Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

13358520 .. 13360286

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G213900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGAACTAGACGTCCAGATCCCAACTGCTTTTGACCCGTTCGCCGAAGCCAAAGACGCGGATGCCCCCGGAGCCAAGGAGTATGTGCATATCCGGGTGCAGCAGAGAAATGGAAAGAAGTGCCTGACAACAGTTCAAGGGCTGAAGAAAGACTTCAGCTACGAGAAGATCCTTAAGGATCTGAAAAAAGAGTTCTGCTGCAACGGCAATGTTGTCCAGGACAAAGAGCTTGGCAAGATAATTCAGCTCCAAGGTGATCAACGCAAGAACGTGCTTCAGTTTCTTGTTCAGGCCAAGATTGTGAAGAAGGAGCAGATAAAGATGCATGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

113

Amino Acids

12.79

Weight (kDa)

9.13

Isoelectric Point (pI)

25.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	3 cut(s)	16, 166, 189
AcuI	CTGAAG	3 cut(s)	142, 167, 263
AcyI	GRCGYC	1 cut(s)	15
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	8, 140
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	3 cut(s)	162, 232, 250
AluI	AGCT	3 cut(s)	162, 232, 250
AlwI	GGATC	3 cut(s)	16, 166, 189
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	103, 201
Asp700I	GAANNNNTTC	1 cut(s)	155
AsuC2I	CCSGG	2 cut(s)	72, 98
AsuHPI	GGTGA	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	115, 188
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	72, 98
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	104, 202
BlsI	GCNGC	2 cut(s)	105, 203
Bme1390I	CCNGG	3 cut(s)	72, 98, 221
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	3 cut(s)	72, 98, 221
BmsI	GCATC	2 cut(s)	55, 315
BpuMI	CCSGG	2 cut(s)	72, 98
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	70, 78, 253
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	70, 78, 253
BseGI	GGATG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	115, 188
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	72, 97
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	21, 171, 181, 259
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	3 cut(s)	16, 166, 189
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	70, 78, 253
BssMI	GATC	4 cut(s)	21, 171, 181, 259
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	78, 253
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	4 cut(s)	24, 174, 184, 262
BstMBI	GATC	4 cut(s)	21, 171, 181, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 74, 207
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	70, 96, 219
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	115, 188
BstX2I	RGATCY	3 cut(s)	21, 171, 181
BstYI	RGATCY	3 cut(s)	21, 171, 181
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	70
CseI	GACGC	1 cut(s)	68
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	7 cut(s)	53, 77, 145, 162, 232, 250, 296
CviKI_1	RGCY	7 cut(s)	53, 77, 145, 162, 232, 250, 296
DpnI	GATC	4 cut(s)	23, 173, 183, 261
DpnII	GATC	4 cut(s)	21, 171, 181, 259
Eco130I	CCWWGG	2 cut(s)	78, 253
Eco57I	CTGAAG	3 cut(s)	142, 167, 263
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	78, 253
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	78, 253
FaeI	CATG	1 cut(s)	332
FaiI	YATR	3 cut(s)	87, 93, 330
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	104, 202
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	104, 202
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	104, 202
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	72, 97
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	332
HpaII	CCGG	2 cut(s)	72, 97
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	15, 273
HpyCH4V	TGCA	4 cut(s)	91, 103, 204, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 74, 207
HpySE526I	ACGT	2 cut(s)	15, 273
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	21, 171, 181, 259
LmnI	GCTCC	3 cut(s)	74, 255, 313
LpnPI	CCDG	7 cut(s)	32, 85, 110, 140, 206, 233, 278
Lsp1109I	GCAGC	2 cut(s)	115, 188
LweI	GCATC	2 cut(s)	55, 315
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	15, 273
MalI	GATC	4 cut(s)	23, 173, 183, 261
MboI	GATC	4 cut(s)	21, 171, 181, 259
MboII	GAAGA	3 cut(s)	160, 181, 319
MflI	RGATCY	3 cut(s)	21, 171, 181
MluCI	AATT	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	72, 97
MspR9I	CCNGG	3 cut(s)	72, 98, 221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	59, 74, 207
NciI	CCSGG	2 cut(s)	72, 98
NdeII	GATC	4 cut(s)	21, 171, 181, 259
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	105, 203
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	3 cut(s)	21, 171, 181
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	104, 202
Sau3AI	GATC	4 cut(s)	21, 171, 181, 259
ScrFI	CCNGG	3 cut(s)	72, 98, 221
SetI	ASST	6 cut(s)	18, 164, 234, 252, 259, 276
SfaNI	GCATC	2 cut(s)	55, 315
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	70, 96, 219
StyI	CCWWGG	2 cut(s)	78, 253
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	18, 276
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	2 cut(s)	103, 201
Vha464I	CTTAAG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.