Rw2G047370

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001356
Physical Location & Seq
Forward (+)
74697982 .. 74699684
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047370.1

Sequence Viewer

Length: 342 bp
ATGTCTGAGCTCGACGTCCAGATTCCTACAGCCTTTGATCCGTTTGCTGAGGCAAACGCTGAGGACTCGGGTGCTGGAACAAAGGAGTATGTGCACATTCGTATACAGCAACGAAATGGTAGGAAAAGCCTGACAACAGTGCAGGGACTGAAGAAGGAATTTAGCTACAACAAGATTCTCAAAGACCTTAAGAAGGAATTTTGCTGCAATGGTACAGTTGTCCAGGACCCAGAACAAGGCCAGGTGATTCAACTTCAAGGTGATCAGCGAAAGAACGTGTCTGCCTTCCTAGTTCAGGCTGGCATTGTGAAGAAGGATAACATCAAAATTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

113

Amino Acids

12.64

Weight (kDa)

8.56

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 2.9e-27 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 103
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 3 cut(s) 158, 197, 327
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 193, 236, 295
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 251, 257
AjnI CCWGG 2 cut(s) 222, 240
AluBI AGCT 2 cut(s) 10, 165
AluI AGCT 2 cut(s) 10, 165
Alw21I GWGCWC 2 cut(s) 12, 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 3 cut(s) 158, 197, 327
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 256, 272
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 12, 96
BbvCI CCTCAGC 2 cut(s) 48, 60
BbvI GCAGC 1 cut(s) 191
BciT130I CCWGG 2 cut(s) 224, 242
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 224, 242
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 224, 242
Bpu10I CCTNAGC 2 cut(s) 48, 60
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 236, 295
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 224, 242
BseLI CCNNNNNNNGG 3 cut(s) 193, 236, 295
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 39, 51
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 12, 96
BsiHKCI CYCGRG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 193, 236, 295
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 12, 96
Bsp143I GATC 2 cut(s) 37, 262
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 40, 52
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 214
BssMI GATC 2 cut(s) 37, 262
BssNAI GTATAC 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 224, 242
Bst4CI ACNGT 3 cut(s) 139, 217, 335
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 6, 48, 60
BstENI CCTNNNNNAGG 2 cut(s) 191, 293
BstKTI GATC 2 cut(s) 40, 265
BstMBI GATC 2 cut(s) 37, 262
BstNI CCWGG 2 cut(s) 224, 242
BstSCI CCNGG 2 cut(s) 222, 240
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 191
BstZ17I GTATAC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 213
CviJI RGCY 6 cut(s) 10, 32, 129, 165, 240, 299
CviKI_1 RGCY 6 cut(s) 10, 32, 129, 165, 240, 299
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 6, 48, 60
DpnI GATC 2 cut(s) 39, 264
DpnII GATC 2 cut(s) 37, 262
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 10
EcoNI CCTNNNNNAGG 2 cut(s) 191, 293
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 222, 240
EcoT38I GRGCYC 1 cut(s) 12
FaiI YATR 2 cut(s) 90, 104
FaqI GGGAC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 15
HinfI GANTC 4 cut(s) 22, 65, 175, 247
HphI GGTGA 2 cut(s) 256, 272
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 2 cut(s) 7, 341
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 94, 104
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 148, 187, 295, 307
HpyCH4III ACNGT 3 cut(s) 139, 217, 335
HpyCH4IV ACGT 2 cut(s) 15, 276
HpyCH4V TGCA 3 cut(s) 94, 142, 207
HpyF3I CTNAG 3 cut(s) 6, 48, 60
HpySE526I ACGT 2 cut(s) 15, 276
Hsp92I GRCGYC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 37, 262
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 15, 276
MalI GATC 2 cut(s) 39, 264
MboI GATC 2 cut(s) 37, 262
MboII GAAGA 2 cut(s) 163, 322
MhlI GDGCHC 2 cut(s) 12, 96
MluCI AATT 3 cut(s) 158, 197, 327
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 43, 55
MseI TTAA 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 224, 242
MvaI CCWGG 2 cut(s) 224, 242
NdeII GATC 2 cut(s) 37, 262
NlaIV GGNNCC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 22, 175, 247
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 222, 240
PspGI CCWGG 2 cut(s) 222, 240
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 148
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 37, 262
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 224, 242
SduI GDGCHC 2 cut(s) 12, 96
SetI ASST 7 cut(s) 12, 18, 167, 189, 246, 262, 279
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 3 cut(s) 158, 197, 327
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 222, 240
TaaI ACNGT 3 cut(s) 139, 217, 335
TaiI ACGT 2 cut(s) 18, 279
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 158, 197, 327
TfiI GAWTC 3 cut(s) 22, 175, 247
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 144
TseI GCWGC 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 2 cut(s) 191, 293
XapI RAATTY 3 cut(s) 158, 197, 327
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.