Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

65902733 .. 65904917

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGACAGGTTCAATCTCCAGAGGCGGGTCAAGATGAACGAATCCAAGTACGACTTCGCCGACGAAGAGCAATCCCAAAACGACGACGCACAAGGCACCAGGATGCGGCCGTCGGCGAGCAACGTCACCGAGGATCAGGAGCCATTCATGGGAGTCAAGGTCCGCCGGAAAGCCTCGTTTCACCGTCAGTTCAACGGCGACTACATCGACGTCCGCTCCAATCCGTACTTGATGAAAATCTTGCGGAAACAAGGTGACAAGGAAGTTTTGTTTGCTGATAAAGTGTTGAAATTTACTAGTACTGGAAAAATGAAGCGGCGGATTTTGATGATCACTGACTTTGCTATCTACGTTGTTGATCCTGAGGCCGATGCGCTGAAGCGGAGGATAGCTCTTGCGGCTGTGGAGAAAATGTGCTTGAGTGAGTTGAGTGATAATTTTTTCGCAGTGATTATTCCCACAGAGTATGATTTGCTCATGGCTAGTACTCGCAAGACGGAGATCGTTACTGTCTTGGTTGAGGCTACTAAGAGTGCTTCTGATTACGAGCTTGAAGTTTGTTTCGGTAACAGTTTTGAGTATAATGCAGATGCAGAGTTAGTGAAGGAGGTTCAGTTTGAAGAAGTTGAAGGAGGTGTTAAAACAAGAATCCTGAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

220

Amino Acids

25.37

Weight (kDa)

5.71

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	55 - 208	1.8e-35	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	9 cut(s)	25, 106, 163, 214, 244, 316, 319, 382, 398
AclWI	GGATC	2 cut(s)	141, 353
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	4 cut(s)	50, 227, 301, 487
AfiI	CCNNNNNNNGG	3 cut(s)	25, 105, 149
AgsI	TTSAA	6 cut(s)	13, 193, 289, 554, 620, 629
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	392, 550
AluI	AGCT	2 cut(s)	392, 550
AlwI	GGATC	2 cut(s)	141, 353
AoxI	GGCC	2 cut(s)	107, 366
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	118, 173, 266
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	2 cut(s)	363, 653
BanI	GGYRCC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	94, 211
BciT130I	CCWGG	1 cut(s)	100
BclI	TGATCA	1 cut(s)	330
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	2 cut(s)	297, 483
BisI	GCNGC	3 cut(s)	107, 317, 399
BlsI	GCNGC	3 cut(s)	108, 318, 400
BmcAI	AGTACT	2 cut(s)	301, 487
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	97, 141
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	3 cut(s)	93, 361, 580
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpuEI	CTTGAG	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	8 cut(s)	144, 174, 200, 230, 398, 428, 599, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 105, 149
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	2 cut(s)	363, 653
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	3 cut(s)	25, 105, 149
BseMII	CTCAG	2 cut(s)	354, 644
BseNI	ACTGG	1 cut(s)	307
BseX3I	CGGCCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	109, 368
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	3 cut(s)	25, 105, 149
BsnI	GGCC	2 cut(s)	109, 368
Bsp143I	GATC	4 cut(s)	133, 330, 358, 501
BspACI	CCGC	9 cut(s)	25, 106, 163, 214, 244, 316, 319, 382, 398
BspANI	GGCC	2 cut(s)	109, 368
BspCNI	CTCAG	2 cut(s)	355, 645
BspLI	GGNNCC	2 cut(s)	97, 141
BspPI	GGATC	2 cut(s)	141, 353
BspQI	GCTCTTC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	133, 330, 358, 501
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	3 cut(s)	185, 511, 572
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	363, 528, 653
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	136, 333, 361, 504
BstMBI	GATC	4 cut(s)	133, 330, 358, 501
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstZI	CGGCCG	1 cut(s)	107
Bsu36I	CCTNAGG	2 cut(s)	363, 653
BsuRI	GGCC	2 cut(s)	109, 368
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	333, 453
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	49, 226, 300, 486
CviAII	CATG	2 cut(s)	148, 478
CviJI	RGCY	9 cut(s)	109, 142, 173, 368, 392, 401, 482, 524, 550
CviKI_1	RGCY	9 cut(s)	109, 142, 173, 368, 392, 401, 482, 524, 550
CviQI	GTAC	4 cut(s)	49, 226, 300, 486
DdeI	CTNAG	3 cut(s)	363, 528, 653
DpnI	GATC	4 cut(s)	135, 332, 360, 503
DpnII	GATC	4 cut(s)	133, 330, 358, 501
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	2 cut(s)	152, 334
EclXI	CGGCCG	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	2 cut(s)	363, 653
EcoRII	CCWGG	1 cut(s)	98
FaeI	CATG	2 cut(s)	151, 481
FaiI	YATR	4 cut(s)	149, 468, 479, 582
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	2 cut(s)	147, 477
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	107, 317, 399
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	107, 317, 399
FspBI	CTAG	2 cut(s)	297, 483
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	3 cut(s)	107, 317, 399
HaeIII	GGCC	2 cut(s)	109, 368
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	151, 481
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	3 cut(s)	41, 153, 648
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	3 cut(s)	118, 173, 266
Hpy188I	TCNGA	1 cut(s)	541
Hpy188III	TCNNGA	5 cut(s)	19, 31, 137, 362, 652
Hpy99I	CGWCG	5 cut(s)	65, 86, 89, 115, 212
HpyAV	CCTTC	2 cut(s)	598, 623
HpyCH4III	ACNGT	3 cut(s)	185, 511, 572
HpyCH4IV	ACGT	3 cut(s)	123, 210, 351
HpyCH4V	TGCA	2 cut(s)	587, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	3 cut(s)	363, 528, 653
HpySE526I	ACGT	3 cut(s)	123, 210, 351
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	151, 481
HspAI	GCGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	133, 330, 358, 501
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	139, 221
LpnPI	CCDG	7 cut(s)	32, 85, 112, 122, 179, 288, 375
LweI	GCATC	3 cut(s)	93, 361, 580
MaeI	CTAG	2 cut(s)	297, 483
MaeII	ACGT	3 cut(s)	123, 210, 351
MaeIII	GTNAC	4 cut(s)	124, 254, 505, 566
MalI	GATC	4 cut(s)	135, 332, 360, 503
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	4 cut(s)	133, 330, 358, 501
MboII	GAAGA	2 cut(s)	77, 632
MluCI	AATT	2 cut(s)	290, 436
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	15, 124, 184, 358, 378, 514, 601, 626, 648
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	133, 330, 358, 501
NlaIII	CATG	2 cut(s)	151, 481
NlaIV	GGNNCC	2 cut(s)	97, 141
NmuCI	GTSAC	2 cut(s)	124, 254
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	41, 648
PkrI	GCNGC	3 cut(s)	108, 318, 400
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	97, 141
PspPI	GGNCC	1 cut(s)	160
RsaI	GTAC	4 cut(s)	50, 227, 301, 487
RsaNI	GTAC	4 cut(s)	49, 226, 300, 486
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	3 cut(s)	107, 317, 399
Sau3AI	GATC	4 cut(s)	133, 330, 358, 501
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	2 cut(s)	301, 487
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	100
SfaNI	GCATC	3 cut(s)	93, 361, 580
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	2 cut(s)	290, 436
SsiI	CCGC	9 cut(s)	25, 106, 163, 214, 244, 316, 319, 382, 398
SspMI	CTAG	2 cut(s)	297, 483
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	3 cut(s)	185, 511, 572
TaiI	ACGT	3 cut(s)	126, 213, 354
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	290, 436
TatI	WGTACW	2 cut(s)	299, 485
TauI	GCSGC	3 cut(s)	109, 319, 401
TfiI	GAWTC	2 cut(s)	41, 648
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	2 cut(s)	340, 453
TseFI	GTSAC	2 cut(s)	124, 254
Tsp45I	GTSAC	2 cut(s)	124, 254
TspDTI	ATGAA	4 cut(s)	50, 136, 248, 326
TspGWI	ACGGA	2 cut(s)	213, 512
TspRI	CASTG	2 cut(s)	340, 453
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	2 cut(s)	297, 483
ZraI	GACGTC	1 cut(s)	211
ZrmI	AGTACT	2 cut(s)	301, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.