Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

34652381 .. 34655153

Gene Structure 2773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1283800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGCGGTTTAAGGTTTCGAGGCGGGTCCAAGTGGCCGAATCCAAACCCGATATTCCCAAGTACGACGTGGCGGATGAAGAAGAAGAGGACCCCTCGGACGCCCTGGACGGCCAAAACGACGACGGAGAAGGTAGTGGCCGAACGCGGATAAGGCCGTCCGGTGGCAACGTGACCGAAGATCAGGAGCCTTTCATGGGAGTCAAGGTCCGCAGAAAAGCTTCGTTTCGCAGAGAATACAGAGGCGACTACATCGACGTCCGCTCCAATCCGTACCTGATGAAAGTCTTGCAGAAACAAGGTGACAAGGAGGTTCTGTTCGCCGATAAGGTCTTGAAGTTTACTGCTTCCGGGAAGATGAAACGCCGCATTTTGATGATCACTGACTTCGCCATCTACATTGTTGACCCGGTTGCCGATGCGCTTAAACGGAGGATAGCTCTTGCAGCTGTGGAGAAGATGTGCTTGAGCGAATTGAGCGATAATTTTTTCGCGATTATCATTCCTACGGAGTATGATGTGCTGATGGCCAGTACTCGCAAGACGGAAATTGTTACTGTCTTAGTTGAAGCTACTAAGAGTGCTTCTGATTACGAACTCAATGTTTGTTTCGCTAACAGTTTTGAGTATAATGCAACTGCGGAATTCGTGAAGGAGGTTCAGTTTGAGGAAGTTGAAGGTCTGGGGGTGTTAGAACAAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

236

Amino Acids

26.68

Weight (kDa)

4.94

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	71 - 224	4.4e-36	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccBSI	CCGCTC	2 cut(s)	7, 264
AccII	CGCG	2 cut(s)	148, 494
AciI	CCGC	8 cut(s)	7, 25, 74, 148, 211, 262, 367, 641
AcoI	YGGCCR	4 cut(s)	36, 112, 139, 528
AcsI	RAATTY	2 cut(s)	644, 701
AcyI	GRCGYC	2 cut(s)	102, 258
AfaI	GTAC	3 cut(s)	65, 275, 535
AfiI	CCNNNNNNNGG	2 cut(s)	164, 197
AgsI	TTSAA	3 cut(s)	337, 569, 677
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	221, 440, 449, 572
AluI	AGCT	4 cut(s)	221, 440, 449, 572
AoxI	GGCC	5 cut(s)	36, 112, 139, 155, 528
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	644, 701
Asp700I	GAANNNNTTC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	28, 91, 208
AsuC2I	CCSGG	2 cut(s)	352, 410
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	28, 91, 208
BalI	TGGCCA	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	2 cut(s)	401, 520
BceAI	ACGGC	2 cut(s)	127, 142
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	2 cut(s)	352, 410
BisI	GCNGC	2 cut(s)	367, 447
BlsI	GCNGC	2 cut(s)	368, 448
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	3 cut(s)	107, 352, 410
Bme18I	GGWCC	3 cut(s)	28, 91, 208
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	28, 91, 208
BmiI	GGNNCC	3 cut(s)	29, 93, 189
BmrFI	CCNGG	3 cut(s)	107, 352, 410
BmsI	GCATC	1 cut(s)	409
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 424, 456
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	2 cut(s)	352, 410
BsaHI	GRCGYC	2 cut(s)	102, 258
BsaJI	CCNNGG	2 cut(s)	96, 105
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 197
Bse1I	ACTGG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	96, 105
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	164, 197
BseNI	ACTGG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	458
Bsh1236I	CGCG	2 cut(s)	148, 494
BshFI	GGCC	5 cut(s)	38, 114, 141, 157, 530
BsiSI	CCGG	3 cut(s)	162, 351, 410
BslI	CCNNNNNNNGG	2 cut(s)	164, 197
BsnI	GGCC	5 cut(s)	38, 114, 141, 157, 530
Bsp143I	GATC	2 cut(s)	181, 378
Bsp68I	TCGCGA	1 cut(s)	494
BspACI	CCGC	8 cut(s)	7, 25, 74, 148, 211, 262, 367, 641
BspANI	GGCC	5 cut(s)	38, 114, 141, 157, 530
BspFNI	CGCG	2 cut(s)	148, 494
BspLI	GGNNCC	3 cut(s)	29, 93, 189
BsrBI	CCGCTC	2 cut(s)	7, 264
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	96, 105
BssMI	GATC	2 cut(s)	181, 378
BssNI	GRCGYC	2 cut(s)	102, 258
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	559, 620
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	102, 258
BstDEI	CTNAG	2 cut(s)	562, 576
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	2 cut(s)	148, 494
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	184, 381
BstMBI	GATC	2 cut(s)	181, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 446, 477
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	105, 350, 408
BstUI	CGCG	2 cut(s)	148, 494
BstV1I	GCAGC	1 cut(s)	458
BsuRI	GGCC	5 cut(s)	38, 114, 141, 157, 530
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	381
BtuMI	TCGCGA	1 cut(s)	494
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	3 cut(s)	28, 91, 208
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	64, 274, 534
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	3 cut(s)	64, 274, 534
DdeI	CTNAG	2 cut(s)	562, 576
DpnI	GATC	2 cut(s)	183, 380
DpnII	GATC	2 cut(s)	181, 378
EaeI	YGGCCR	4 cut(s)	36, 112, 139, 528
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	89
Eco47I	GGWCC	3 cut(s)	28, 91, 208
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	197, 516, 630
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	367, 447
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	367, 447
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	2 cut(s)	367, 447
HaeIII	GGCC	5 cut(s)	38, 114, 141, 157, 530
HapII	CCGG	3 cut(s)	162, 351, 410
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	2 cut(s)	102, 258
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	2 cut(s)	41, 201
HpaII	CCGG	3 cut(s)	162, 351, 410
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	342, 406
Hpy188I	TCNGA	2 cut(s)	100, 589
Hpy188III	TCNNGA	4 cut(s)	185, 334, 493, 649
Hpy8I	GTNNAC	2 cut(s)	342, 406
Hpy99I	CGWCG	4 cut(s)	71, 125, 128, 260
HpyAV	CCTTC	3 cut(s)	125, 646, 671
HpyCH4III	ACNGT	2 cut(s)	559, 620
HpyCH4IV	ACGT	3 cut(s)	69, 171, 258
HpyCH4V	TGCA	3 cut(s)	292, 446, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 446, 477
HpyF3I	CTNAG	2 cut(s)	562, 576
HpySE526I	ACGT	3 cut(s)	69, 171, 258
Hsp92I	GRCGYC	2 cut(s)	102, 258
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	181, 378
LmnI	GCTCC	3 cut(s)	4, 187, 269
LpnPI	CCDG	9 cut(s)	92, 119, 170, 175, 290, 364, 423, 544, 668
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	409
MaeII	ACGT	3 cut(s)	69, 171, 258
MaeIII	GTNAC	3 cut(s)	172, 302, 553
MalI	GATC	2 cut(s)	183, 380
MbiI	CCGCTC	2 cut(s)	7, 264
MboI	GATC	2 cut(s)	181, 378
MboII	GAAGA	6 cut(s)	92, 95, 98, 191, 367, 469
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	5 cut(s)	473, 484, 549, 644, 701
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	15, 82, 106, 236, 304, 426, 649, 661
Mox20I	TGGCCA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	2 cut(s)	12, 426
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	3 cut(s)	162, 351, 410
MspR9I	CCNGG	3 cut(s)	107, 352, 410
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	148, 494
MwoI	GCNNNNNNNGC	3 cut(s)	154, 446, 477
NciI	CCSGG	2 cut(s)	352, 410
NdeII	GATC	2 cut(s)	181, 378
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	29, 93, 189
NmuCI	GTSAC	2 cut(s)	172, 302
NruI	TCGCGA	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	368, 448
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	29, 93, 189
PspPI	GGNCC	3 cut(s)	28, 91, 208
PspPPI	RGGWCCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	449
RruI	TCGCGA	1 cut(s)	494
RsaI	GTAC	3 cut(s)	65, 275, 535
RsaNI	GTAC	3 cut(s)	64, 274, 534
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	12, 426
SatI	GCNGC	2 cut(s)	367, 447
Sau3AI	GATC	2 cut(s)	181, 378
Sau96I	GGNCC	3 cut(s)	28, 91, 208
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	3 cut(s)	107, 352, 410
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	3 cut(s)	28, 91, 208
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	5 cut(s)	473, 484, 549, 644, 701
SsiI	CCGC	8 cut(s)	7, 25, 74, 148, 211, 262, 367, 641
StyD4I	CCNGG	3 cut(s)	105, 350, 408
TaaI	ACNGT	2 cut(s)	559, 620
TaiI	ACGT	3 cut(s)	72, 174, 261
TaqI	TCGA	2 cut(s)	20, 255
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	5 cut(s)	473, 484, 549, 644, 701
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	12, 426
Tru9I	TTAA	2 cut(s)	12, 426
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	172, 302
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	172, 302
TspDTI	ATGAA	4 cut(s)	93, 184, 296, 374
TspGWI	ACGGA	5 cut(s)	141, 261, 445, 524, 560
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	3 cut(s)	28, 91, 208
XapI	RAATTY	2 cut(s)	644, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	220
ZraI	GACGTC	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.