Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

5772819 .. 5774816

Gene Structure 1998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1071700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGAGCTCGACGTACAAATTCCTACTGCCTTCGATCCGTTTGCTGAGGCAAATGCTGAGGATTCAGGTGCTGGGACAAAAGATTATGTACACATTCGTGTCCAACAAAGAAACGGTAGGAAAAGCCTGACAACCGTGCAGGGACTGAAGAAGGAATTTAGCTACAACAAAATCCTCAAAGACCTTAAGAAGGAATTTTGTTGCAATGGTACAGTTGTCCAGGATCCAGAGCAAGGGCAGGTTATTCAACTTCAAGGTGATCAACGAAAGAACGTATCTGCCTTCCTAGTCCAGGCTGGCATTGTGAAGAAGGATCACATCAAGATTCACGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

8.57

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	28 - 102	3.6e-27	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AclWI	GGATC	4 cut(s)	32, 221, 234, 324
AcsI	RAATTY	3 cut(s)	21, 158, 197
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	18, 93, 214
AfiI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	251, 257
AjnI	CCWGG	2 cut(s)	222, 294
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	10, 165
AluI	AGCT	2 cut(s)	10, 165
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	4 cut(s)	32, 221, 234, 324
AlwNI	CAGNNNCTG	2 cut(s)	74, 148
ApoI	RAATTY	3 cut(s)	21, 158, 197
AsuHPI	GGTGA	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BamHI	GGATCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvCI	CCTCAGC	2 cut(s)	48, 60
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	2 cut(s)	224, 296
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	224, 296
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	224, 296
Bpu10I	CCTNAGC	2 cut(s)	48, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 236, 295
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	224, 296
BseLI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	39, 51
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	91, 159
BslI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BsmFI	GGGAC	2 cut(s)	91, 159
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	37, 226, 262, 316
BspCNI	CTCAG	2 cut(s)	40, 52
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	4 cut(s)	32, 221, 234, 324
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	91
BssMI	GATC	4 cut(s)	37, 226, 262, 316
Bst2UI	CCWGG	2 cut(s)	224, 296
Bst4CI	ACNGT	4 cut(s)	119, 139, 217, 335
BstAFI	CTTAAG	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	6, 48, 60
BstENI	CCTNNNNNAGG	2 cut(s)	191, 293
BstKTI	GATC	4 cut(s)	40, 229, 265, 319
BstMBI	GATC	4 cut(s)	37, 226, 262, 316
BstNI	CCWGG	2 cut(s)	224, 296
BstSCI	CCNGG	2 cut(s)	222, 294
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	2 cut(s)	74, 148
Csp6I	GTAC	3 cut(s)	17, 92, 213
CviJI	RGCY	4 cut(s)	10, 129, 165, 299
CviKI_1	RGCY	4 cut(s)	10, 129, 165, 299
CviQI	GTAC	3 cut(s)	17, 92, 213
DdeI	CTNAG	3 cut(s)	6, 48, 60
DpnI	GATC	4 cut(s)	39, 228, 264, 318
DpnII	GATC	4 cut(s)	37, 226, 262, 316
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	2 cut(s)	191, 293
EcoRII	CCWGG	2 cut(s)	222, 294
EcoT38I	GRGCYC	1 cut(s)	12
FaiI	YATR	1 cut(s)	90
FaqI	GGGAC	2 cut(s)	91, 159
FbaI	TGATCA	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	290
GsaI	CCCAGC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	65, 328
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	7, 341
Hpy188III	TCNNGA	2 cut(s)	230, 325
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	5 cut(s)	43, 148, 187, 295, 307
HpyCH4III	ACNGT	4 cut(s)	119, 139, 217, 335
HpyCH4IV	ACGT	2 cut(s)	15, 276
HpyCH4V	TGCA	2 cut(s)	142, 207
HpyF3I	CTNAG	3 cut(s)	6, 48, 60
HpySE526I	ACGT	2 cut(s)	15, 276
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	37, 226, 262, 316
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	2 cut(s)	15, 276
MalI	GATC	4 cut(s)	39, 228, 264, 318
MboI	GATC	4 cut(s)	37, 226, 262, 316
MboII	GAAGA	2 cut(s)	163, 322
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	21, 158, 197
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	43, 55, 188
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	224, 296
MvaI	CCWGG	2 cut(s)	224, 296
NdeII	GATC	4 cut(s)	37, 226, 262, 316
NlaIV	GGNNCC	1 cut(s)	228
OliI	CACNNNNGTG	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	65, 328
PfoI	TCCNGGA	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	222, 294
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	222, 294
PspN4I	GGNNCC	1 cut(s)	228
PstNI	CAGNNNCTG	2 cut(s)	74, 148
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	18, 93, 214
RsaNI	GTAC	3 cut(s)	17, 92, 213
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	4 cut(s)	37, 226, 262, 316
ScrFI	CCNGG	2 cut(s)	224, 296
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	8 cut(s)	12, 18, 73, 167, 189, 246, 262, 279
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	21, 158, 197
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	222, 294
TaaI	ACNGT	4 cut(s)	119, 139, 217, 335
TaiI	ACGT	2 cut(s)	18, 279
TaqI	TCGA	2 cut(s)	12, 36
TasI	AATT	3 cut(s)	21, 158, 197
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	65, 328
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	30
Vha464I	CTTAAG	1 cut(s)	188
XagI	CCTNNNNNAGG	2 cut(s)	191, 293
XapI	RAATTY	3 cut(s)	21, 158, 197
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.