Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Forward (+)

16513167 .. 16513505

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGAACCAGACGTTCAGATCCCAACTGCTTTTGACCCGTTCGCCGAAGCCAAAGACGTGGATGCCCCCGGAGCCAAGGATTATGTGCATATCCGGGTGCAGCAGAGAAATGGAAAGAAGTGCTTGACGACAGTTCAAGGGCTGAAGAAGGACTTCAGCTACGACAAGATCCTCAAGGACCTTAAGAAAGAGTTCTGCTGCAACGGGAATGTCGTTCAGGACAAAGAGCTCGGCAAGATAATTCAGCTCCAAGGCGATCAGCGCAAGAACGTGCTGCAGTTTCTCGTTCAGGCCAAGATTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

113

Amino Acids

12.74

Weight (kDa)

9.13

Isoelectric Point (pI)

18.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	27 - 101	8.8e-25	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	16, 166, 321
AcuI	CTGAAG	2 cut(s)	142, 167
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	8, 140
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	3 cut(s)	162, 232, 250
AluI	AGCT	3 cut(s)	162, 232, 250
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	3 cut(s)	16, 166, 321
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	103, 201, 277
Asp700I	GAANNNNTTC	2 cut(s)	155, 194
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	2 cut(s)	72, 98
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	115, 188, 264
BcnI	CCSGG	2 cut(s)	72, 98
BfmI	CTRYAG	1 cut(s)	278
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	3 cut(s)	104, 202, 278
BlsI	GCNGC	3 cut(s)	105, 203, 279
Bme1390I	CCNGG	2 cut(s)	72, 98
Bme18I	GGWCC	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	72, 98
BmsI	GCATC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	72, 98
BsaJI	CCNNGG	3 cut(s)	70, 78, 253
BseDI	CCNNGG	3 cut(s)	70, 78, 253
BseGI	GGATG	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	115, 188, 264
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	72, 97
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	5 cut(s)	21, 171, 259, 313, 318
BspANI	GGCC	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	3 cut(s)	16, 166, 321
BspTI	CTTAAG	1 cut(s)	185
BssECI	CCNNGG	3 cut(s)	70, 78, 253
BssMI	GATC	5 cut(s)	21, 171, 259, 313, 318
BssT1I	CCWWGG	2 cut(s)	78, 253
Bst4CI	ACNGT	1 cut(s)	136
BstAFI	CTTAAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	5 cut(s)	24, 174, 262, 316, 321
BstMBI	GATC	5 cut(s)	21, 171, 259, 313, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 264
BstSCI	CCNGG	2 cut(s)	70, 96
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	115, 188, 264
BstX2I	RGATCY	2 cut(s)	21, 171
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	2 cut(s)	21, 171
BsuRI	GGCC	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	7 cut(s)	53, 77, 145, 162, 232, 250, 296
CviKI_1	RGCY	7 cut(s)	53, 77, 145, 162, 232, 250, 296
DpnI	GATC	5 cut(s)	23, 173, 261, 315, 320
DpnII	GATC	5 cut(s)	21, 171, 259, 313, 318
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	78, 253
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	142, 167
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	78, 253
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	78, 253
FaeI	CATG	1 cut(s)	332
FaiI	YATR	3 cut(s)	87, 93, 330
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 140, 172
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	104, 202, 278
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	104, 202, 278
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	104, 202, 278
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	72, 97
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	72, 97
Hpy188I	TCNGA	3 cut(s)	21, 318, 338
Hpy188III	TCNNGA	3 cut(s)	221, 307, 322
HpyAV	CCTTC	2 cut(s)	145, 304
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	3 cut(s)	15, 60, 273
HpyCH4V	TGCA	4 cut(s)	91, 103, 204, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 264
HpySE526I	ACGT	3 cut(s)	15, 60, 273
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	21, 171, 259, 313, 318
LmnI	GCTCC	2 cut(s)	74, 255
LpnPI	CCDG	5 cut(s)	24, 85, 110, 206, 278
Lsp1109I	GCAGC	3 cut(s)	115, 188, 264
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	3 cut(s)	15, 60, 273
MalI	GATC	5 cut(s)	23, 173, 261, 315, 320
MboI	GATC	5 cut(s)	21, 171, 259, 313, 318
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	2 cut(s)	21, 171
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	1 cut(s)	185
MroXI	GAANNNNTTC	2 cut(s)	155, 194
MseI	TTAA	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	72, 97
MspR9I	CCNGG	2 cut(s)	72, 98
MwoI	GCNNNNNNNGC	2 cut(s)	74, 264
NciI	CCSGG	2 cut(s)	72, 98
NdeII	GATC	5 cut(s)	21, 171, 259, 313, 318
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	2 cut(s)	155, 194
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	105, 203, 279
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	21, 171
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	104, 202, 278
Sau3AI	GATC	5 cut(s)	21, 171, 259, 313, 318
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	72, 98
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	7 cut(s)	18, 63, 164, 186, 234, 252, 276
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	176, 185
SmoI	CTYRAG	2 cut(s)	176, 185
Sse9I	AATT	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	70, 96
StyI	CCWWGG	2 cut(s)	78, 253
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	3 cut(s)	18, 63, 276
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	3 cut(s)	103, 201, 277
TspDTI	ATGAA	1 cut(s)	317
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	181
XmnI	GAANNNNTTC	2 cut(s)	155, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.