Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

66299304 .. 66301679

Gene Structure 2376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG440900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGACAGGTTCAATCTCCAGAGGCGGGTCAAGATGAACGAATCCAAGTACGACGAAGAGCAATCCCAAAACGACGACGCACAAGGCACCAGGATGCGGCCGTCGGCGAGCAACGTCACCGAGGATCAGGAGCCATTCATGGGAGTCAAGGTCCGCCGGAAAGCCTCGTTTCACCGTCAGTTCAACGGCGACTACATCGACGTCCGCTCCAATCCGTACTTGATGAAAATCTTGCAGAAACAAGGTGACAAGGAAGTTTTGTTTGCTGATAAAGTGTTGAAATTTACTAGTACTGGAAAAATGAAGCGGCGGATTTTGATGATCACTGACTTTGCTATCTACGTTGTTGATCCTGAGGCCGATGCGCTGAAGAGGAGGATAGCTCTTGCGGCTGTGGAGAAAATGTGCTTGAGTGAGTTGAGTGATAATTTTTTCGCAGTGATTATTCCCACGGAGTATGATTTGCTCATGGCTAGTACTCGCAAGACGGAAATCGTTACCGTCTTGGTTGAGGCTACTAAGAGTGCTTCTGATTACGAGCTTGAAGTTTGTTTCGGTAACAGTTTTGAGTATAATGCAGATGCAGAGTTAGTGAAGGAGGTTCAGTTTGAAGAAGTTGAAGGAGGTGTTAAAACAAGAATCCTGAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

217

Amino Acids

25.01

Weight (kDa)

5.71

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	52 - 205	7.3e-36	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	207
AciI	CCGC	7 cut(s)	25, 97, 154, 205, 307, 310, 389
AclWI	GGATC	2 cut(s)	132, 344
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	4 cut(s)	50, 218, 292, 478
AfiI	CCNNNNNNNGG	3 cut(s)	25, 96, 140
AgsI	TTSAA	6 cut(s)	13, 184, 280, 545, 611, 620
AhlI	ACTAGT	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	383, 541
AluI	AGCT	2 cut(s)	383, 541
AlwI	GGATC	2 cut(s)	132, 344
AoxI	GGCC	2 cut(s)	98, 357
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	109, 164, 257
AvaII	GGWCC	1 cut(s)	151
AxyI	CCTNAGG	2 cut(s)	354, 644
BanI	GGYRCC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	85, 202
BciT130I	CCWGG	1 cut(s)	91
BclI	TGATCA	1 cut(s)	321
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	2 cut(s)	288, 474
BisI	GCNGC	3 cut(s)	98, 308, 390
BlsI	GCNGC	3 cut(s)	99, 309, 391
BmcAI	AGTACT	2 cut(s)	292, 478
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	88, 132
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	84, 352, 571
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpuEI	CTTGAG	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	120, 450
BsaXI	ACNNNNNCTCC	8 cut(s)	135, 165, 191, 221, 389, 419, 590, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 96, 140
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	2 cut(s)	354, 644
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	120, 450
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	3 cut(s)	25, 96, 140
BseMII	CTCAG	2 cut(s)	345, 635
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	388
BseX3I	CGGCCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	100, 359
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	25, 96, 140
BsnI	GGCC	2 cut(s)	100, 359
Bsp143I	GATC	3 cut(s)	124, 321, 349
BspACI	CCGC	7 cut(s)	25, 97, 154, 205, 307, 310, 389
BspANI	GGCC	2 cut(s)	100, 359
BspCNI	CTCAG	2 cut(s)	346, 636
BspLI	GGNNCC	2 cut(s)	88, 132
BspPI	GGATC	2 cut(s)	132, 344
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	120, 450
BssMI	GATC	3 cut(s)	124, 321, 349
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	3 cut(s)	176, 502, 563
Bst6I	CTCTTC	2 cut(s)	51, 365
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	354, 519, 644
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	3 cut(s)	127, 324, 352
BstMBI	GATC	3 cut(s)	124, 321, 349
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstZI	CGGCCG	1 cut(s)	98
Bsu36I	CCTNAGG	2 cut(s)	354, 644
BsuRI	GGCC	2 cut(s)	100, 359
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	324, 444
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	4 cut(s)	49, 217, 291, 477
CviAII	CATG	2 cut(s)	139, 469
CviJI	RGCY	9 cut(s)	100, 133, 164, 359, 383, 392, 473, 515, 541
CviKI_1	RGCY	9 cut(s)	100, 133, 164, 359, 383, 392, 473, 515, 541
CviQI	GTAC	4 cut(s)	49, 217, 291, 477
DdeI	CTNAG	3 cut(s)	354, 519, 644
DpnI	GATC	3 cut(s)	126, 323, 351
DpnII	GATC	3 cut(s)	124, 321, 349
EaeI	YGGCCR	1 cut(s)	98
EagI	CGGCCG	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	51, 365
EarI	CTCTTC	2 cut(s)	51, 365
EciI	GGCGGA	2 cut(s)	143, 325
EclXI	CGGCCG	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	389
Eco81I	CCTNAGG	2 cut(s)	354, 644
EcoRII	CCWGG	1 cut(s)	89
FaeI	CATG	2 cut(s)	142, 472
FaiI	YATR	4 cut(s)	140, 459, 470, 573
FatI	CATG	2 cut(s)	138, 468
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	98, 308, 390
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	98, 308, 390
FspBI	CTAG	2 cut(s)	288, 474
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	98, 308, 390
HaeIII	GGCC	2 cut(s)	100, 359
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	142, 472
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	3 cut(s)	41, 144, 639
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	3 cut(s)	109, 164, 257
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	5 cut(s)	19, 31, 128, 353, 643
Hpy99I	CGWCG	5 cut(s)	56, 77, 80, 106, 203
HpyAV	CCTTC	2 cut(s)	589, 614
HpyCH4III	ACNGT	3 cut(s)	176, 502, 563
HpyCH4IV	ACGT	3 cut(s)	114, 201, 342
HpyCH4V	TGCA	3 cut(s)	235, 578, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	3 cut(s)	354, 519, 644
HpySE526I	ACGT	3 cut(s)	114, 201, 342
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	142, 472
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	124, 321, 349
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	130, 212
LpnPI	CCDG	7 cut(s)	32, 76, 103, 113, 170, 279, 366
LweI	GCATC	3 cut(s)	84, 352, 571
MaeI	CTAG	2 cut(s)	288, 474
MaeII	ACGT	3 cut(s)	114, 201, 342
MaeIII	GTNAC	4 cut(s)	115, 245, 496, 557
MalI	GATC	3 cut(s)	126, 323, 351
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	3 cut(s)	124, 321, 349
MboII	GAAGA	3 cut(s)	68, 382, 623
MluCI	AATT	2 cut(s)	281, 427
MlyI	GAGTC	1 cut(s)	153
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	3 cut(s)	124, 321, 349
NlaIII	CATG	2 cut(s)	142, 472
NlaIV	GGNNCC	2 cut(s)	88, 132
NmuCI	GTSAC	2 cut(s)	115, 245
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	41, 639
PkrI	GCNGC	3 cut(s)	99, 309, 391
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	88, 132
PspPI	GGNCC	1 cut(s)	151
RsaI	GTAC	4 cut(s)	50, 218, 292, 478
RsaNI	GTAC	4 cut(s)	49, 217, 291, 477
RseI	CAYNNNNRTG	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	3 cut(s)	98, 308, 390
Sau3AI	GATC	3 cut(s)	124, 321, 349
Sau96I	GGNCC	1 cut(s)	151
ScaI	AGTACT	2 cut(s)	292, 478
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	91
SfaNI	GCATC	3 cut(s)	84, 352, 571
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	2 cut(s)	281, 427
SsiI	CCGC	7 cut(s)	25, 97, 154, 205, 307, 310, 389
SspMI	CTAG	2 cut(s)	288, 474
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	3 cut(s)	176, 502, 563
TaiI	ACGT	3 cut(s)	117, 204, 345
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	281, 427
TatI	WGTACW	2 cut(s)	290, 476
TauI	GCSGC	3 cut(s)	100, 310, 392
TfiI	GAWTC	2 cut(s)	41, 639
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	2 cut(s)	331, 444
TseFI	GTSAC	2 cut(s)	115, 245
Tsp45I	GTSAC	2 cut(s)	115, 245
TspDTI	ATGAA	4 cut(s)	50, 127, 239, 317
TspGWI	ACGGA	3 cut(s)	204, 467, 503
TspRI	CASTG	2 cut(s)	331, 444
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	281
XspI	CTAG	2 cut(s)	288, 474
ZraI	GACGTC	1 cut(s)	202
ZrmI	AGTACT	2 cut(s)	292, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.