Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

15738191 .. 15739595

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

CCCGGAGGCTCTGGAGATTTCTCAAACCAAATCGTTGTCGTTGTATCGAAGCTGCTTGTTCTTCGGGTAAGGTTTCAGAAAGCAAAGCCTTACCCCCGAGTTAGGCTTCCTTTGTACGTGTACGTCAAGAGATCTTTCAAGCAAAGCACATATATGGTTGAATTAGACGTTGTGATCACAACTGCTTTTGATCCATTTGCGGAAGCGAGAGACGCAGATGCACCGGGGGCCAAGGAGTATGTGCATATCCGCGTGCAGCAAAGGAATGGGAAGAAGTGCCTGACGACAGTTCAGGGGCTGAAGAAAGACTTCAGCTACGAGAAGATACTCAAGGACCTCAAGAAAGAGTTCTGCTGCAACGGCAATGTGGTTCAGGACAAAGAGCTCGGCAAGATAATCCAGCTCCAAGGCGATCAGCGCAAGAACGTCCTCCAGTTTCTTATTCAGGCAAGGATTGTTAAGAAGGAGCAGATCAAGATTCATGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

164

Amino Acids

18.69

Weight (kDa)

9.82

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	78 - 150	1.6e-24	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	252
AciI	CCGC	2 cut(s)	200, 250
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	295, 320
AfaI	GTAC	2 cut(s)	116, 122
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	139, 161
AluBI	AGCT	4 cut(s)	52, 315, 385, 403
AluI	AGCT	4 cut(s)	52, 315, 385, 403
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	52, 256, 354
Asp700I	GAANNNNTTC	2 cut(s)	308, 347
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	228, 334
AsuC2I	CCSGG	2 cut(s)	3, 225
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	39, 268, 341
BceAI	ACGGC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	3, 225
BcoDI	GTCTC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	3 cut(s)	53, 257, 355
BlsI	GCNGC	3 cut(s)	54, 258, 356
Bme1390I	CCNGG	2 cut(s)	3, 225
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	228, 334
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	3, 225
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	2 cut(s)	33, 416
BpuEI	CTTGAG	2 cut(s)	314, 323
BpuMI	CCSGG	2 cut(s)	3, 225
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	224, 231, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	370
BseDI	CCNNGG	3 cut(s)	224, 231, 406
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	3 cut(s)	39, 268, 341
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	3, 224
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	5 cut(s)	131, 174, 190, 412, 471
BspACI	CCGC	2 cut(s)	200, 250
BspANI	GGCC	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	224, 231, 406
BssMI	GATC	5 cut(s)	131, 174, 190, 412, 471
BssT1I	CCWWGG	2 cut(s)	231, 406
Bst4CI	ACNGT	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	5 cut(s)	134, 177, 193, 415, 474
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	5 cut(s)	131, 174, 190, 412, 471
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 227, 360, 417
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	39, 268, 341
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	228, 334
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	115, 121
CviAII	CATG	1 cut(s)	482
CviJI	RGCY	9 cut(s)	9, 52, 88, 106, 230, 298, 315, 385, 403
CviKI_1	RGCY	9 cut(s)	9, 52, 88, 106, 230, 298, 315, 385, 403
CviQI	GTAC	2 cut(s)	115, 121
DpnI	GATC	5 cut(s)	133, 176, 192, 414, 473
DpnII	GATC	5 cut(s)	131, 174, 190, 412, 471
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	231, 406
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	295, 320
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	231, 406
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	231, 406
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	1 cut(s)	485
FaiI	YATR	6 cut(s)	151, 153, 155, 240, 246, 483
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	53, 257, 355
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	3 cut(s)	53, 257, 355
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	3 cut(s)	53, 257, 355
GsuI	CTGGAG	2 cut(s)	33, 416
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	2 cut(s)	3, 224
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	3, 224
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	5 cut(s)	12, 127, 340, 374, 475
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	4 cut(s)	117, 123, 168, 426
HpyCH4V	TGCA	4 cut(s)	221, 244, 256, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 227, 360, 417
HpySE526I	ACGT	4 cut(s)	117, 123, 168, 426
Hsp92II	CATG	1 cut(s)	485
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	5 cut(s)	131, 174, 190, 412, 471
LmnI	GCTCC	2 cut(s)	408, 466
LpnPI	CCDG	8 cut(s)	16, 237, 278, 293, 359, 413, 431, 446
Lsp1109I	GCAGC	3 cut(s)	39, 268, 341
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	4 cut(s)	117, 123, 168, 426
MalI	GATC	5 cut(s)	133, 176, 192, 414, 473
MboI	GATC	5 cut(s)	131, 174, 190, 412, 471
MboII	GAAGA	4 cut(s)	53, 283, 313, 334
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	2 cut(s)	347, 440
MroXI	GAANNNNTTC	2 cut(s)	308, 347
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	3, 224
MspR9I	CCNGG	2 cut(s)	3, 225
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	4 cut(s)	212, 227, 360, 417
NciI	CCSGG	2 cut(s)	3, 225
NdeII	GATC	5 cut(s)	131, 174, 190, 412, 471
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	1 cut(s)	366
PdmI	GAANNNNTTC	2 cut(s)	308, 347
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	3 cut(s)	54, 258, 356
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	228, 334
PspPPI	RGGWCCY	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	2 cut(s)	116, 122
RsaNI	GTAC	2 cut(s)	115, 121
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	3 cut(s)	53, 257, 355
Sau3AI	GATC	5 cut(s)	131, 174, 190, 412, 471
Sau96I	GGNCC	2 cut(s)	228, 334
ScrFI	CCNGG	2 cut(s)	3, 225
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	329, 338
SmoI	CTYRAG	2 cut(s)	329, 338
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	2 cut(s)	200, 250
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	2 cut(s)	231, 406
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	4 cut(s)	120, 126, 171, 429
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseI	GCWGC	3 cut(s)	52, 256, 354
TspDTI	ATGAA	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	334
XmnI	GAANNNNTTC	2 cut(s)	308, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.