RLG00000033807

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001356
Physical Location & Seq
Forward (+)
32445375 .. 32447148
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033807

Sequence Viewer

Length: 342 bp
ATGTCTGAGCTCGACGTCCAGATTCCTACTGCCTTCGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGACAAAAGAGTATGTGCACATCCGTGTACAGCAACGGAACGGCAGAAAAAGCCTGACAACTGTGCAGGGACTGAAGAAGGATTTTAGCTACAACAAGATACTCAAGGACCTTAAGAAGGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCCGAACTAGGGCAGGTCATTCAACTTCAAGGTGATCAGCGAAAGAATGTATCTTCCTTCCTAGTCCAGGCTGGCATCGTGAAGAAAGACAACATCAAGATTCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

114

Amino Acids

12.61

Weight (kDa)

8.56

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 6e-27 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 105, 214
AfiI CCNNNNNNNGG 4 cut(s) 193, 236, 237, 295
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 251, 257
AjnI CCWGG 2 cut(s) 222, 294
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 2 cut(s) 10, 165
AluI AGCT 2 cut(s) 10, 165
Alw21I GWGCWC 2 cut(s) 12, 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 2 cut(s) 74, 148
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 184, 226
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 2 cut(s) 184, 226
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 12, 96
BbvCI CCTCAGC 2 cut(s) 48, 60
BbvI GCAGC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 2 cut(s) 224, 296
BclI TGATCA 1 cut(s) 262
BfaI CTAG 2 cut(s) 236, 290
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 224, 296
Bme18I GGWCC 2 cut(s) 184, 226
BmgT120I GGNCC 2 cut(s) 184, 226
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 224, 296
BmsI GCATC 1 cut(s) 312
Bpu10I CCTNAGC 2 cut(s) 48, 60
BpuEI CTTGAG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 236, 237, 295
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 224, 296
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 4 cut(s) 193, 236, 237, 295
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 39, 51, 81
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 191
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 12, 96
BslFI GGGAC 2 cut(s) 91, 159
BslI CCNNNNNNNGG 4 cut(s) 193, 236, 237, 295
BsmFI GGGAC 2 cut(s) 91, 159
Bsp1286I GDGCHC 2 cut(s) 12, 96
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 37, 262
BspCNI CTCAG 3 cut(s) 40, 52, 80
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 103
BssMI GATC 2 cut(s) 37, 262
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 224, 296
Bst4CI ACNGT 2 cut(s) 139, 217
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 6, 48, 60, 67
BstENI CCTNNNNNAGG 2 cut(s) 191, 293
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 2 cut(s) 40, 265
BstMBI GATC 2 cut(s) 37, 262
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 224, 296
BstSCI CCNGG 2 cut(s) 222, 294
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 2 cut(s) 74, 148
Cfr13I GGNCC 2 cut(s) 184, 226
Csp6I GTAC 2 cut(s) 104, 213
CviAII CATG 1 cut(s) 332
CviJI RGCY 4 cut(s) 10, 129, 165, 299
CviKI_1 RGCY 4 cut(s) 10, 129, 165, 299
CviQI GTAC 2 cut(s) 104, 213
DdeI CTNAG 4 cut(s) 6, 48, 60, 67
DpnI GATC 2 cut(s) 39, 264
DpnII GATC 2 cut(s) 37, 262
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 184, 226
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 10
EcoNI CCTNNNNNAGG 2 cut(s) 191, 293
EcoO109I RGGNCCY 2 cut(s) 184, 226
EcoRII CCWGG 2 cut(s) 222, 294
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 1 cut(s) 335
FaiI YATR 2 cut(s) 90, 333
FaqI GGGAC 2 cut(s) 91, 159
FatI CATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 236, 290
GluI GCNGC 1 cut(s) 205
GsaI CCCAGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 335
HinfI GANTC 3 cut(s) 22, 65, 328
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 19, 307, 325
Hpy8I GTNNAC 2 cut(s) 94, 104
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 43, 148, 187, 295
HpyCH4III ACNGT 2 cut(s) 139, 217
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 94, 142, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 4 cut(s) 6, 48, 60, 67
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 37, 262
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 236, 290
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 39, 264
MboI GATC 2 cut(s) 37, 262
MboII GAAGA 3 cut(s) 163, 273, 322
MhlI GDGCHC 2 cut(s) 12, 96
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 43, 55
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 224, 296
MvaI CCWGG 2 cut(s) 224, 296
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 37, 262
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 228
OliI CACNNNNGTG 1 cut(s) 99
PfeI GAWTC 2 cut(s) 22, 328
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 2 cut(s) 184, 226
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 2 cut(s) 184, 226
Psp6I CCWGG 2 cut(s) 222, 294
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 222, 294
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 184, 226
PspPPI RGGWCCY 2 cut(s) 184, 226
PstNI CAGNNNCTG 2 cut(s) 74, 148
RsaI GTAC 2 cut(s) 105, 214
RsaNI GTAC 2 cut(s) 104, 213
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 37, 262
Sau96I GGNCC 2 cut(s) 184, 226
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 224, 296
SduI GDGCHC 2 cut(s) 12, 96
SetI ASST 7 cut(s) 12, 18, 73, 167, 189, 246, 262
SfaNI GCATC 1 cut(s) 312
SinI GGWCC 2 cut(s) 184, 226
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 179, 188
SmoI CTYRAG 2 cut(s) 179, 188
SspMI CTAG 2 cut(s) 236, 290
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 222, 294
TaaI ACNGT 2 cut(s) 139, 217
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 12, 36
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 2 cut(s) 22, 328
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 2 cut(s) 89, 127
Vha464I CTTAAG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 184, 226
XagI CCTNNNNNAGG 2 cut(s) 191, 293
XspI CTAG 2 cut(s) 236, 290
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.