Rorug05G0166900

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001356
Physical Location & Seq
Forward (+)
15499454 .. 15506005
6552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0166900.1

Sequence Viewer

Length: 1809 bp
ATGAAGTACGTGTTGGTGACGGGTGGTGTTGTTAGTGGACTCGGCAAAGGAGTCACGGCCAGTAGTATTGGGTTGCTTCTTCAAGCTTGTGGCCTTCGTGTTACGTCAATCAAAATTGATCCTTACTTGAACACTGATGCTGGGACAATGTCTCCTTTTGAGCATGGGGAGGTGTTCGTATTAGACGATGGCGGTGAGGTTGACCTTGACCTCGGAAATTATGAGCGGTTTCTGGATCTCACTTTGACCCGTGACAACAATATCACAACTGGAAAAATTTATCAGTCTGTTATTGACAAGGAGAGAAAGGGAGACTATCTTGGAAAGACTGTCCAGGTTGTTCCTCACATTACGGATGCCATCCAAGAGTGGATAGAACGTGTGGCAATGGTACCTGTGGACGGGAAAGAAGGTCCAGCTGATGTATGTGTCATCGAATTGGGTGGAACTATAGGGGATATTGAATCAATGCCCTTTATTGAGGCCCTTGGCCAATTTTCTTATCGTGTTGGTCCCGGAAATTTCTGCTTGGTTCATGTCAGCCTTGTGCCTGTTCTGAATGTTGTCGGTGAGCAGAAAACAAAGCCTACACAGCATAGTGTTCGGGTACTTAGAGGACAGGGTTTGACACCTAATATTCTAGCTTGTAGGAGTACAAAGCCACTTGAGGAGAATGTGAAGGCAAAACTTGCTCAATTTTGCCACGTACCGGCAGAAAATATTGTCACTCTTTATGATGTTCCAAACATCTGGCACATCCCATTGCTTTTAAGAGATCAAAAGGCACATGAAGCAATCTTGAAAGGATTAAACCTTCAGAGGGTTGCTAGAGAGCCAAATTTGAAGGAATGGACAACCAGGACAGAAATTTCCTCAAATTTACATGATTCTGTCAGAATTGCAATGGTTGGAAAATACACCGGTCTTTCAGATGCTTACCTCTCTGTTCTAAAGGCTCTTCTACATGCTTCTGTTGCTTGCCGTCGGAAACTTGTTGTAGATTGGGTTGCAGCAGGTGACCTTGAAGATGTTACTGCTAAAGAGGCTCCTGAGGTTCATAAGGCTGCATGGGATCTTTTGAAGGGCGCTGATGGTGTTCTAGTTCCAGGAGGATTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTGCGGCAAAGTATGCTCGTGAAAACAAAGTTCCATTCCTGGGCATTTGCCTGGGAATGCAAATTGCTGTTATTGAGTTTGCACGATCTGTTCTTGGTATGCTTGATGCTAACAGCACGGAGTTTGATCCTGAAACTACAAGTCCTTGTGTCGTATTTATGCCAGAGGGTTCAAAAACACATATGGGAGGCACTATGCGTCTGGGATCAAGGAGGACCTACTTCACGGTTACTGACTGCAAATCTGCAAAATTGTATGGAGATGTGGCGTTTGTTGATGAACGACATCGACATAGATATGAGGTCAATCCTGATATGATATTGCAATTCGAAAGTGCTGGCTTATCATTTGTTGGCAGAGATGAAACTGGTCGGCGCATGGAGATTATTGAGCTGCCTGCCCATCCGTACTTTGTTGGTGTTCAGTTCCATCCCGAATTTAAGTCAAGGCCAGGCAAACCTTCTGCTCTGTTCTTAGGACTAATAGCAGCATGCAGGCGTTCAGATACAATCCTACAAAACAATGGCCATCAGATAAAGCCCGTTGCAAATGGGACTAGTAATGGACGCTTCACAGTGAAATCCCACCAGAATGGACATGCATTTAAGTCATCAAATGGGTGTCTAAATGGTGTGTATAGCAATGGTAATGGCGTGCACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

602

Amino Acids

65.74

Weight (kDa)

7.03

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_synth_N PF06418 2 - 272 1.6e-122 CTP synthase N-terminus
GATase PF00117 310 - 543 3.7e-42 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1004
Acc36I ACCTGC 1 cut(s) 1004
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 3 cut(s) 192, 226, 1148
AclWI GGATC 5 cut(s) 113, 243, 1080, 1265, 1357
AcoI YGGCCR 3 cut(s) 57, 490, 1669
AcsI RAATTY 7 cut(s) 276, 520, 838, 867, 877, 1140, 1580
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 6 cut(s) 8, 393, 609, 655, 708, 1553
AfiI CCNNNNNNNGG 4 cut(s) 401, 709, 820, 1184
AflIII ACRYGT 2 cut(s) 9, 379
AgeI ACCGGT 1 cut(s) 920
AgsI TTSAA 8 cut(s) 83, 130, 464, 802, 844, 1025, 1081, 1317
AhlI ACTAGT 1 cut(s) 1700
AjnI CCWGG 6 cut(s) 333, 857, 1105, 1182, 1194, 1594
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 86, 419, 644, 1537
AluI AGCT 4 cut(s) 86, 419, 644, 1537
Alw21I GWGCWC 1 cut(s) 1803
Alw26I GTCTC 2 cut(s) 156, 306
Alw44I GTGCAC 1 cut(s) 1799
AlwI GGATC 5 cut(s) 113, 243, 1080, 1265, 1357
AoxI GGCC 6 cut(s) 57, 91, 483, 490, 1592, 1669
ApaLI GTGCAC 1 cut(s) 1799
ApeKI GCWGC 4 cut(s) 1010, 1064, 1537, 1631
ApoI RAATTY 7 cut(s) 276, 520, 838, 867, 877, 1140, 1580
AsiGI ACCGGT 1 cut(s) 920
Asp718I GGTACC 1 cut(s) 391
AspLEI GCGC 2 cut(s) 1088, 1521
AspS9I GGNCC 4 cut(s) 413, 484, 512, 1359
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 5 cut(s) 28, 206, 581, 1028, 1130
AsuII TTCGAA 1 cut(s) 1473
AvaII GGWCC 3 cut(s) 413, 512, 1359
AxyI CCTNAGG 1 cut(s) 1050
BaeGI GKGCMC 1 cut(s) 1803
BalI TGGCCA 2 cut(s) 492, 1671
BanI GGYRCC 1 cut(s) 391
BauI CACGAG 1 cut(s) 1161
Bbv12I GWGCWC 1 cut(s) 1803
BbvI GCAGC 4 cut(s) 1022, 1051, 1524, 1643
BccI CCATC 6 cut(s) 182, 368, 1085, 1554, 1581, 1680
BceAI ACGGC 2 cut(s) 72, 966
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 6 cut(s) 335, 859, 1107, 1184, 1196, 1596
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 156, 306
BcuI ACTAGT 1 cut(s) 1700
BfaI CTAG 4 cut(s) 641, 828, 1100, 1701
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 1089
BfuAI ACCTGC 1 cut(s) 1004
BisI GCNGC 5 cut(s) 1011, 1065, 1149, 1538, 1632
BlsI GCNGC 5 cut(s) 1012, 1066, 1150, 1539, 1633
Bme1390I CCNGG 7 cut(s) 335, 516, 859, 1107, 1184, 1196, 1596
Bme18I GGWCC 3 cut(s) 413, 512, 1359
BmgT120I GGNCC 4 cut(s) 413, 484, 512, 1359
BmiI GGNNCC 3 cut(s) 393, 514, 1047
BmrFI CCNGG 7 cut(s) 335, 516, 859, 1107, 1184, 1196, 1596
BmsI GCATC 4 cut(s) 127, 346, 922, 1240
Bpu14I TTCGAA 1 cut(s) 1473
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 516
BsaAI YACGTR 2 cut(s) 10, 706
BsaJI CCNNGG 4 cut(s) 211, 487, 1183, 1195
BsaWI WCCGGW 1 cut(s) 920
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 709, 820, 1184
Bse118I RCCGGY 2 cut(s) 709, 920
Bse1I ACTGG 3 cut(s) 60, 274, 1516
Bse21I CCTNAGG 1 cut(s) 1050
Bse3DI GCAATG 4 cut(s) 393, 761, 909, 1792
BseBI CCWGG 6 cut(s) 335, 859, 1107, 1184, 1196, 1596
BseDI CCNNGG 4 cut(s) 211, 487, 1183, 1195
BseGI GGATG 5 cut(s) 360, 361, 756, 1546, 1573
BseLI CCNNNNNNNGG 4 cut(s) 401, 709, 820, 1184
BseMI GCAATG 4 cut(s) 393, 761, 909, 1792
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 60, 274, 1516
BseRI GAGGAG 2 cut(s) 683, 1140
BseSI GKGCMC 1 cut(s) 1803
BseXI GCAGC 4 cut(s) 1022, 1051, 1524, 1643
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 6 cut(s) 59, 93, 485, 492, 1594, 1671
BshNI GGYRCC 1 cut(s) 391
BshTI ACCGGT 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 1803
BsiSI CCGG 3 cut(s) 516, 710, 921
BslFI GGGAC 3 cut(s) 157, 498, 1711
BslI CCNNNNNNNGG 4 cut(s) 401, 709, 820, 1184
BsmAI GTCTC 2 cut(s) 156, 306
BsmFI GGGAC 3 cut(s) 157, 498, 1711
BsmI GAATGC 1 cut(s) 1206
BsnI GGCC 6 cut(s) 59, 93, 485, 492, 1594, 1671
Bsp119I TTCGAA 1 cut(s) 1473
Bsp1286I GDGCHC 1 cut(s) 1803
Bsp143I GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
BspACI CCGC 3 cut(s) 192, 226, 1148
BspANI GGCC 6 cut(s) 59, 93, 485, 492, 1594, 1671
BspCNI CTCAG 1 cut(s) 1042
BspLI GGNNCC 3 cut(s) 393, 514, 1047
BspMI ACCTGC 1 cut(s) 1004
BspPI GGATC 5 cut(s) 113, 243, 1080, 1265, 1357
BspQI GCTCTTC 1 cut(s) 963
BspT104I TTCGAA 1 cut(s) 1473
BspT107I GGYRCC 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 4 cut(s) 393, 761, 909, 1792
BsrFI RCCGGY 2 cut(s) 709, 920
BsrI ACTGG 3 cut(s) 60, 274, 1516
BssAI RCCGGY 2 cut(s) 709, 920
BssECI CCNNGG 4 cut(s) 211, 487, 1183, 1195
BssMI GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
BssSI CACGAG 1 cut(s) 1161
BssT1I CCWWGG 1 cut(s) 487
Bst2BI CACGAG 1 cut(s) 1161
Bst2UI CCWGG 6 cut(s) 335, 859, 1107, 1184, 1196, 1596
Bst4CI ACNGT 3 cut(s) 331, 1372, 1720
Bst6I CTCTTC 1 cut(s) 963
BstAPI GCANNNNNTGC 2 cut(s) 689, 1157
BstBAI YACGTR 2 cut(s) 10, 706
BstBI TTCGAA 1 cut(s) 1473
BstC8I GCNNGC 6 cut(s) 979, 1483, 1542, 1636, 1640, 1799
BstDEI CTNAG 3 cut(s) 611, 1050, 1618
BstEII GGTNACC 1 cut(s) 1016
BstF5I GGATG 5 cut(s) 360, 361, 756, 1546, 1573
BstH2I RGCGCY 1 cut(s) 1089
BstHHI GCGC 2 cut(s) 1088, 1521
BstKTI GATC 7 cut(s) 121, 238, 778, 1075, 1232, 1273, 1352
BstMAI GTCTC 2 cut(s) 156, 306
BstMBI GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
BstMWI GCNNNNNNNGC 6 cut(s) 592, 689, 791, 974, 1043, 1157
BstNI CCWGG 6 cut(s) 335, 859, 1107, 1184, 1196, 1596
BstNSI RCATGY 3 cut(s) 968, 1638, 1745
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 7 cut(s) 333, 514, 857, 1105, 1182, 1194, 1594
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 1803
BstV1I GCAGC 4 cut(s) 1022, 1051, 1524, 1643
BstX2I RGATCY 2 cut(s) 235, 1072
BstXI CCANNNNNNTGG 2 cut(s) 750, 1736
BstYI RGATCY 2 cut(s) 235, 1072
Bsu36I CCTNAGG 1 cut(s) 1050
BsuRI GGCC 6 cut(s) 59, 93, 485, 492, 1594, 1671
BtsCI GGATG 5 cut(s) 360, 361, 756, 1546, 1573
BtsIMutI CAGTG 2 cut(s) 132, 1725
BveI ACCTGC 1 cut(s) 1004
Cac8I GCNNGC 6 cut(s) 979, 1483, 1542, 1636, 1640, 1799
CfoI GCGC 2 cut(s) 1088, 1521
Cfr10I RCCGGY 2 cut(s) 709, 920
Cfr13I GGNCC 4 cut(s) 413, 484, 512, 1359
CseI GACGC 2 cut(s) 1331, 1719
Csp6I GTAC 6 cut(s) 7, 392, 608, 654, 707, 1552
CspAI ACCGGT 1 cut(s) 920
CviAII CATG 9 cut(s) 164, 536, 788, 884, 965, 1068, 1522, 1635, 1742
CviQI GTAC 6 cut(s) 7, 392, 608, 654, 707, 1552
DdeI CTNAG 3 cut(s) 611, 1050, 1618
DpnI GATC 7 cut(s) 120, 237, 777, 1074, 1231, 1272, 1351
DpnII GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
EaeI YGGCCR 3 cut(s) 57, 490, 1669
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 487
Eco47I GGWCC 3 cut(s) 413, 512, 1359
Eco57I CTGAAG 1 cut(s) 800
Eco81I CCTNAGG 1 cut(s) 1050
Eco91I GGTNACC 1 cut(s) 1016
EcoO109I RGGNCCY 2 cut(s) 484, 1359
EcoO65I GGTNACC 1 cut(s) 1016
EcoRII CCWGG 6 cut(s) 333, 857, 1105, 1182, 1194, 1594
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 1747
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 9 cut(s) 167, 539, 791, 887, 968, 1071, 1525, 1638, 1745
FaqI GGGAC 3 cut(s) 157, 498, 1711
FatI CATG 9 cut(s) 163, 535, 787, 883, 964, 1067, 1521, 1634, 1741
FauNDI CATATG 1 cut(s) 1326
Fnu4HI GCNGC 5 cut(s) 1011, 1065, 1149, 1538, 1632
FokI GGATG 5 cut(s) 347, 368, 743, 1533, 1560
Fsp4HI GCNGC 5 cut(s) 1011, 1065, 1149, 1538, 1632
FspBI CTAG 4 cut(s) 641, 828, 1100, 1701
GlaI GCGC 2 cut(s) 1087, 1520
GluI GCNGC 5 cut(s) 1011, 1065, 1149, 1538, 1632
GsaI CCCAGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 1089
HaeIII GGCC 6 cut(s) 59, 93, 485, 492, 1594, 1671
HapII CCGG 3 cut(s) 516, 710, 921
HgaI GACGC 2 cut(s) 1331, 1719
HhaI GCGC 2 cut(s) 1088, 1521
Hin1II CATG 9 cut(s) 167, 539, 791, 887, 968, 1071, 1525, 1638, 1745
Hin6I GCGC 2 cut(s) 1086, 1519
HinP1I GCGC 2 cut(s) 1086, 1519
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 4 cut(s) 39, 51, 464, 887
HpaII CCGG 3 cut(s) 516, 710, 921
HphI GGTGA 5 cut(s) 28, 206, 581, 1028, 1130
Hpy166II GTNNAC 4 cut(s) 38, 202, 400, 1801
Hpy188I TCNGA 8 cut(s) 215, 558, 819, 896, 931, 987, 1648, 1677
Hpy188III TCNNGA 7 cut(s) 233, 799, 1049, 1163, 1274, 1454, 1577
Hpy8I GTNNAC 4 cut(s) 38, 202, 400, 1801
Hpy99I CGWCG 1 cut(s) 987
HpyAV CCTTC 7 cut(s) 104, 404, 673, 824, 838, 1075, 1614
HpyCH4III ACNGT 3 cut(s) 331, 1372, 1720
HpyCH4IV ACGT 4 cut(s) 9, 104, 379, 705
HpyF10VI GCNNNNNNNGC 6 cut(s) 592, 689, 791, 974, 1043, 1157
HpyF3I CTNAG 3 cut(s) 611, 1050, 1618
HpySE526I ACGT 4 cut(s) 9, 104, 379, 705
Hsp92II CATG 9 cut(s) 167, 539, 791, 887, 968, 1071, 1525, 1638, 1745
HspAI GCGC 2 cut(s) 1086, 1519
KpnI GGTACC 1 cut(s) 395
Kzo9I GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 1 cut(s) 1051
Lsp1109I GCAGC 4 cut(s) 1022, 1051, 1524, 1643
LweI GCATC 4 cut(s) 127, 346, 922, 1240
MaeI CTAG 4 cut(s) 641, 828, 1100, 1701
MaeII ACGT 4 cut(s) 9, 104, 379, 705
MaeIII GTNAC 8 cut(s) 16, 52, 100, 251, 724, 1016, 1030, 1372
MalI GATC 7 cut(s) 120, 237, 777, 1074, 1231, 1272, 1351
MbiI CCGCTC 1 cut(s) 226
MboI GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
MboII GAAGA 3 cut(s) 71, 950, 1037
MflI RGATCY 2 cut(s) 235, 1072
MhlI GDGCHC 1 cut(s) 1803
MlsI TGGCCA 2 cut(s) 492, 1671
MluNI TGGCCA 2 cut(s) 492, 1671
MlyI GAGTC 2 cut(s) 33, 60
MmeI TCCRAC 2 cut(s) 889, 965
Mox20I TGGCCA 2 cut(s) 492, 1671
Mph1103I ATGCAT 1 cut(s) 1747
MscI TGGCCA 2 cut(s) 492, 1671
MseI TTAA 4 cut(s) 770, 809, 1584, 1749
MslI CAYNNNNRTG 2 cut(s) 1440, 1734
Msp20I TGGCCA 2 cut(s) 492, 1671
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 516, 710, 921
MspR9I CCNGG 7 cut(s) 335, 516, 859, 1107, 1184, 1196, 1596
Mva1269I GAATGC 1 cut(s) 1206
MvaI CCWGG 6 cut(s) 335, 859, 1107, 1184, 1196, 1596
MwoI GCNNNNNNNGC 6 cut(s) 592, 689, 791, 974, 1043, 1157
NciI CCSGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 1326
NdeII GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
NlaIII CATG 9 cut(s) 167, 539, 791, 887, 968, 1071, 1525, 1638, 1745
NlaIV GGNNCC 3 cut(s) 393, 514, 1047
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 5 cut(s) 16, 52, 251, 724, 1016
NsiI ATGCAT 1 cut(s) 1747
NspI RCATGY 3 cut(s) 968, 1638, 1745
NspV TTCGAA 1 cut(s) 1473
PaeI GCATGC 1 cut(s) 1638
PaqCI CACCTGC 1 cut(s) 1004
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 1206
PfeI GAWTC 2 cut(s) 464, 887
PflFI GACNNNGTC 1 cut(s) 148
PfoI TCCNGGA 2 cut(s) 514, 1105
PinAI ACCGGT 1 cut(s) 920
PkrI GCNGC 5 cut(s) 1012, 1066, 1150, 1539, 1633
PleI GAGTC 2 cut(s) 33, 59
PpsI GAGTC 2 cut(s) 33, 59
Ppu21I YACGTR 2 cut(s) 10, 706
PpuMI RGGWCCY 1 cut(s) 1359
Psp5II RGGWCCY 1 cut(s) 1359
Psp6I CCWGG 6 cut(s) 333, 857, 1105, 1182, 1194, 1594
PspEI GGTNACC 1 cut(s) 1016
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 6 cut(s) 333, 857, 1105, 1182, 1194, 1594
PspN4I GGNNCC 3 cut(s) 393, 514, 1047
PspPI GGNCC 4 cut(s) 413, 484, 512, 1359
PspPPI RGGWCCY 1 cut(s) 1359
PsuI RGATCY 2 cut(s) 235, 1072
PsyI GACNNNGTC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 6 cut(s) 8, 393, 609, 655, 708, 1553
RsaNI GTAC 6 cut(s) 7, 392, 608, 654, 707, 1552
RseI CAYNNNNRTG 2 cut(s) 1440, 1734
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 4 cut(s) 770, 809, 1584, 1749
SatI GCNGC 5 cut(s) 1011, 1065, 1149, 1538, 1632
Sau3AI GATC 7 cut(s) 118, 235, 775, 1072, 1229, 1270, 1349
Sau96I GGNCC 4 cut(s) 413, 484, 512, 1359
SchI GAGTC 2 cut(s) 33, 60
ScrFI CCNGG 7 cut(s) 335, 516, 859, 1107, 1184, 1196, 1596
SduI GDGCHC 1 cut(s) 1803
SfaNI GCATC 4 cut(s) 127, 346, 922, 1240
SfcI CTRYAG 1 cut(s) 450
SfuI TTCGAA 1 cut(s) 1473
SinI GGWCC 3 cut(s) 413, 512, 1359
SmiMI CAYNNNNRTG 2 cut(s) 1440, 1734
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
SpeI ACTAGT 1 cut(s) 1700
SphI GCATGC 1 cut(s) 1638
SsiI CCGC 3 cut(s) 192, 226, 1148
SspI AATATT 2 cut(s) 637, 721
SspMI CTAG 4 cut(s) 641, 828, 1100, 1701
StyD4I CCNGG 7 cut(s) 333, 514, 857, 1105, 1182, 1194, 1594
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 3 cut(s) 331, 1372, 1720
TaiI ACGT 4 cut(s) 12, 107, 382, 708
TaqI TCGA 3 cut(s) 435, 1432, 1473
TatI WGTACW 1 cut(s) 653
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 2 cut(s) 464, 887
Tru1I TTAA 4 cut(s) 770, 809, 1584, 1749
Tru9I TTAA 4 cut(s) 770, 809, 1584, 1749
TscAI CASTG 2 cut(s) 139, 1725
TseFI GTSAC 5 cut(s) 16, 52, 251, 724, 1016
TseI GCWGC 4 cut(s) 1010, 1064, 1537, 1631
Tsp45I GTSAC 5 cut(s) 16, 52, 251, 724, 1016
TspDTI ATGAA 6 cut(s) 17, 524, 804, 1046, 1437, 1521
TspGWI ACGGA 3 cut(s) 368, 1277, 1539
TspRI CASTG 2 cut(s) 139, 1725
Tth111I GACNNNGTC 1 cut(s) 148
VneI GTGCAC 1 cut(s) 1799
VpaK11BI GGWCC 3 cut(s) 413, 512, 1359
XapI RAATTY 7 cut(s) 276, 520, 838, 867, 877, 1140, 1580
XceI RCATGY 3 cut(s) 968, 1638, 1745
XspI CTAG 4 cut(s) 641, 828, 1100, 1701
Zsp2I ATGCAT 1 cut(s) 1747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.