Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

28941125 .. 28944079

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1210300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGACATCGACGTACAGCTTCCCACTGCCTTTGATCCCTTTGCCGAGGCAACTGCTGAGGACTCGGGTGCTGGGACAAAAGAGTATGTACACATCCGTGTACAGCAACGCAATGGCAGGAAAAGCCTGACTACTGTGCAGGGATTGAAGAAAGAGTTTAGCTATAACAAGATACTCAAAGACCTTAAGAAGGAATTTTGCTGCAATGGTACCGTTGTCCAGGACCCAGAACTAGGACAGGTCATTCAGCTTCAAGGTGATCAGCGAAAGAACGTATCTACCTTTCTAGTCCAGGCTGGGATTGTGAAGAAAGACAATATCAAAATTCACGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

114

Amino Acids

12.61

Weight (kDa)

8.56

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	28 - 102	6.2e-27	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	197, 327
AfaI	GTAC	4 cut(s)	18, 93, 105, 214
AfiI	CCNNNNNNNGG	2 cut(s)	193, 236
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	151, 257
AjnI	CCWGG	2 cut(s)	222, 294
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	22, 165, 253
AluI	AGCT	3 cut(s)	22, 165, 253
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	197, 327
Asp718I	GGTACC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	224, 296
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	2 cut(s)	236, 290
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	224, 296
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	214, 228
BmrFI	CCNGG	2 cut(s)	224, 296
Bpu10I	CCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 236
Bse3DI	GCAATG	2 cut(s)	121, 214
BseBI	CCWGG	2 cut(s)	224, 296
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	193, 236
BseMI	GCAATG	2 cut(s)	121, 214
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	2 cut(s)	74, 299
BsgI	GTGCAG	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	193, 236
BsmFI	GGGAC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	67
Bsp1407I	TGTACA	2 cut(s)	91, 103
Bsp143I	GATC	2 cut(s)	37, 262
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	214, 228
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	121, 214
BsrGI	TGTACA	2 cut(s)	91, 103
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	37, 262
Bst2UI	CCWGG	2 cut(s)	224, 296
Bst4CI	ACNGT	3 cut(s)	139, 217, 335
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	2 cut(s)	91, 103
BstDEI	CTNAG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	40, 265
BstMBI	GATC	2 cut(s)	37, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	224, 296
BstSCI	CCNGG	2 cut(s)	222, 294
BstV1I	GCAGC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	4 cut(s)	17, 92, 104, 213
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviJI	RGCY	5 cut(s)	22, 129, 165, 253, 299
CviKI_1	RGCY	5 cut(s)	22, 129, 165, 253, 299
CviQI	GTAC	4 cut(s)	17, 92, 104, 213
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	39, 264
DpnII	GATC	2 cut(s)	37, 262
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	222, 294
FaiI	YATR	2 cut(s)	90, 168
FaqI	GGGAC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	2 cut(s)	236, 290
GluI	GCNGC	1 cut(s)	205
GsaI	CCCAGC	2 cut(s)	78, 303
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	94, 104
Hpy188I	TCNGA	2 cut(s)	7, 341
Hpy8I	GTNNAC	2 cut(s)	94, 104
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	3 cut(s)	139, 217, 335
HpyCH4IV	ACGT	2 cut(s)	15, 276
HpyCH4V	TGCA	2 cut(s)	142, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	2 cut(s)	15, 276
KpnI	GGTACC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	37, 262
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	236, 290
MaeII	ACGT	2 cut(s)	15, 276
MalI	GATC	2 cut(s)	39, 264
MboI	GATC	2 cut(s)	37, 262
MboII	GAAGA	2 cut(s)	163, 322
MluCI	AATT	2 cut(s)	197, 327
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	43, 55
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	224, 296
MvaI	CCWGG	2 cut(s)	224, 296
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	37, 262
NlaIV	GGNNCC	2 cut(s)	214, 228
NmeAIII	GCCGAG	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	222, 294
PspFI	CCCAGC	2 cut(s)	74, 299
PspGI	CCWGG	2 cut(s)	222, 294
PspN4I	GGNNCC	2 cut(s)	214, 228
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	4 cut(s)	18, 93, 105, 214
RsaNI	GTAC	4 cut(s)	17, 92, 104, 213
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	37, 262
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	224, 296
SetI	ASST	9 cut(s)	18, 24, 167, 189, 246, 255, 262, 279, 287
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	197, 327
SspMI	CTAG	2 cut(s)	236, 290
StyD4I	CCNGG	2 cut(s)	222, 294
TaaI	ACNGT	3 cut(s)	139, 217, 335
TaiI	ACGT	2 cut(s)	18, 279
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	197, 327
TatI	WGTACW	2 cut(s)	91, 103
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	2 cut(s)	197, 327
XspI	CTAG	2 cut(s)	236, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.