Prupe.4G204700_v2.0.a1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011907
Physical Location & Seq
Reverse (-)
12744185 .. 12747096
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G204700.1

Sequence Viewer

Length: 561 bp
ATGCCTCCTGTTGGCCCTCGATCCGGTGACGCAATCTTCGCTAACGTTGAACGCGTGAATGCGGAGCTGTTTACGTTGACGTATGGTGCAATCGTGCGCCAGCTGCTCACGGACCTTGAGGAGGTTGAAGAGGTTAACAAGCAGCTCGACCAAATGGGCTATAATATTGGAATTCGATTAATCGATGAGTTTCTCGCAAAATCTAATGTATCTAGATGTGTTGACTTCAAAGAAACCGCTGAAGTGATTGCAAAGATTGGTTTCAAAATGTTCTTGGGGGTCACTGCATCTGTTACGAATTGGGATGCTGATGGAACATGTTGCAGCATTGTTCTGGAGGACAATCCTCTGGTAGACTTTGTTGAGCTTCCAGATACTTGTCAGGGTCTGTACTATTGCAACATCTTGAGTGGAGTTGTAAGAGGTGCCTTAGAAATGGTATCCATGAAGACTGAAATCAGTTGGATCCGTGATATGCTTCGAGGTGATGATGCATTTGAATTGCAAGTTAAACTACTCAAGCAAGTTCCAGAAGAGTACCCATACAAAGATGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

187

Amino Acids

20.89

Weight (kDa)

4.36

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54750 AT5G54750
fragaria_vesca FvH4_3g21920
malus_domestica MD03G1210500.v1.1 MD11G1225200.v1.1
prunus_persica Prupe.4G204700_v2.0.a1
pyrus_communis pycom03g15920 pycom11g19870
rosa_chinensis RchiOBHm_Chr5g0037731
rosa_laevigata RLG00000033805
rosa_multiflora Rmu_sc0006558.1_g000039
rosa_roxburghii Rroxscaffold_1G00043170
rosa_rugosa Rorug05G0166800 Rorug05G0166900
rosa_samantha Rh5AG256100 Rh5BG258300 Rh5CG291600 Rh5DG268000
rosa_wichuraiana Rw5G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 62, 237
AclI AACGTT 1 cut(s) 45
AclWI GGATC 3 cut(s) 15, 460, 473
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 392, 539
AfiI CCNNNNNNNGG 3 cut(s) 11, 23, 121
AflIII ACRYGT 2 cut(s) 52, 317
AgsI TTSAA 5 cut(s) 50, 128, 229, 265, 500
AluBI AGCT 4 cut(s) 67, 103, 145, 367
AluI AGCT 4 cut(s) 67, 103, 145, 367
AlwI GGATC 3 cut(s) 15, 460, 473
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 103, 142, 324
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AseI ATTAAT 1 cut(s) 179
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 14, 112
AsuHPI GGTGA 2 cut(s) 38, 497
AvaII GGWCC 1 cut(s) 112
BamHI GGATCC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 90, 154, 336
BccI CCATC 1 cut(s) 305
BciVI GTATCC 1 cut(s) 451
BfaI CTAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 3 cut(s) 104, 143, 325
BlsI GCNGC 3 cut(s) 105, 144, 326
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 14, 112
BmiI GGNNCC 2 cut(s) 427, 467
BmsI GCATC 3 cut(s) 295, 296, 481
BpiI GAAGAC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 3 cut(s) 137, 427, 503
Bsa29I ATCGAT 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 23, 121
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 11, 23, 121
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 90, 154, 336
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 425
BshVI ATCGAT 1 cut(s) 183
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 11, 23, 121
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 20, 465
BspACI CCGC 2 cut(s) 62, 237
BspANI GGCC 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 427, 467
BspPI GGATC 3 cut(s) 15, 460, 473
BspT107I GGYRCC 1 cut(s) 425
BssMI GATC 2 cut(s) 20, 465
Bst6I CTCTTC 2 cut(s) 123, 528
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 23, 468
BstMBI GATC 2 cut(s) 20, 465
BstMWI GCNNNNNNNGC 2 cut(s) 38, 103
BstNSI RCATGY 1 cut(s) 321
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 90, 154, 336
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 14, 112
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 391, 538
CviAII CATG 2 cut(s) 318, 445
CviJI RGCY 6 cut(s) 15, 67, 103, 145, 159, 367
CviKI_1 RGCY 6 cut(s) 15, 67, 103, 145, 159, 367
CviQI GTAC 2 cut(s) 391, 538
DdeI CTNAG 1 cut(s) 430
DpnI GATC 2 cut(s) 22, 467
DpnII GATC 2 cut(s) 20, 465
Eam1104I CTCTTC 2 cut(s) 123, 528
EarI CTCTTC 2 cut(s) 123, 528
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 496
FaeI CATG 2 cut(s) 321, 448
FaiI YATR 6 cut(s) 84, 162, 319, 446, 476, 544
FatI CATG 2 cut(s) 317, 444
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 104, 143, 325
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 104, 143, 325
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 104, 143, 325
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 99
Hin1II CATG 2 cut(s) 321, 448
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 3 cut(s) 78, 136, 223
HindII GTYRAC 3 cut(s) 78, 136, 223
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 38, 497
Hpy166II GTNNAC 5 cut(s) 72, 78, 136, 223, 355
Hpy188III TCNNGA 5 cut(s) 213, 335, 371, 406, 530
Hpy8I GTNNAC 5 cut(s) 72, 78, 136, 223, 355
HpyCH4IV ACGT 3 cut(s) 45, 74, 80
HpyCH4V TGCA 7 cut(s) 89, 251, 287, 324, 399, 494, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 103
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 3 cut(s) 45, 74, 80
Hsp92II CATG 2 cut(s) 321, 448
HspAI GCGC 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 2 cut(s) 20, 465
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 21, 37, 113, 320, 335, 368, 384, 543
Lsp1109I GCAGC 3 cut(s) 90, 154, 336
LweI GCATC 3 cut(s) 295, 296, 481
MaeI CTAG 1 cut(s) 213
MaeII ACGT 3 cut(s) 45, 74, 80
MaeIII GTNAC 3 cut(s) 26, 280, 292
MalI GATC 2 cut(s) 22, 467
MboI GATC 2 cut(s) 20, 465
MboII GAAGA 4 cut(s) 28, 140, 460, 545
MflI RGATCY 1 cut(s) 465
MluCI AATT 3 cut(s) 171, 298, 500
MluI ACGCGT 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 9 cut(s) 15, 27, 112, 115, 124, 331, 357, 416, 476
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 3 cut(s) 135, 179, 510
MspA1I CMGCKG 2 cut(s) 103, 239
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 64
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 38, 103
NdeII GATC 2 cut(s) 20, 465
NlaIII CATG 2 cut(s) 321, 448
NlaIV GGNNCC 2 cut(s) 427, 467
NmuCI GTSAC 2 cut(s) 26, 280
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 321
PciI ACATGT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 105, 144, 326
PscI ACATGT 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 427, 467
PspPI GGNCC 2 cut(s) 14, 112
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 465
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 2 cut(s) 392, 539
RsaNI GTAC 2 cut(s) 391, 538
SaqAI TTAA 3 cut(s) 135, 179, 510
SatI GCNGC 3 cut(s) 104, 143, 325
Sau3AI GATC 2 cut(s) 20, 465
Sau96I GGNCC 2 cut(s) 14, 112
SfaNI GCATC 3 cut(s) 295, 296, 481
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 3 cut(s) 116, 406, 518
SmoI CTYRAG 3 cut(s) 116, 406, 518
Sse9I AATT 3 cut(s) 171, 298, 500
SsiI CCGC 2 cut(s) 62, 237
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 213
TaiI ACGT 3 cut(s) 48, 77, 83
TaqI TCGA 5 cut(s) 19, 147, 175, 183, 481
TasI AATT 3 cut(s) 171, 298, 500
TatI WGTACW 1 cut(s) 390
Tru1I TTAA 3 cut(s) 135, 179, 510
Tru9I TTAA 3 cut(s) 135, 179, 510
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 26, 280
TseI GCWGC 3 cut(s) 103, 142, 324
Tsp45I GTSAC 2 cut(s) 26, 280
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 125, 458
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.