MD11G1224900.v1.1

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001356
Physical Location & Seq
Reverse (-)
32920432 .. 32923190
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1224900.v1.1.491

Sequence Viewer

Length: 342 bp
ATGTCTGACATCGACGTACAGCTTCCCACTGCCTTTGATCCCTTTGCCGAGGCAACTGCTGAGGACTCTGGTGCTGGGACAAAAGAGTATGTGCACATCCGTGTACAGCAACGCAATGGCAGGAAAAGCCTGACTACTGTGCAGGGACTGAAGAAAGAGTTCAGTTACAACAAGATACTCAAAGACCTTAAGAAGGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAACTAGGGCAGGTCATTCAACTTCAAGGTGATCAGCGTAAGAATGTATCTTCGTTTCTAGTCCAGGCTGGGATTGTGAAGAAAGATAATATCAAAATTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

8.56

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 6e-27 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 3 cut(s) 18, 105, 214
AfiI CCNNNNNNNGG 2 cut(s) 193, 236
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 251, 257
AjnI CCWGG 2 cut(s) 222, 294
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 2 cut(s) 224, 296
BclI TGATCA 1 cut(s) 262
BfaI CTAG 2 cut(s) 236, 290
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 224, 296
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 224, 296
Bpu10I CCTNAGC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 236
Bse3DI GCAATG 2 cut(s) 121, 214
BseBI CCWGG 2 cut(s) 224, 296
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 193, 236
BseMI GCAATG 2 cut(s) 121, 214
BseMII CTCAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 191
BseYI CCCAGC 2 cut(s) 74, 299
BsgI GTGCAG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 2 cut(s) 91, 159
BslI CCNNNNNNNGG 2 cut(s) 193, 236
BsmFI GGGAC 2 cut(s) 91, 159
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 37, 262
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 121, 214
BsrGI TGTACA 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 37, 262
Bst2UI CCWGG 2 cut(s) 224, 296
Bst4CI ACNGT 3 cut(s) 139, 217, 335
BstAFI CTTAAG 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 2 cut(s) 40, 265
BstMBI GATC 2 cut(s) 37, 262
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 224, 296
BstSCI CCNGG 2 cut(s) 222, 294
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 17, 104, 213
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviJI RGCY 3 cut(s) 22, 129, 299
CviKI_1 RGCY 3 cut(s) 22, 129, 299
CviQI GTAC 3 cut(s) 17, 104, 213
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 39, 264
DpnII GATC 2 cut(s) 37, 262
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 222, 294
FaiI YATR 1 cut(s) 90
FaqI GGGAC 2 cut(s) 91, 159
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 236, 290
GluI GCNGC 1 cut(s) 205
GsaI CCCAGC 2 cut(s) 78, 303
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 2 cut(s) 7, 341
Hpy8I GTNNAC 2 cut(s) 94, 104
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 139, 217, 335
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 94, 142, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 37, 262
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 2 cut(s) 236, 290
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 39, 264
MboI GATC 2 cut(s) 37, 262
MboII GAAGA 3 cut(s) 163, 273, 322
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 43, 55
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 224, 296
MvaI CCWGG 2 cut(s) 224, 296
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 37, 262
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 222, 294
PspFI CCCAGC 2 cut(s) 74, 299
PspGI CCWGG 2 cut(s) 222, 294
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 148
RsaI GTAC 3 cut(s) 18, 105, 214
RsaNI GTAC 3 cut(s) 17, 104, 213
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 37, 262
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 224, 296
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 18, 24, 189, 246, 262
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 327
SspMI CTAG 2 cut(s) 236, 290
StyD4I CCNGG 2 cut(s) 222, 294
TaaI ACNGT 3 cut(s) 139, 217, 335
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 103
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 236, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.