Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

22307982 .. 22309453

Gene Structure 1472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGAGCTAGACATTCAGATTCCATCAGCATACGATCCATTTGCAGAAGCTAAAGATTCAGATGCACCAGGAGCTAAAGAGAACATTCACATTCGAATCCAGCAGAGGAATGGGAAAAAGAGCTTGACGACTGTTCAAGGGCTTAAGAAAGAGTACAGCTACGAGAGGATTCTCAAGGATTTGAAGAAAGATTTCTGCTGCAACGGTAACGTTGTGCAGGACAAAGAACTAGGCAAGATCATCCAGCTTCAAGGTGATCAAAGGAAGAAAGTGTCTCAGTTCTTGGTCCAAACTGGGATTGCTAAGAAGGATCAGATCAAGATCCACGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

9.23

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	27 - 101	3.8e-25	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	3 cut(s)	32, 319, 321
AfaI	GTAC	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	140, 187, 254
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	6 cut(s)	10, 53, 77, 126, 162, 250
AluI	AGCT	6 cut(s)	10, 53, 77, 126, 162, 250
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	32, 319, 321
ApeKI	GCWGC	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	11, 233
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	97
Bsp143I	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
BspCNI	CTCAG	1 cut(s)	292
BspPI	GGATC	3 cut(s)	32, 319, 321
BspT104I	TTCGAA	1 cut(s)	97
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	136, 209, 332
BstAFI	CTTAAG	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	279, 306
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	6 cut(s)	40, 243, 262, 316, 321, 327
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	7 cut(s)	10, 53, 77, 126, 145, 162, 250
CviKI_1	RGCY	7 cut(s)	10, 53, 77, 126, 145, 162, 250
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	279, 306
DpnI	GATC	6 cut(s)	39, 242, 261, 315, 320, 326
DpnII	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
Eco47I	GGWCC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	70
FaiI	YATR	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	2 cut(s)	11, 233
GluI	GCNGC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	22, 59, 99, 172
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	21, 64, 318
Hpy188III	TCNNGA	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	136, 209, 332
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	47, 68, 204, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	279, 306
HpySE526I	ACGT	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	6 cut(s)	57, 84, 116, 206, 260, 282
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	11, 233
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	6 cut(s)	39, 242, 261, 315, 320, 326
MboI	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
MboII	GAAGA	2 cut(s)	199, 280
MflI	RGATCY	1 cut(s)	324
MnlI	CCTC	2 cut(s)	102, 162
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
NspV	TTCGAA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	22, 59, 99, 172
PkrI	GCNGC	1 cut(s)	203
Psp1406I	AACGTT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	6 cut(s)	37, 240, 259, 313, 318, 324
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	8 cut(s)	12, 55, 79, 128, 164, 216, 252, 259
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	1 cut(s)	289
SmlI	CTYRAG	2 cut(s)	146, 176
SmoI	CTYRAG	2 cut(s)	146, 176
SspMI	CTAG	2 cut(s)	11, 233
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	3 cut(s)	136, 209, 332
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	97
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	4 cut(s)	22, 59, 99, 172
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	1 cut(s)	201
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	2 cut(s)	11, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.