Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Forward (+)

12775916 .. 12778673

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G205000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGAGCTCGACGTACAGATTCCTACCGCCTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGACAAAAGAGTATGTGCACATTCGTATACAGCAACGGAACGGCAGGAAAAGCCTGACAACCGTGCAGGGATTGAAGAAGGAGTTTAGCTACAACAAGATACTCAAAGACCTTAAGAAGGAATTTTGCTGCAATGGTACAGTTGTCCAGGACCCAGAACTAGGACAGGTCATTCAGCTTCAAGGTGATCAGAGAAAGAATGTGTCTTCCTTCCTCGTCCAGGCTGGCATTGTGAAGAAAGACAACATCAAAATTCATGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

8.56

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	197, 327
AfaI	GTAC	2 cut(s)	18, 214
AfiI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	151, 257
AjnI	CCWGG	2 cut(s)	222, 294
AluBI	AGCT	3 cut(s)	10, 165, 253
AluI	AGCT	3 cut(s)	10, 165, 253
Alw21I	GWGCWC	2 cut(s)	12, 96
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	197, 327
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	12, 96
BbvCI	CCTCAGC	2 cut(s)	48, 60
BbvI	GCAGC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	224, 296
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	236
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	224, 296
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	224, 296
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	2 cut(s)	48, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 236, 295
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	224, 296
BseLI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	39, 51, 81
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	12, 96
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BsmFI	GGGAC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	12, 96
Bsp143I	GATC	2 cut(s)	37, 262
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	3 cut(s)	40, 52, 80
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	214
BssMI	GATC	2 cut(s)	37, 262
BssNAI	GTATAC	1 cut(s)	104
Bst1107I	GTATAC	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	224, 296
Bst4CI	ACNGT	2 cut(s)	139, 217
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	4 cut(s)	6, 48, 60, 67
BstENI	CCTNNNNNAGG	2 cut(s)	191, 293
BstKTI	GATC	2 cut(s)	40, 265
BstMBI	GATC	2 cut(s)	37, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	224, 296
BstSCI	CCNGG	2 cut(s)	222, 294
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	273
BstZ17I	GTATAC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	17, 213
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	5 cut(s)	10, 129, 165, 253, 299
CviKI_1	RGCY	5 cut(s)	10, 129, 165, 253, 299
CviQI	GTAC	2 cut(s)	17, 213
DdeI	CTNAG	4 cut(s)	6, 48, 60, 67
DpnI	GATC	2 cut(s)	39, 264
DpnII	GATC	2 cut(s)	37, 262
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	2 cut(s)	191, 293
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	222, 294
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	335
FaiI	YATR	3 cut(s)	90, 104, 333
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	205
GsaI	CCCAGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	2 cut(s)	22, 65
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	94, 104
Hpy188I	TCNGA	3 cut(s)	7, 267, 341
Hpy8I	GTNNAC	2 cut(s)	94, 104
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	148, 187, 295
HpyCH4III	ACNGT	2 cut(s)	139, 217
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	94, 142, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	4 cut(s)	6, 48, 60, 67
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	37, 262
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	15
MalI	GATC	2 cut(s)	39, 264
MboI	GATC	2 cut(s)	37, 262
MboII	GAAGA	3 cut(s)	163, 273, 322
MhlI	GDGCHC	2 cut(s)	12, 96
MluCI	AATT	2 cut(s)	197, 327
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	43, 55, 299
MseI	TTAA	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	224, 296
MvaI	CCWGG	2 cut(s)	224, 296
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	37, 262
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	222, 294
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	222, 294
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	18, 214
RsaNI	GTAC	2 cut(s)	17, 213
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	37, 262
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	224, 296
SduI	GDGCHC	2 cut(s)	12, 96
SetI	ASST	8 cut(s)	12, 18, 73, 167, 189, 246, 255, 262
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	197, 327
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	222, 294
TaaI	ACNGT	2 cut(s)	139, 217
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	197, 327
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	127
Vha464I	CTTAAG	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	2 cut(s)	191, 293
XapI	RAATTY	2 cut(s)	197, 327
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.