Rh5BG258300

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011907
Physical Location & Seq
Reverse (-)
32317910 .. 32321739
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG258300.1

Sequence Viewer

Length: 531 bp
ATGCCTCCCGTTGGTCCCCGATCCGGTGATGCAATCTTCGCTAACGTCGAACGCGTGAATGCGGAGCTGTTTACTTTGACCTATGGTGCCATTGTGCGCCAGCTGCTCACTGATCTTGAGGAGGTTGAAGAGGTCAACAAGCAGCTTGATCAAATGGGCTATAATATTGGGATTCGTCTAATCGATGAGTTTCTAGCAAAATCTAATGTTTCTAGATGCGTTGACTTCAAAGAGACAGCTGAAGTAATTGCAAAGATTGGCTTCAAAATGTTCTTGGGGGTCACAGCATCTGTTACAAATTGGGATGCTGATGGAACATGCTGCAGTATTGTTCTGGAGGACAATCCTCTGGTTGATTTTGTTGAGCTTCCAGATACTTGTCAAGGACTGTACTACTGTAACATCTTAAGTGGAGTCGTAAGAGGTGCCTTAGAAATGGTGAGTTGTACTTGTAACCTCTTCTGCTGCACTGATTTTCCAAATGTCCACTTTAAATTAATTTCTGCCTTGAGCTTTTTAATCAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

176

Amino Acids

19.35

Weight (kDa)

4.39

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 24 - 161 3.8e-39 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54750 AT5G54750
fragaria_vesca FvH4_3g21920
malus_domestica MD03G1210500.v1.1 MD11G1225200.v1.1
prunus_persica Prupe.4G204700_v2.0.a1
pyrus_communis pycom03g15920 pycom11g19870
rosa_chinensis RchiOBHm_Chr5g0037731
rosa_laevigata RLG00000033805
rosa_multiflora Rmu_sc0006558.1_g000039
rosa_roxburghii Rroxscaffold_1G00043170
rosa_rugosa Rorug05G0166800 Rorug05G0166900
rosa_samantha Rh5AG256100 Rh5BG258300 Rh5CG291600 Rh5DG268000
rosa_wichuraiana Rw5G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 425
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 392, 448
AfiI CCNNNNNNNGG 2 cut(s) 11, 23
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 128, 229, 265
AluBI AGCT 6 cut(s) 67, 103, 145, 239, 367, 513
AluI AGCT 6 cut(s) 67, 103, 145, 239, 367, 513
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 290
ApeKI GCWGC 4 cut(s) 103, 142, 321, 465
AseI ATTAAT 1 cut(s) 497
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 38, 451
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 2 cut(s) 86, 425
BbvI GCAGC 4 cut(s) 90, 154, 308, 452
BccI CCATC 1 cut(s) 305
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 194, 213
BfmI CTRYAG 1 cut(s) 322
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 104, 143, 322, 466
BlsI GCNGC 4 cut(s) 105, 144, 323, 467
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 3 cut(s) 16, 88, 427
BmsI GCATC 4 cut(s) 19, 206, 295, 296
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 137, 529
Bsa29I ATCGAT 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 23
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 11, 23
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 4 cut(s) 90, 154, 308, 452
BsgI GTGCAG 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 54
BshNI GGYRCC 2 cut(s) 86, 425
BshVI ATCGAT 1 cut(s) 183
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 11, 23
BsmAI GTCTC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 20, 112, 148
BspACI CCGC 1 cut(s) 62
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 3 cut(s) 16, 88, 427
BspMAI CTGCAG 1 cut(s) 326
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 2 cut(s) 86, 425
BspTI CTTAAG 1 cut(s) 406
BssMI GATC 3 cut(s) 20, 112, 148
Bst4CI ACNGT 2 cut(s) 390, 398
Bst6I CTCTTC 2 cut(s) 123, 464
BstAFI CTTAAG 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 430
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 23, 115, 151
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 3 cut(s) 20, 112, 148
BstMWI GCNNNNNNNGC 2 cut(s) 38, 103
BstNSI RCATGY 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 4 cut(s) 90, 154, 308, 452
Bsu15I ATCGAT 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 108, 468, 529
Cac8I GCNNGC 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 2 cut(s) 391, 447
CviAII CATG 1 cut(s) 318
CviJI RGCY 8 cut(s) 67, 103, 145, 159, 239, 261, 367, 513
CviKI_1 RGCY 8 cut(s) 67, 103, 145, 159, 239, 261, 367, 513
CviQI GTAC 2 cut(s) 391, 447
DdeI CTNAG 1 cut(s) 430
DpnI GATC 3 cut(s) 22, 114, 150
DpnII GATC 3 cut(s) 20, 112, 148
DraI TTTAAA 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 123, 464
EarI CTCTTC 2 cut(s) 123, 464
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 261
FaeI CATG 1 cut(s) 321
FaiI YATR 3 cut(s) 84, 162, 319
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 1 cut(s) 317
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 104, 143, 322, 466
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 4 cut(s) 104, 143, 322, 466
FspBI CTAG 2 cut(s) 194, 213
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 104, 143, 322, 466
GsuI CTGGAG 1 cut(s) 356
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 321
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 136, 223
HindII GTYRAC 2 cut(s) 136, 223
HinfI GANTC 2 cut(s) 172, 414
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 38, 451
Hpy166II GTNNAC 4 cut(s) 72, 136, 223, 487
Hpy188III TCNNGA 4 cut(s) 116, 213, 335, 371
Hpy8I GTNNAC 4 cut(s) 72, 136, 223, 487
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 390, 398
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 32, 251, 324, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 103
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 321
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 20, 112, 148
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 37, 113, 320, 335, 384
Lsp1109I GCAGC 4 cut(s) 90, 154, 308, 452
LweI GCATC 4 cut(s) 19, 206, 295, 296
MaeI CTAG 2 cut(s) 194, 213
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 4 cut(s) 280, 292, 398, 452
MalI GATC 3 cut(s) 22, 114, 150
MboI GATC 3 cut(s) 20, 112, 148
MboII GAAGA 3 cut(s) 28, 140, 451
MluCI AATT 4 cut(s) 246, 298, 494, 498
MluI ACGCGT 1 cut(s) 52
MlyI GAGTC 1 cut(s) 423
MnlI CCTC 8 cut(s) 15, 112, 115, 124, 331, 357, 416, 467
MseI TTAA 4 cut(s) 407, 492, 497, 518
MspA1I CMGCKG 2 cut(s) 103, 239
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 38, 103
NdeII GATC 3 cut(s) 20, 112, 148
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 3 cut(s) 16, 88, 427
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 51
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 4 cut(s) 105, 144, 323, 467
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 16, 88, 427
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 326
PstNI CAGNNNCTG 1 cut(s) 290
PvuII CAGCTG 2 cut(s) 103, 239
RsaI GTAC 2 cut(s) 392, 448
RsaNI GTAC 2 cut(s) 391, 447
SaqAI TTAA 4 cut(s) 407, 492, 497, 518
SatI GCNGC 4 cut(s) 104, 143, 322, 466
Sau3AI GATC 3 cut(s) 20, 112, 148
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 423
SfaNI GCATC 4 cut(s) 19, 206, 295, 296
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 3 cut(s) 116, 406, 508
SmoI CTYRAG 3 cut(s) 116, 406, 508
Sse9I AATT 4 cut(s) 246, 298, 494, 498
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 166
SspMI CTAG 2 cut(s) 194, 213
TaaI ACNGT 2 cut(s) 390, 398
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 48, 183
TasI AATT 4 cut(s) 246, 298, 494, 498
TatI WGTACW 2 cut(s) 390, 446
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 4 cut(s) 407, 492, 497, 518
Tru9I TTAA 4 cut(s) 407, 492, 497, 518
TscAI CASTG 3 cut(s) 115, 475, 529
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 4 cut(s) 103, 142, 321, 465
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 3 cut(s) 115, 475, 529
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 14
VspI ATTAAT 1 cut(s) 497
XbaI TCTAGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 321
XspI CTAG 2 cut(s) 194, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.