FvH4_6g45690

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001356
Physical Location & Seq
Forward (+)
35010689 .. 35012381
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45690.t1

Sequence Viewer

Length: 342 bp
ATGTCTGAGCTCGACGTCCAGATCCCTACTGCCTTTGATCCGTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGAACAAAAGATTATGTGCACATTCGTATACAGCAGCGTAATGGTAGGAAAAGCCTGACAACAGTGCAGGGACTGAAGAAGGAATTTAGCTACAACAAGATTCTCAAGGATCTTAAGAAGGAATTTTGCTGCAATGGTACAGTTGTCCAGGACCCAGAACAGGGGCAGGTGATTCAACTCCAAGGTGATCAGCGGAAGAACGTGTCTGCCTTCCTAGTTCAGGCTGGCATTGTGAAGAAGGAGAATATCAAAATTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

8.56

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 3.6e-27 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 103
AciI CCGC 1 cut(s) 268
AclWI GGATC 3 cut(s) 16, 32, 192
AcsI RAATTY 3 cut(s) 158, 197, 327
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 235, 236, 295
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 10, 165
AluI AGCT 2 cut(s) 10, 165
Alw21I GWGCWC 2 cut(s) 12, 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 3 cut(s) 16, 32, 192
AlwNI CAGNNNCTG 2 cut(s) 74, 148
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 109, 204
ApoI RAATTY 3 cut(s) 158, 197, 327
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 256, 272
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 12, 96
BbvCI CCTCAGC 2 cut(s) 48, 60
BbvI GCAGC 2 cut(s) 121, 191
BciT130I CCWGG 1 cut(s) 224
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 2 cut(s) 110, 205
BlsI GCNGC 2 cut(s) 111, 206
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 224
Bpu10I CCTNAGC 2 cut(s) 48, 60
BpuEI CTTGAG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 236, 295
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 235, 236, 295
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 39, 51, 81
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 121, 191
BsgI GTGCAG 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 12, 96
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 235, 236, 295
BsmFI GGGAC 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 12, 96
Bsp143I GATC 4 cut(s) 21, 37, 184, 262
BspACI CCGC 1 cut(s) 268
BspCNI CTCAG 3 cut(s) 40, 52, 80
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 3 cut(s) 16, 32, 192
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 21, 37, 184, 262
BssNAI GTATAC 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 139, 217, 335
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 6, 48, 60, 67
BstENI CCTNNNNNAGG 1 cut(s) 293
BstKTI GATC 4 cut(s) 24, 40, 187, 265
BstMBI GATC 4 cut(s) 21, 37, 184, 262
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 121, 191
BstX2I RGATCY 2 cut(s) 21, 184
BstYI RGATCY 2 cut(s) 21, 184
BstZ17I GTATAC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 2 cut(s) 74, 148
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 213
CviJI RGCY 4 cut(s) 10, 129, 165, 299
CviKI_1 RGCY 4 cut(s) 10, 129, 165, 299
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 4 cut(s) 6, 48, 60, 67
DpnI GATC 4 cut(s) 23, 39, 186, 264
DpnII GATC 4 cut(s) 21, 37, 184, 262
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 256
FaiI YATR 2 cut(s) 90, 104
FaqI GGGAC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 110, 205
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 110, 205
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 110, 205
Hin1I GRCGYC 1 cut(s) 15
HinfI GANTC 3 cut(s) 65, 175, 247
HphI GGTGA 2 cut(s) 256, 272
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 2 cut(s) 7, 341
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 94, 104
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 148, 187, 295, 307
HpyCH4III ACNGT 3 cut(s) 139, 217, 335
HpyCH4IV ACGT 2 cut(s) 15, 276
HpyCH4V TGCA 3 cut(s) 94, 142, 207
HpyF3I CTNAG 4 cut(s) 6, 48, 60, 67
HpySE526I ACGT 2 cut(s) 15, 276
Hsp92I GRCGYC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 21, 37, 184, 262
Lsp1109I GCAGC 2 cut(s) 121, 191
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 15, 276
MalI GATC 4 cut(s) 23, 39, 186, 264
MboI GATC 4 cut(s) 21, 37, 184, 262
MboII GAAGA 3 cut(s) 163, 283, 322
MflI RGATCY 2 cut(s) 21, 184
MhlI GDGCHC 2 cut(s) 12, 96
MluCI AATT 3 cut(s) 158, 197, 327
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 43, 55
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 268
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
NdeII GATC 4 cut(s) 21, 37, 184, 262
NlaIV GGNNCC 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 175, 247
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 111, 206
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 2 cut(s) 74, 148
PsuI RGATCY 2 cut(s) 21, 184
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 110, 205
Sau3AI GATC 4 cut(s) 21, 37, 184, 262
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 12, 96
SetI ASST 7 cut(s) 12, 18, 73, 167, 246, 262, 279
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 179, 188
SmoI CTYRAG 2 cut(s) 179, 188
Sse9I AATT 3 cut(s) 158, 197, 327
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 3 cut(s) 139, 217, 335
TaiI ACGT 2 cut(s) 18, 279
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 158, 197, 327
TfiI GAWTC 2 cut(s) 175, 247
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 144
TseI GCWGC 2 cut(s) 109, 204
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 3 cut(s) 158, 197, 327
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.