pycom11g19870

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011907
Physical Location & Seq
Forward (+)
22412692 .. 22415108
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19870.2

Sequence Viewer

Length: 561 bp
ATGCCTCCTGCTGGCCCTCGATCTGGTGACGCAATCTTCGCCAACATTGAACGCGTGAATGCGGAGTTATTTACATTGACGTATGGTGCAATTGTGCGCCAGCTGCTCACGGATCTTGAGGAGGTTGAAGAGGTTAACAAGCAGCTTGATCAAATGGGCTATAATATCGGCATTCGATTAATTGATGAGTTTCTAGCAAAATCTAATGTATCTAGATGTGTTGACTTCAAGGAGACAGCTGAAGTAATTGCAAAGGTTGGTTTCAAAATGTTCTTGGGGGTCACCGCATCTGTTACAAATTGGGATGCTGATGGAACATGTTGCAGTATTGTTCTGGAGGACAATCCTCTGGTAGACTTTGTTGAGCTTCCGGATACTTGCCAAGGTCTTTACTATTGCAATATCTTAAGTGGAGTTGTAAGAGGGGCCTTAGAAATGGTATCGATGAAGACTGAAATCAGTTGGATCCGTGATATGCTTCGAGGAGATGATGCATTCGAGTTGCAAGTTAAGCTCCTCAAGCAAATTCCAGAAGAGTACCCGTACAAAGATGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

187

Amino Acids

20.87

Weight (kDa)

4.36

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54750 AT5G54750
fragaria_vesca FvH4_3g21920
malus_domestica MD03G1210500.v1.1 MD11G1225200.v1.1
prunus_persica Prupe.4G204700_v2.0.a1
pyrus_communis pycom03g15920 pycom11g19870
rosa_chinensis RchiOBHm_Chr5g0037731
rosa_laevigata RLG00000033805
rosa_multiflora Rmu_sc0006558.1_g000039
rosa_roxburghii Rroxscaffold_1G00043170
rosa_rugosa Rorug05G0166800 Rorug05G0166900
rosa_samantha Rh5AG256100 Rh5BG258300 Rh5CG291600 Rh5DG268000
rosa_wichuraiana Rw5G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 2 cut(s) 62, 285
AclWI GGATC 3 cut(s) 120, 460, 473
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 539, 545
AfiI CCNNNNNNNGG 2 cut(s) 11, 23
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 2 cut(s) 52, 317
AgsI TTSAA 4 cut(s) 50, 128, 229, 265
AluBI AGCT 5 cut(s) 103, 145, 239, 367, 514
AluI AGCT 5 cut(s) 103, 145, 239, 367, 514
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 3 cut(s) 120, 460, 473
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 2 cut(s) 13, 426
ApeKI GCWGC 2 cut(s) 103, 142
ApoI RAATTY 1 cut(s) 525
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AseI ATTAAT 1 cut(s) 179
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 14, 426
AsuHPI GGTGA 2 cut(s) 38, 274
BamHI GGATCC 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 2 cut(s) 90, 154
BccI CCATC 1 cut(s) 305
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 194, 213
BfrI CTTAAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 104, 143
BlsI GCNGC 2 cut(s) 105, 144
BmgT120I GGNCC 2 cut(s) 14, 426
BmiI GGNNCC 2 cut(s) 427, 467
BmsI GCATC 3 cut(s) 295, 296, 481
BpiI GAAGAC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 137, 503
Bsa29I ATCGAT 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 23
BseAI TCCGGA 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 11, 23
BseRI GAGGAG 3 cut(s) 134, 498, 506
BseXI GCAGC 2 cut(s) 90, 154
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 15, 428
BshVI ATCGAT 1 cut(s) 443
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 11, 23
BsmAI GTCTC 1 cut(s) 227
BsmI GAATGC 3 cut(s) 64, 171, 494
BsnI GGCC 2 cut(s) 15, 428
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 4 cut(s) 20, 112, 148, 465
BspACI CCGC 2 cut(s) 62, 285
BspANI GGCC 2 cut(s) 15, 428
BspDI ATCGAT 1 cut(s) 443
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 427, 467
BspPI GGATC 3 cut(s) 120, 460, 473
BspTI CTTAAG 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 4 cut(s) 20, 112, 148, 465
BssT1I CCWWGG 1 cut(s) 382
Bst6I CTCTTC 2 cut(s) 123, 528
BstAFI CTTAAG 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 13, 101
BstDEI CTNAG 1 cut(s) 430
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 23, 115, 151, 468
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 4 cut(s) 20, 112, 148, 465
BstMWI GCNNNNNNNGC 4 cut(s) 38, 103, 511, 520
BstNSI RCATGY 1 cut(s) 321
BstPI GGTNACC 1 cut(s) 280
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 90, 154
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 2 cut(s) 112, 465
BstYI RGATCY 2 cut(s) 112, 465
Bsu15I ATCGAT 1 cut(s) 443
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 15, 428
BsuTUI ATCGAT 1 cut(s) 443
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 13, 101
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 14, 426
ClaI ATCGAT 1 cut(s) 443
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 538, 544
CviAII CATG 1 cut(s) 318
CviJI RGCY 8 cut(s) 15, 103, 145, 159, 239, 367, 428, 514
CviKI_1 RGCY 8 cut(s) 15, 103, 145, 159, 239, 367, 428, 514
CviQI GTAC 2 cut(s) 538, 544
DdeI CTNAG 1 cut(s) 430
DpnI GATC 4 cut(s) 22, 114, 150, 467
DpnII GATC 4 cut(s) 20, 112, 148, 465
Eam1104I CTCTTC 2 cut(s) 123, 528
EarI CTCTTC 2 cut(s) 123, 528
Eco130I CCWWGG 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 1 cut(s) 321
FaiI YATR 4 cut(s) 84, 162, 319, 476
FatI CATG 1 cut(s) 317
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 104, 143
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 104, 143
FspBI CTAG 2 cut(s) 194, 213
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 104, 143
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 2 cut(s) 15, 428
HapII CCGG 1 cut(s) 371
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 321
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 136, 223
HindII GTYRAC 2 cut(s) 136, 223
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 38, 274
Hpy166II GTNNAC 3 cut(s) 136, 223, 355
Hpy188III TCNNGA 5 cut(s) 116, 213, 335, 371, 530
Hpy8I GTNNAC 3 cut(s) 136, 223, 355
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 6 cut(s) 89, 251, 324, 399, 494, 505
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 103, 511, 520
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 321
HspAI GCGC 1 cut(s) 97
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 20, 112, 148, 465
LmnI GCTCC 1 cut(s) 519
LpnPI CCDG 7 cut(s) 9, 21, 113, 320, 335, 384, 543
Lsp1109I GCAGC 2 cut(s) 90, 154
LweI GCATC 3 cut(s) 295, 296, 481
MaeI CTAG 2 cut(s) 194, 213
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 26, 280, 292
MalI GATC 4 cut(s) 22, 114, 150, 467
MboI GATC 4 cut(s) 20, 112, 148, 465
MboII GAAGA 4 cut(s) 28, 140, 460, 545
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 2 cut(s) 112, 465
MluCI AATT 5 cut(s) 90, 180, 246, 298, 525
MluI ACGCGT 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 443
Mph1103I ATGCAT 1 cut(s) 496
MroI TCCGGA 1 cut(s) 370
MseI TTAA 4 cut(s) 135, 179, 407, 510
MspA1I CMGCKG 2 cut(s) 103, 239
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 3 cut(s) 64, 171, 494
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 4 cut(s) 38, 103, 511, 520
NdeII GATC 4 cut(s) 20, 112, 148, 465
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 2 cut(s) 427, 467
NmuCI GTSAC 2 cut(s) 26, 280
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 321
PciI ACATGT 1 cut(s) 317
PctI GAATGC 3 cut(s) 64, 171, 494
PkrI GCNGC 2 cut(s) 105, 144
PscI ACATGT 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 427, 467
PspPI GGNCC 2 cut(s) 14, 426
PsuI RGATCY 2 cut(s) 112, 465
PvuII CAGCTG 2 cut(s) 103, 239
RsaI GTAC 2 cut(s) 539, 545
RsaNI GTAC 2 cut(s) 538, 544
SaqAI TTAA 4 cut(s) 135, 179, 407, 510
SatI GCNGC 2 cut(s) 104, 143
Sau3AI GATC 4 cut(s) 20, 112, 148, 465
Sau96I GGNCC 2 cut(s) 14, 426
SfaNI GCATC 3 cut(s) 295, 296, 481
SmlI CTYRAG 3 cut(s) 116, 406, 518
SmoI CTYRAG 3 cut(s) 116, 406, 518
Sse9I AATT 5 cut(s) 90, 180, 246, 298, 525
SsiI CCGC 2 cut(s) 62, 285
SspMI CTAG 2 cut(s) 194, 213
StyI CCWWGG 1 cut(s) 382
TaiI ACGT 1 cut(s) 83
TaqI TCGA 5 cut(s) 19, 175, 443, 481, 498
TasI AATT 5 cut(s) 90, 180, 246, 298, 525
Tru1I TTAA 4 cut(s) 135, 179, 407, 510
Tru9I TTAA 4 cut(s) 135, 179, 407, 510
TseFI GTSAC 2 cut(s) 26, 280
TseI GCWGC 2 cut(s) 103, 142
Tsp45I GTSAC 2 cut(s) 26, 280
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 125, 458
Vha464I CTTAAG 1 cut(s) 406
VspI ATTAAT 1 cut(s) 179
XapI RAATTY 1 cut(s) 525
XbaI TCTAGA 1 cut(s) 212
XceI RCATGY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 2 cut(s) 194, 213
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.