Rorug05G0166800

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011907
Physical Location & Seq
Forward (+)
15494023 .. 15495526
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0166800.1

Sequence Viewer

Length: 1089 bp
ATGTCTGCAGGCAATGGACAGCTGACTGTTCCTCCTGGCTTCCGATTTCATCCAACGGACGAGGAGCTTCTCTACTATTACCTCAGGAAGAAGGTCTCTTATGAAGCCATCGACCTTGATGTTATCAGGGAGGTCGATCTCAACAAACTGGAACCCTGGGACCTTAAAGAGAAATGCAGAATAGGATCAGGGCCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGATAAGAAGTATCCAACAGGAACTAGAACAAACCGAGCAACTACAGCTGGGTTTTGGAAGGCAACTGGGAGAGATAAAGCCATCCACCTCAGCGATTCCACGAGGATTGGAATGAGGAAAACCCTAGTCTTCTACACCGGCCGCGCTCCTCATGGCCAAAAGACTGACTGGATCATGCACGAGTATCGCCTTGAAGATCATCATGATAATATTAATGTCCATGAAGTTCAGGAGGACGGATGGGTGGTTTGTAGGGTTTTCAAGAAGAAGAATCACATTAACAGAGGTTTTCAGCCAGAGTTTGGTCATCATCAAGAAGTAGAACATGACTTGATCACGCACATGAAGGCAAGTGGTTCTCATGCCCAAGTAGTACTAGATCATCATCATCATCATCAGCCAAAACAAAACCATCACCACCATCTGGAAGCTTCACTGTATGATTACCCTAACACTTTCGATGGTTCGATGCACCTGCCGCAGTTGTTCAGTCCAGAGTCCGCAGCTGCTGCAGCAGCTAATAATTCATCATCATTTCTATCTGCACCTAATACCAATATGTCGGCTTTGAACCCCCTGGACTTGGAGTGCTCTCAAAACCTGTTAAAGCTAACCTCCACCACGGCCGGTTCTTGTGGACTCAATATGCAACAGCAACAGCAGCAGCAGGAGATGAGGTCGTTCAATGGTGATTGGTCATTCTTGGACAAGCTCCTCCAATCTCATCACCCTCAGCCCCAGGATCATCATCATGTGGCCACTGCCGCCGCTACTACTTCAACAACGCAGAGATTATTTCCATTTCAATACCTTGGCTGCAGCGGATCAACTACTCATGTCGACATTTTAAAGTTCTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

362

Amino Acids

41.38

Weight (kDa)

6.87

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 139 1.5e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54750 AT5G54750
fragaria_vesca FvH4_3g21920
malus_domestica MD03G1210500.v1.1 MD11G1225200.v1.1
prunus_persica Prupe.4G204700_v2.0.a1
pyrus_communis pycom03g15920 pycom11g19870
rosa_chinensis RchiOBHm_Chr5g0037731
rosa_laevigata RLG00000033805
rosa_multiflora Rmu_sc0006558.1_g000039
rosa_roxburghii Rroxscaffold_1G00043170
rosa_rugosa Rorug05G0166800 Rorug05G0166900
rosa_samantha Rh5AG256100 Rh5BG258300 Rh5CG291600 Rh5DG268000
rosa_wichuraiana Rw5G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 708
AccB7I CCANNNNNTGG 2 cut(s) 527, 649
AccI GTMKAC 1 cut(s) 1065
AccII CGCG 1 cut(s) 369
AciI CCGC 6 cut(s) 367, 704, 726, 990, 993, 1047
AclWI GGATC 4 cut(s) 193, 404, 975, 1057
AcoI YGGCCR 4 cut(s) 364, 379, 849, 981
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 2 cut(s) 209, 600
AfiI CCNNNNNNNGG 3 cut(s) 527, 649, 808
AgsI TTSAA 6 cut(s) 419, 487, 796, 910, 1005, 1031
AjnI CCWGG 4 cut(s) 34, 155, 801, 963
AluBI AGCT 8 cut(s) 22, 67, 272, 656, 731, 743, 835, 937
AluI AGCT 8 cut(s) 22, 67, 272, 656, 731, 743, 835, 937
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 4 cut(s) 193, 404, 975, 1057
AlwNI CAGNNNCTG 1 cut(s) 734
AoxI GGCC 5 cut(s) 191, 364, 379, 849, 981
ApeKI GCWGC 9 cut(s) 728, 731, 734, 737, 740, 886, 889, 1041, 1044
AseI ATTAAT 1 cut(s) 438
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 160, 191
AsuHPI GGTGA 3 cut(s) 632, 926, 944
AvaII GGWCC 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 83
BalI TGGCCA 2 cut(s) 381, 983
BauI CACGAG 2 cut(s) 325, 404
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 818
BbvCI CCTCAGC 2 cut(s) 314, 957
BbvI GCAGC 9 cut(s) 718, 721, 740, 749, 752, 898, 901, 1028, 1056
BccI CCATC 6 cut(s) 116, 314, 459, 645, 654, 680
BceAI ACGGC 1 cut(s) 864
BcgI CGANNNNNNTGC 4 cut(s) 392, 426, 682, 716
BciT130I CCWGG 4 cut(s) 36, 157, 803, 965
BciVI GTATCC 1 cut(s) 246
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 3 cut(s) 249, 350, 602
BfmI CTRYAG 4 cut(s) 6, 267, 735, 1042
BfuAI ACCTGC 1 cut(s) 708
BfuI GTATCC 1 cut(s) 246
BmcAI AGTACT 1 cut(s) 600
Bme1390I CCNGG 4 cut(s) 36, 157, 803, 965
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 160, 191
BmiI GGNNCC 2 cut(s) 153, 161
BmrFI CCNGG 4 cut(s) 36, 157, 803, 965
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 684
BmuI ACTGGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 346
Bpu10I CCTNAGC 2 cut(s) 314, 957
BsaBI GATNNNNATC 2 cut(s) 609, 972
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 6 cut(s) 155, 156, 801, 846, 963, 1036
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 887, 917
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 649, 808
Bse118I RCCGGY 2 cut(s) 362, 851
Bse1I ACTGG 3 cut(s) 153, 295, 398
Bse21I CCTNAGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 2 cut(s) 609, 972
BseBI CCWGG 4 cut(s) 36, 157, 803, 965
BseDI CCNNGG 6 cut(s) 155, 156, 801, 846, 963, 1036
BseGI GGATG 3 cut(s) 49, 306, 470
BseJI GATNNNNATC 2 cut(s) 609, 972
BseLI CCNNNNNNNGG 3 cut(s) 527, 649, 808
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 4 cut(s) 97, 209, 328, 971
BseNI ACTGG 3 cut(s) 153, 295, 398
BseRI GAGGAG 3 cut(s) 77, 363, 929
BseX3I CGGCCG 2 cut(s) 364, 849
BseXI GCAGC 9 cut(s) 718, 721, 740, 749, 752, 898, 901, 1028, 1056
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 2 cut(s) 367, 852
BshFI GGCC 5 cut(s) 193, 366, 381, 851, 983
BsiEI CGRYCG 2 cut(s) 367, 852
BsiHKAI GWGCWC 1 cut(s) 818
BsiSI CCGG 2 cut(s) 363, 852
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 527, 649, 808
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 5 cut(s) 193, 366, 381, 851, 983
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 818
Bsp143I GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
BspACI CCGC 6 cut(s) 367, 704, 726, 990, 993, 1047
BspANI GGCC 5 cut(s) 193, 366, 381, 851, 983
BspCNI CTCAG 4 cut(s) 96, 208, 327, 970
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 153, 161
BspMAI CTGCAG 3 cut(s) 10, 739, 1046
BspMI ACCTGC 1 cut(s) 708
BspPI GGATC 4 cut(s) 193, 404, 975, 1057
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 2 cut(s) 362, 851
BsrI ACTGG 3 cut(s) 153, 295, 398
BssAI RCCGGY 2 cut(s) 362, 851
BssECI CCNNGG 6 cut(s) 155, 156, 801, 846, 963, 1036
BssMI GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
BssSI CACGAG 2 cut(s) 325, 404
BssT1I CCWWGG 1 cut(s) 1036
Bst2BI CACGAG 2 cut(s) 325, 404
Bst2UI CCWGG 4 cut(s) 36, 157, 803, 965
Bst4CI ACNGT 2 cut(s) 28, 663
BstAPI GCANNNNNTGC 1 cut(s) 734
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 4 cut(s) 83, 195, 314, 957
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 3 cut(s) 49, 306, 470
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 8 cut(s) 139, 188, 399, 424, 561, 607, 970, 1052
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
BstMCI CGRYCG 2 cut(s) 367, 852
BstMWI GCNNNNNNNGC 7 cut(s) 269, 703, 734, 737, 740, 886, 989
BstNI CCWGG 4 cut(s) 36, 157, 803, 965
BstSCI CCNGG 4 cut(s) 34, 155, 801, 963
BstSFI CTRYAG 4 cut(s) 6, 267, 735, 1042
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 9 cut(s) 718, 721, 740, 749, 752, 898, 901, 1028, 1056
BstV2I GAAGAC 1 cut(s) 346
BstZI CGGCCG 2 cut(s) 364, 849
Bsu36I CCTNAGG 1 cut(s) 83
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 5 cut(s) 193, 366, 381, 851, 983
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 3 cut(s) 49, 306, 470
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 2 cut(s) 659, 984
BveI ACCTGC 1 cut(s) 708
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 371
Cfr10I RCCGGY 2 cut(s) 362, 851
Cfr13I GGNCC 2 cut(s) 160, 191
Csp6I GTAC 2 cut(s) 208, 599
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 9 cut(s) 377, 400, 428, 446, 551, 568, 587, 977, 1061
CviQI GTAC 2 cut(s) 208, 599
DdeI CTNAG 4 cut(s) 83, 195, 314, 957
DpnI GATC 8 cut(s) 138, 187, 398, 423, 560, 606, 969, 1051
DpnII GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
DraI TTTAAA 1 cut(s) 1074
EaeI YGGCCR 4 cut(s) 364, 379, 849, 981
EagI CGGCCG 2 cut(s) 364, 849
EclXI CGGCCG 2 cut(s) 364, 849
Eco130I CCWWGG 1 cut(s) 1036
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 2 cut(s) 364, 849
Eco57I CTGAAG 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 160, 191
EcoRII CCWGG 4 cut(s) 34, 155, 801, 963
EcoT14I CCWWGG 1 cut(s) 1036
ErhI CCWWGG 1 cut(s) 1036
FaeI CATG 9 cut(s) 380, 403, 431, 449, 554, 571, 590, 980, 1064
FaqI GGGAC 1 cut(s) 173
FatI CATG 9 cut(s) 376, 399, 427, 445, 550, 567, 586, 976, 1060
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 1065
FokI GGATG 3 cut(s) 36, 293, 477
FspBI CTAG 3 cut(s) 249, 350, 602
GlaI GCGC 1 cut(s) 370
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 5 cut(s) 193, 366, 381, 851, 983
HapII CCGG 2 cut(s) 363, 852
HhaI GCGC 1 cut(s) 371
Hin1II CATG 9 cut(s) 380, 403, 431, 449, 554, 571, 590, 980, 1064
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HincII GTYRAC 1 cut(s) 1066
HindII GTYRAC 1 cut(s) 1066
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 4 cut(s) 320, 496, 722, 864
HpaII CCGG 2 cut(s) 363, 852
HphI GGTGA 3 cut(s) 632, 926, 944
Hpy166II GTNNAC 2 cut(s) 863, 1066
Hpy188I TCNGA 2 cut(s) 44, 198
Hpy188III TCNNGA 7 cut(s) 85, 428, 455, 487, 539, 650, 719
Hpy8I GTNNAC 2 cut(s) 863, 1066
HpyAV CCTTC 3 cut(s) 85, 277, 565
HpyCH4III ACNGT 2 cut(s) 28, 663
HpyCH4V TGCA 8 cut(s) 8, 177, 403, 697, 737, 770, 874, 1044
HpyF10VI GCNNNNNNNGC 7 cut(s) 269, 703, 734, 737, 740, 886, 989
HpyF3I CTNAG 4 cut(s) 83, 195, 314, 957
Hsp92II CATG 9 cut(s) 380, 403, 431, 449, 554, 571, 590, 980, 1064
HspAI GCGC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
LmnI GCTCC 3 cut(s) 64, 376, 942
Lsp1109I GCAGC 9 cut(s) 718, 721, 740, 749, 752, 898, 901, 1028, 1056
LweI GCATC 1 cut(s) 684
MaeI CTAG 3 cut(s) 249, 350, 602
MalI GATC 8 cut(s) 138, 187, 398, 423, 560, 606, 969, 1051
MboI GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
MboII GAAGA 6 cut(s) 100, 205, 346, 431, 502, 505
MhlI GDGCHC 1 cut(s) 818
MlsI TGGCCA 2 cut(s) 381, 983
MluCI AATT 1 cut(s) 748
MluNI TGGCCA 2 cut(s) 381, 983
MlyI GAGTC 2 cut(s) 731, 858
MmeI TCCRAC 2 cut(s) 77, 263
Mox20I TGGCCA 2 cut(s) 381, 983
MscI TGGCCA 2 cut(s) 381, 983
MseI TTAA 5 cut(s) 165, 438, 504, 830, 1073
MslI CAYNNNNRTG 2 cut(s) 566, 975
Msp20I TGGCCA 2 cut(s) 381, 983
MspA1I CMGCKG 4 cut(s) 22, 272, 731, 1047
MspI CCGG 2 cut(s) 363, 852
MspR9I CCNGG 4 cut(s) 36, 157, 803, 965
MvaI CCWGG 4 cut(s) 36, 157, 803, 965
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 7 cut(s) 269, 703, 734, 737, 740, 886, 989
NdeII GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
NlaIII CATG 9 cut(s) 380, 403, 431, 449, 554, 571, 590, 980, 1064
NlaIV GGNNCC 2 cut(s) 153, 161
PagI TCATGA 1 cut(s) 427
PaqCI CACCTGC 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 156
PfeI GAWTC 2 cut(s) 320, 496
PflMI CCANNNNNTGG 2 cut(s) 527, 649
PleI GAGTC 2 cut(s) 730, 858
PpsI GAGTC 2 cut(s) 730, 858
PpuMI RGGWCCY 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 4 cut(s) 34, 155, 801, 963
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 4 cut(s) 34, 155, 801, 963
PspN4I GGNNCC 2 cut(s) 153, 161
PspPI GGNCC 2 cut(s) 160, 191
PspPPI RGGWCCY 1 cut(s) 160
PstI CTGCAG 3 cut(s) 10, 739, 1046
PstNI CAGNNNCTG 1 cut(s) 734
PvuII CAGCTG 3 cut(s) 22, 272, 731
RsaI GTAC 2 cut(s) 209, 600
RsaNI GTAC 2 cut(s) 208, 599
RseI CAYNNNNRTG 2 cut(s) 566, 975
SalI GTCGAC 1 cut(s) 1064
SaqAI TTAA 5 cut(s) 165, 438, 504, 830, 1073
Sau3AI GATC 8 cut(s) 136, 185, 396, 421, 558, 604, 967, 1049
Sau96I GGNCC 2 cut(s) 160, 191
ScaI AGTACT 1 cut(s) 600
SchI GAGTC 2 cut(s) 731, 858
ScrFI CCNGG 4 cut(s) 36, 157, 803, 965
SduI GDGCHC 1 cut(s) 818
SfaNI GCATC 1 cut(s) 684
SfcI CTRYAG 4 cut(s) 6, 267, 735, 1042
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 566, 975
Sse9I AATT 1 cut(s) 748
SsiI CCGC 6 cut(s) 367, 704, 726, 990, 993, 1047
SspI AATATT 1 cut(s) 436
SspMI CTAG 3 cut(s) 249, 350, 602
StyD4I CCNGG 4 cut(s) 34, 155, 801, 963
StyI CCWWGG 1 cut(s) 1036
TaaI ACNGT 2 cut(s) 28, 663
TaqI TCGA 5 cut(s) 111, 135, 684, 692, 1065
TasI AATT 1 cut(s) 748
TatI WGTACW 1 cut(s) 598
TauI GCSGC 4 cut(s) 369, 706, 992, 995
TfiI GAWTC 2 cut(s) 320, 496
Tru1I TTAA 5 cut(s) 165, 438, 504, 830, 1073
Tru9I TTAA 5 cut(s) 165, 438, 504, 830, 1073
TscAI CASTG 2 cut(s) 666, 991
TseI GCWGC 9 cut(s) 728, 731, 734, 737, 740, 886, 889, 1041, 1044
TspDTI ATGAA 5 cut(s) 38, 117, 462, 584, 741
TspGWI ACGGA 2 cut(s) 71, 477
TspRI CASTG 2 cut(s) 666, 991
Van91I CCANNNNNTGG 2 cut(s) 527, 649
VpaK11BI GGWCC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 1065
XspI CTAG 3 cut(s) 249, 350, 602
ZrmI AGTACT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.