AT5G54750

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011907
Physical Location & Seq
Forward (+)
22241478 .. 22243721
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54750.2

Sequence Viewer

Length: 561 bp
ATGGCTCCGGTTGGTCCTCGATCCGGTGATGCGATCTTCTCTAGCATTGATCGTGTGAATGCGGAGTTGTTCACGTTGACGTATGGTGCTATTGTGCGTCAATTGCTTACTGACCTGGAAGAAGTAGAGGAAGTTAACAAACAGCTTGATCAAATGGGATACAACATTGGAATCCGACTTATCGATGAGTTTCTAGCTAAATCTGGTGTTTCCAGATGCGTTGACTTTAAGGAAACTGCTGAAATGATTGCCAAGGTGGGTTTCAAGATGTTCTTAGGAGTCACTGCATCAGTGACAAGCTGGGACTCGGACGGGACTTGCTGCAGTATAATCTTAGAGGACAATCCCCTAGTTGATTTCGTCGAGCTTCCCGATACTTGCCAAGGTCTTTACTACTGCAATGTCTTAAGTGGAGTCATTAGAGGAGCTTTGGAAATGGTCTCAATGAAGACAGAAGTGACATGGACGCGTGATGTTCTTCGAGGAGATGATGCTTATGAGTTGCAAGTAAAGCTACTGAAACAAGTCGCTGAGGAATATCCTTACAAGGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

186

Amino Acids

20.76

Weight (kDa)

4.35

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 24 - 184 2.9e-35 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54750 AT5G54750
fragaria_vesca FvH4_3g21920
malus_domestica MD03G1210500.v1.1 MD11G1225200.v1.1
prunus_persica Prupe.4G204700_v2.0.a1
pyrus_communis pycom03g15920 pycom11g19870
rosa_chinensis RchiOBHm_Chr5g0037731
rosa_laevigata RLG00000033805
rosa_multiflora Rmu_sc0006558.1_g000039
rosa_roxburghii Rroxscaffold_1G00043170
rosa_rugosa Rorug05G0166800 Rorug05G0166900
rosa_samantha Rh5AG256100 Rh5BG258300 Rh5CG291600 Rh5DG268000
rosa_wichuraiana Rw5G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 469
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 6 cut(s) 145, 197, 300, 367, 428, 514
AluI AGCT 6 cut(s) 145, 197, 300, 367, 428, 514
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 455
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 152
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 3 cut(s) 42, 194, 350
BfmI CTRYAG 1 cut(s) 322
BfrI CTTAAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 4 cut(s) 19, 206, 296, 481
BpiI GAAGAC 1 cut(s) 455
Bpu10I CCTNAGC 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 252, 382
BsaWI WCCGGW 2 cut(s) 7, 23
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 252, 382
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 522
BseRI GAGGAG 2 cut(s) 438, 498
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 469
BshVI ATCGAT 1 cut(s) 183
BsiSI CCGG 2 cut(s) 8, 24
BslFI GGGAC 2 cut(s) 317, 328
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 2 cut(s) 317, 328
BsmI GAATGC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 445
Bsp143I GATC 4 cut(s) 20, 33, 49, 148
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 252, 382
BssMI GATC 4 cut(s) 20, 33, 49, 148
BssT1I CCWWGG 2 cut(s) 252, 382
Bst2UI CCWGG 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 406
BstDEI CTNAG 3 cut(s) 274, 334, 531
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 1 cut(s) 469
BstKTI GATC 4 cut(s) 23, 36, 52, 151
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 4 cut(s) 20, 33, 49, 148
BstMWI GCNNNNNNNGC 2 cut(s) 103, 511
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 556
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 282, 297
Cfr13I GGNCC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 2 cut(s) 86, 475
CviAII CATG 1 cut(s) 462
CviJI RGCY 7 cut(s) 5, 145, 197, 300, 367, 428, 514
CviKI_1 RGCY 7 cut(s) 5, 145, 197, 300, 367, 428, 514
DdeI CTNAG 3 cut(s) 274, 334, 531
DpnI GATC 4 cut(s) 22, 35, 51, 150
DpnII GATC 4 cut(s) 20, 33, 49, 148
Eco130I CCWWGG 2 cut(s) 252, 382
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 252, 382
ErhI CCWWGG 2 cut(s) 252, 382
FaeI CATG 1 cut(s) 465
FaiI YATR 4 cut(s) 84, 329, 463, 498
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 2 cut(s) 317, 328
FatI CATG 1 cut(s) 461
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 322
FspBI CTAG 3 cut(s) 42, 194, 350
GluI GCNGC 1 cut(s) 322
GsaI CCCAGC 1 cut(s) 304
HapII CCGG 2 cut(s) 8, 24
HgaI GACGC 2 cut(s) 86, 475
Hin1II CATG 1 cut(s) 465
HincII GTYRAC 3 cut(s) 78, 136, 223
HindII GTYRAC 3 cut(s) 78, 136, 223
HinfI GANTC 4 cut(s) 171, 279, 305, 414
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 2 cut(s) 8, 24
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 4 cut(s) 72, 78, 136, 223
Hpy188I TCNGA 2 cut(s) 176, 310
Hpy188III TCNNGA 3 cut(s) 213, 265, 371
Hpy8I GTNNAC 4 cut(s) 72, 78, 136, 223
Hpy99I CGWCG 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 74, 80
HpyCH4V TGCA 4 cut(s) 287, 324, 399, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 511
HpyF3I CTNAG 3 cut(s) 274, 334, 531
HpySE526I ACGT 2 cut(s) 74, 80
Hsp92II CATG 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 20, 33, 49, 148
LmnI GCTCC 2 cut(s) 10, 425
LpnPI CCDG 7 cut(s) 21, 37, 101, 128, 189, 226, 286
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 4 cut(s) 19, 206, 296, 481
MaeI CTAG 3 cut(s) 42, 194, 350
MaeII ACGT 2 cut(s) 74, 80
MaeIII GTNAC 3 cut(s) 280, 292, 457
MalI GATC 4 cut(s) 22, 35, 51, 150
MboI GATC 4 cut(s) 20, 33, 49, 148
MboII GAAGA 4 cut(s) 28, 131, 460, 470
MfeI CAATTG 1 cut(s) 101
MluCI AATT 1 cut(s) 101
MluI ACGCGT 1 cut(s) 467
MlyI GAGTC 3 cut(s) 288, 299, 423
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 27, 121, 331, 416, 476, 526
MseI TTAA 3 cut(s) 135, 228, 407
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 2 cut(s) 8, 24
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 469
MwoI GCNNNNNNNGC 2 cut(s) 103, 511
NdeII GATC 4 cut(s) 20, 33, 49, 148
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 280, 292, 457
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 323
PleI GAGTC 3 cut(s) 287, 299, 422
PpsI GAGTC 3 cut(s) 287, 299, 422
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 326
SaqAI TTAA 3 cut(s) 135, 228, 407
SatI GCNGC 1 cut(s) 322
Sau3AI GATC 4 cut(s) 20, 33, 49, 148
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 3 cut(s) 288, 299, 423
ScrFI CCNGG 1 cut(s) 116
SfaNI GCATC 4 cut(s) 19, 206, 296, 481
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 1 cut(s) 101
SsiI CCGC 1 cut(s) 62
SspMI CTAG 3 cut(s) 42, 194, 350
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 2 cut(s) 252, 382
TaiI ACGT 2 cut(s) 77, 83
TaqI TCGA 4 cut(s) 19, 183, 363, 481
TasI AATT 1 cut(s) 101
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 3 cut(s) 135, 228, 407
Tru9I TTAA 3 cut(s) 135, 228, 407
TscAI CASTG 2 cut(s) 289, 297
TseFI GTSAC 3 cut(s) 280, 292, 457
TseI GCWGC 1 cut(s) 321
Tsp45I GTSAC 3 cut(s) 280, 292, 457
TspDTI ATGAA 1 cut(s) 461
TspRI CASTG 2 cut(s) 289, 297
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 14
XspI CTAG 3 cut(s) 42, 194, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.