Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

34342723 .. 34345058

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG280400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGAGTTAGACGTTGTGATCCCAACTGCTTTTGACCCATTTGCGGAAGCGAGAGACGCAGATGCCCCGGGGGCCAAGGAGTATGTGCATATCCGTGTGCAGCAAAGGAATGGGAAGAAGTGCCTGACAACAGTTCAAGGGCTGAAGAAGGACTTCAGCTACGAGAAGATACTCAAGGATCTCAAGAAAGAGTTCTGCTGCAACGGCAATGTGGTTCAGGACAAAGAGCTCGGCAAGATAATCCAGCTCCAAGGCGATCAGCGCAAGAACGTGCTCCAGTTTCTTGTTCAGGCAAGAATTGTCAAGAAGGAGCAGATCAAGATTCATGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

112

Amino Acids

12.8

Weight (kDa)

9.17

Isoelectric Point (pI)

18.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	27 - 100	2.5e-24	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	16, 189
AcuI	CTGAAG	2 cut(s)	142, 167
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	3 cut(s)	162, 232, 250
AluI	AGCT	3 cut(s)	162, 232, 250
Alw21I	GWGCWC	2 cut(s)	234, 279
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	16, 189
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	103, 201
Asp700I	GAANNNNTTC	2 cut(s)	155, 194
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	2 cut(s)	71, 72
AvaI	CYCGRG	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	234, 279
BbvI	GCAGC	2 cut(s)	115, 188
BceAI	ACGGC	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	71, 72
BcoDI	GTCTC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	104, 202
BlsI	GCNGC	2 cut(s)	105, 203
Bme1390I	CCNGG	2 cut(s)	71, 72
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	71, 72
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	161, 170
BpuMI	CCSGG	2 cut(s)	71, 72
BsaJI	CCNNGG	5 cut(s)	69, 70, 71, 78, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	217
BseDI	CCNNGG	5 cut(s)	69, 70, 71, 78, 253
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	115, 188
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	234, 279
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	234, 279
Bsp143I	GATC	4 cut(s)	21, 181, 259, 318
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	16, 189
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	5 cut(s)	69, 70, 71, 78, 253
BssMI	GATC	4 cut(s)	21, 181, 259, 318
BssT1I	CCWWGG	2 cut(s)	78, 253
Bst4CI	ACNGT	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	4 cut(s)	24, 184, 262, 321
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	21, 181, 259, 318
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 74, 207, 264
BstSCI	CCNGG	2 cut(s)	69, 70
BstV1I	GCAGC	2 cut(s)	115, 188
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	75
Cfr9I	CCCGGG	1 cut(s)	70
CseI	GACGC	1 cut(s)	68
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	5 cut(s)	77, 145, 162, 232, 250
CviKI_1	RGCY	5 cut(s)	77, 145, 162, 232, 250
DpnI	GATC	4 cut(s)	23, 183, 261, 320
DpnII	GATC	4 cut(s)	21, 181, 259, 318
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	78, 253
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	142, 167
Eco88I	CYCGRG	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	78, 253
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	78, 253
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	332
FaiI	YATR	3 cut(s)	87, 93, 330
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	104, 202
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	104, 202
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	104, 202
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	71
Hpy188III	TCNNGA	4 cut(s)	187, 221, 307, 322
HpyAV	CCTTC	2 cut(s)	145, 304
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	15, 273
HpyCH4V	TGCA	3 cut(s)	91, 103, 204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 74, 207, 264
HpySE526I	ACGT	2 cut(s)	15, 273
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	21, 181, 259, 318
LmnI	GCTCC	3 cut(s)	255, 282, 313
LpnPI	CCDG	6 cut(s)	84, 140, 206, 260, 278, 293
Lsp1109I	GCAGC	2 cut(s)	115, 188
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	2 cut(s)	15, 273
MalI	GATC	4 cut(s)	23, 183, 261, 320
MboI	GATC	4 cut(s)	21, 181, 259, 318
MboII	GAAGA	3 cut(s)	130, 160, 181
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	234, 279
MluCI	AATT	1 cut(s)	300
MroXI	GAANNNNTTC	2 cut(s)	155, 194
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	71, 72
MwoI	GCNNNNNNNGC	4 cut(s)	59, 74, 207, 264
NciI	CCSGG	2 cut(s)	71, 72
NdeII	GATC	4 cut(s)	21, 181, 259, 318
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	213
PdmI	GAANNNNTTC	2 cut(s)	155, 194
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	105, 203
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	234
SatI	GCNGC	2 cut(s)	104, 202
Sau3AI	GATC	4 cut(s)	21, 181, 259, 318
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	71, 72
SduI	GDGCHC	2 cut(s)	234, 279
SetI	ASST	5 cut(s)	18, 164, 234, 252, 276
SfaNI	GCATC	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	176, 185
SmoI	CTYRAG	2 cut(s)	176, 185
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	69, 70
StyI	CCWWGG	2 cut(s)	78, 253
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	18, 276
TasI	AATT	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	103, 201
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	86
TspMI	CCCGGG	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	70
XmnI	GAANNNNTTC	2 cut(s)	155, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.