2e-35	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AatII	GACGTC	1 cut(s)	255
AciI	CCGC	7 cut(s)	25, 74, 78, 135, 142, 358, 424
AcoI	YGGCCR	2 cut(s)	36, 522
AcsI	RAATTY	2 cut(s)	332, 695
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	2 cut(s)	195, 252
AfaI	GTAC	3 cut(s)	65, 269, 529
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	331, 563, 671
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	5 cut(s)	215, 434, 443, 566, 632
AluI	AGCT	5 cut(s)	215, 434, 443, 566, 632
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	36, 522
ApeKI	GCWGC	3 cut(s)	440, 629, 632
ApoI	RAATTY	2 cut(s)	332, 695
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	363, 418
AspS9I	GGNCC	3 cut(s)	28, 91, 202
AsuC2I	CCSGG	2 cut(s)	346, 404
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	28, 91, 202
BalI	TGGCCA	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	452, 619, 641
BccI	CCATC	3 cut(s)	119, 395, 514
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	346, 404
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	4 cut(s)	359, 441, 630, 633
BlsI	GCNGC	4 cut(s)	360, 442, 631, 634
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	3 cut(s)	107, 346, 404
Bme18I	GGWCC	3 cut(s)	28, 91, 202
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	28, 91, 202
BmiI	GGNNCC	3 cut(s)	18, 29, 183
BmrFI	CCNGG	3 cut(s)	107, 346, 404
BmsI	GCATC	2 cut(s)	397, 403
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 418, 450
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	404, 481
BpuMI	CCSGG	2 cut(s)	346, 404
BsaHI	GRCGYC	2 cut(s)	195, 252
BsaJI	CCNNGG	2 cut(s)	20, 105
BsaXI	ACNNNNNCTCC	6 cut(s)	296, 326, 440, 470, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	20, 105
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	452, 619, 641
BshFI	GGCC	2 cut(s)	38, 524
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	345, 404
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	2 cut(s)	38, 524
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	175, 372
BspACI	CCGC	7 cut(s)	25, 74, 78, 135, 142, 358, 424
BspANI	GGCC	2 cut(s)	38, 524
BspLI	GGNNCC	3 cut(s)	18, 29, 183
BspMAI	CTGCAG	1 cut(s)	637
BspT104I	TTCGAA	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	20, 105
BssMI	GATC	2 cut(s)	175, 372
BssNI	GRCGYC	2 cut(s)	195, 252
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	186, 553, 614
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	195, 252
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	556, 570
BstF5I	GGATG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	363, 418
BstKTI	GATC	2 cut(s)	178, 375
BstMBI	GATC	2 cut(s)	175, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 471
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	105, 344, 402
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	452, 619, 641
BsuRI	GGCC	2 cut(s)	38, 524
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 375
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	2 cut(s)	363, 418
Cfr13I	GGNCC	3 cut(s)	28, 91, 202
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	64, 268, 528
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	8 cut(s)	38, 104, 215, 434, 443, 524, 566, 632
CviKI_1	RGCY	8 cut(s)	38, 104, 215, 434, 443, 524, 566, 632
CviQI	GTAC	3 cut(s)	64, 268, 528
DdeI	CTNAG	2 cut(s)	556, 570
DpnI	GATC	2 cut(s)	177, 374
DpnII	GATC	2 cut(s)	175, 372
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	2 cut(s)	36, 522
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	28, 91, 202
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	140, 191, 510, 624
FalI	AAGNNNNNCTT	4 cut(s)	199, 231, 443, 475
FatI	CATG	1 cut(s)	189
FauI	CCCGC	2 cut(s)	18, 67
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	359, 441, 630, 633
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	4 cut(s)	359, 441, 630, 633
GlaI	GCGC	2 cut(s)	362, 417
GluI	GCNGC	4 cut(s)	359, 441, 630, 633
HaeIII	GGCC	2 cut(s)	38, 524
HapII	CCGG	2 cut(s)	345, 404
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	363, 418
Hin1I	GRCGYC	2 cut(s)	195, 252
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	361, 416
HinP1I	GCGC	2 cut(s)	361, 416
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	3 cut(s)	41, 55, 262
HpaII	CCGG	2 cut(s)	345, 404
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	5 cut(s)	21, 100, 157, 206, 583
Hpy188III	TCNNGA	2 cut(s)	179, 643
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	4 cut(s)	71, 119, 122, 254
HpyAV	CCTTC	3 cut(s)	152, 640, 665
HpyCH4III	ACNGT	3 cut(s)	186, 553, 614
HpyCH4IV	ACGT	3 cut(s)	69, 165, 252
HpyCH4V	TGCA	4 cut(s)	286, 440, 629, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 471
HpyF3I	CTNAG	2 cut(s)	556, 570
HpySE526I	ACGT	3 cut(s)	69, 165, 252
Hsp92I	GRCGYC	2 cut(s)	195, 252
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	361, 416
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	175, 372
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	92, 119, 164, 284, 358, 417, 538, 662
Lsp1109I	GCAGC	3 cut(s)	452, 619, 641
LweI	GCATC	2 cut(s)	397, 403
MaeII	ACGT	3 cut(s)	69, 165, 252
MaeIII	GTNAC	2 cut(s)	166, 547
MalI	GATC	2 cut(s)	177, 374
MboI	GATC	2 cut(s)	175, 372
MboII	GAAGA	7 cut(s)	95, 98, 185, 219, 361, 463, 475
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	5 cut(s)	332, 467, 478, 489, 695
MluNI	TGGCCA	1 cut(s)	524
MnlI	CCTC	8 cut(s)	15, 82, 230, 298, 352, 420, 643, 655
Mox20I	TGGCCA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	2 cut(s)	443, 632
MspI	CCGG	2 cut(s)	345, 404
MspR9I	CCNGG	3 cut(s)	107, 346, 404
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	440, 471
NciI	CCSGG	2 cut(s)	346, 404
NdeII	GATC	2 cut(s)	175, 372
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	3 cut(s)	18, 29, 183
NmuCI	GTSAC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 501
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	41, 55, 262
PflFI	GACNNNGTC	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	360, 442, 631, 634
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	18, 29, 183
PspPI	GGNCC	3 cut(s)	28, 91, 202
PstI	CTGCAG	1 cut(s)	637
PsyI	GACNNNGTC	1 cut(s)	148
PvuII	CAGCTG	2 cut(s)	443, 632
RsaI	GTAC	3 cut(s)	65, 269, 529
RsaNI	GTAC	3 cut(s)	64, 268, 528
RseI	CAYNNNNRTG	1 cut(s)	368
SatI	GCNGC	4 cut(s)	359, 441, 630, 633
Sau3AI	GATC	2 cut(s)	175, 372
Sau96I	GGNCC	3 cut(s)	28, 91, 202
ScaI	AGTACT	1 cut(s)	529
ScrFI	CCNGG	3 cut(s)	107, 346, 404
SfaNI	GCATC	2 cut(s)	397, 403
SfcI	CTRYAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	3 cut(s)	28, 91, 202
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	419, 460
SmoI	CTYRAG	2 cut(s)	419, 460
Sse9I	AATT	5 cut(s)	332, 467, 478, 489, 695
SsiI	CCGC	7 cut(s)	25, 74, 78, 135, 142, 358, 424
StyD4I	CCNGG	3 cut(s)	105, 344, 402
TaaI	ACNGT	3 cut(s)	186, 553, 614
TaiI	ACGT	3 cut(s)	72, 168, 255
TaqI	TCGA	2 cut(s)	249, 260
TasI	AATT	5 cut(s)	332, 467, 478, 489, 695
TatI	WGTACW	1 cut(s)	527
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	41, 55, 262
TscAI	CASTG	2 cut(s)	136, 382
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	440, 629, 632
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	178, 290, 368
TspGWI	ACGGA	4 cut(s)	135, 245, 255, 554
TspRI	CASTG	2 cut(s)	136, 382
Tth111I	GACNNNGTC	1 cut(s)	148
VpaK11BI	GGWCC	3 cut(s)	28, 91, 202
XapI	RAATTY	2 cut(s)	332, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	214
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.