pycom11g19860

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001356
Physical Location & Seq
Reverse (-)
22395909 .. 22397622
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19860.4

Sequence Viewer

Length: 366 bp
ATGTCTGACATCGATGTACAGCTTCCCACTGCCTTTGGGAATTTCTCTTTCTTGGGTTCAGATCCCTTTGCTGAGGCAACTGCTGAGGACTCTGGTGCTGGGACAAAAGAGTATGTGCACATCCGTGTACAGCAACGCAATGGCAGGACAAGCCTGACTACTGTGCAGGGACTGAAGAAAGAGTTCAGTTACAACAAGATACTCAAAGACCTTAAGAAGGAGTTTTGCTGCAATGGTACCGTTGTCCAGGACCCAGAACTAGGGCAGGTCATTCAACTTCAAGGTGATCAGCGAAAGAATGTATCTTCGTTTCTAGTCCAGGCTGGGATTGTGAAGAAAGACAATATCAAAATTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

122

Amino Acids

13.38

Weight (kDa)

7.76

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 40, 351
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 3 cut(s) 18, 129, 238
AfiI CCNNNNNNNGG 2 cut(s) 217, 260
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 275, 281
AjnI CCWGG 2 cut(s) 246, 318
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 116
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 172
ApaLI GTGCAC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 2 cut(s) 40, 351
Asp700I GAANNNNTTC 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 2 cut(s) 72, 84
BbvI GCAGC 1 cut(s) 215
BciT130I CCWGG 2 cut(s) 248, 320
BclI TGATCA 1 cut(s) 286
BfaI CTAG 2 cut(s) 260, 314
BfrI CTTAAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 248, 320
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 238, 252
BmrFI CCNGG 2 cut(s) 248, 320
Bpu10I CCTNAGC 2 cut(s) 72, 84
Bsa29I ATCGAT 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 260
Bse3DI GCAATG 2 cut(s) 145, 238
BseBI CCWGG 2 cut(s) 248, 320
BseCI ATCGAT 1 cut(s) 12
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 217, 260
BseMI GCAATG 2 cut(s) 145, 238
BseMII CTCAG 2 cut(s) 63, 75
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 2 cut(s) 98, 323
BsgI GTGCAG 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 2 cut(s) 115, 183
BslI CCNNNNNNNGG 2 cut(s) 217, 260
BsmFI GGGAC 2 cut(s) 115, 183
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 2 cut(s) 16, 127
Bsp143I GATC 2 cut(s) 61, 286
BspCNI CTCAG 2 cut(s) 64, 76
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 238, 252
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 145, 238
BsrGI TGTACA 2 cut(s) 16, 127
BssMI GATC 2 cut(s) 61, 286
Bst2UI CCWGG 2 cut(s) 248, 320
Bst4CI ACNGT 3 cut(s) 163, 241, 359
BstAFI CTTAAG 1 cut(s) 212
BstAUI TGTACA 2 cut(s) 16, 127
BstDEI CTNAG 2 cut(s) 72, 84
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 64, 289
BstMBI GATC 2 cut(s) 61, 286
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 2 cut(s) 248, 320
BstSCI CCNGG 2 cut(s) 246, 318
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 3 cut(s) 17, 128, 237
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviJI RGCY 3 cut(s) 22, 153, 323
CviKI_1 RGCY 3 cut(s) 22, 153, 323
CviQI GTAC 3 cut(s) 17, 128, 237
DdeI CTNAG 2 cut(s) 72, 84
DpnI GATC 2 cut(s) 63, 288
DpnII GATC 2 cut(s) 61, 286
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 246, 318
FaiI YATR 1 cut(s) 114
FaqI GGGAC 2 cut(s) 115, 183
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 2 cut(s) 260, 314
GluI GCNGC 1 cut(s) 229
GsaI CCCAGC 2 cut(s) 102, 327
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 118, 128
Hpy188I TCNGA 3 cut(s) 7, 61, 365
Hpy8I GTNNAC 2 cut(s) 118, 128
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 3 cut(s) 163, 241, 359
HpyCH4V TGCA 3 cut(s) 118, 166, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 72, 84
KpnI GGTACC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 61, 286
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 2 cut(s) 260, 314
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 63, 288
MboI GATC 2 cut(s) 61, 286
MboII GAAGA 3 cut(s) 187, 297, 346
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 40, 351
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 2 cut(s) 67, 79
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 123
MspCI CTTAAG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 248, 320
MvaI CCWGG 2 cut(s) 248, 320
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 2 cut(s) 61, 286
NlaIV GGNNCC 2 cut(s) 238, 252
OliI CACNNNNGTG 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 246, 318
PspFI CCCAGC 2 cut(s) 98, 323
PspGI CCWGG 2 cut(s) 246, 318
PspN4I GGNNCC 2 cut(s) 238, 252
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 3 cut(s) 18, 129, 238
RsaNI GTAC 3 cut(s) 17, 128, 237
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 2 cut(s) 61, 286
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 248, 320
SduI GDGCHC 1 cut(s) 120
SetI ASST 4 cut(s) 24, 213, 270, 286
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 2 cut(s) 40, 351
SspMI CTAG 2 cut(s) 260, 314
StyD4I CCNGG 2 cut(s) 246, 318
TaaI ACNGT 3 cut(s) 163, 241, 359
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 40, 351
TatI WGTACW 2 cut(s) 16, 127
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 2 cut(s) 40, 351
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 260, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.