Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Forward (+)

27403483 .. 27404893

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1200400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTTGAAGAAGACGACGTTCAGATCCCAACTGCTTTTGACCCCTTTGCCGAAGCCAAAGACGCGGATGCCCCCGGAGCCAAGGAGTATGTGCATGTCCGGGTGCAGCAGAGAAATGGAAAGAAGTGCTTGACGACAGTTCAAGGGCTGAAGAAGGACTTCAACTACGACAAGATCCTCAAGGACCTTAAGAAAGAGTTCTGCTGCAACGGGAATGTTGTTCAGGACAAAGAGCTCGGCAAGATAATTCAGCTCCAAGGCGATCAGCGCAAGAAAGTGCTGCAGTTTCTCGTTCAGGCCAAGATTGTCAAGAAGGATCAGATCAAGATTCATGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

8.94

Isoelectric Point (pI)

17.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	28 - 102	9.3e-25	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	19, 169, 324
AcuI	CTGAAG	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	8, 143, 163
AluBI	AGCT	2 cut(s)	235, 253
AluI	AGCT	2 cut(s)	235, 253
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	3 cut(s)	19, 169, 324
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	106, 204, 280
Asp700I	GAANNNNTTC	2 cut(s)	158, 197
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	2 cut(s)	75, 101
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	118, 191, 267
BcnI	CCSGG	2 cut(s)	75, 101
BfmI	CTRYAG	1 cut(s)	281
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	107, 205, 281
BlsI	GCNGC	3 cut(s)	108, 206, 282
Bme1390I	CCNGG	2 cut(s)	75, 101
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	75, 101
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	75, 101
BsaJI	CCNNGG	3 cut(s)	73, 81, 256
BseDI	CCNNGG	3 cut(s)	73, 81, 256
BseGI	GGATG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	118, 191, 267
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	75, 100
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	24, 174, 262, 316, 321
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	3 cut(s)	19, 169, 324
BspTI	CTTAAG	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	73, 81, 256
BssMI	GATC	5 cut(s)	24, 174, 262, 316, 321
BssT1I	CCWWGG	2 cut(s)	81, 256
Bst4CI	ACNGT	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	5 cut(s)	27, 177, 265, 319, 324
BstMBI	GATC	5 cut(s)	24, 174, 262, 316, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 77, 267
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	73, 99
BstSFI	CTRYAG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	118, 191, 267
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	24, 174
BstYI	RGATCY	2 cut(s)	24, 174
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	71
CviAII	CATG	2 cut(s)	95, 332
CviJI	RGCY	7 cut(s)	56, 80, 148, 235, 253, 299, 336
CviKI_1	RGCY	7 cut(s)	56, 80, 148, 235, 253, 299, 336
DpnI	GATC	5 cut(s)	26, 176, 264, 318, 323
DpnII	GATC	5 cut(s)	24, 174, 262, 316, 321
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	81, 256
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	81, 256
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	81, 256
FaeI	CATG	2 cut(s)	98, 335
FaiI	YATR	3 cut(s)	90, 96, 333
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 143, 175
FatI	CATG	2 cut(s)	94, 331
Fnu4HI	GCNGC	3 cut(s)	107, 205, 281
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	107, 205, 281
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	3 cut(s)	107, 205, 281
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	75, 100
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	98, 335
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	75, 100
Hpy188I	TCNGA	3 cut(s)	24, 321, 341
Hpy188III	TCNNGA	3 cut(s)	224, 310, 325
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	148, 307
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	94, 106, 207, 283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 77, 267
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	98, 335
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	24, 174, 262, 316, 321
LmnI	GCTCC	2 cut(s)	77, 258
LpnPI	CCDG	4 cut(s)	88, 113, 209, 281
Lsp1109I	GCAGC	3 cut(s)	118, 191, 267
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	18
MalI	GATC	5 cut(s)	26, 176, 264, 318, 323
MboI	GATC	5 cut(s)	24, 174, 262, 316, 321
MboII	GAAGA	3 cut(s)	20, 23, 163
MflI	RGATCY	2 cut(s)	24, 174
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	246
MnlI	CCTC	1 cut(s)	188
MroXI	GAANNNNTTC	2 cut(s)	158, 197
MseI	TTAA	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	75, 100
MspR9I	CCNGG	2 cut(s)	75, 101
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	62, 77, 267
NciI	CCSGG	2 cut(s)	75, 101
NdeII	GATC	5 cut(s)	24, 174, 262, 316, 321
NlaIII	CATG	2 cut(s)	98, 335
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	216
NspI	RCATGY	1 cut(s)	98
PdmI	GAANNNNTTC	2 cut(s)	158, 197
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	3 cut(s)	108, 206, 282
PpuMI	RGGWCCY	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	184
PspPPI	RGGWCCY	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	24, 174
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	107, 205, 281
Sau3AI	GATC	5 cut(s)	24, 174, 262, 316, 321
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	75, 101
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	4 cut(s)	21, 189, 237, 255
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	179, 188
SmoI	CTYRAG	2 cut(s)	179, 188
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	73, 99
StyI	CCWWGG	2 cut(s)	81, 256
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	21
TasI	AATT	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	3 cut(s)	106, 204, 280
TspDTI	ATGAA	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	184
XceI	RCATGY	1 cut(s)	98
XmnI	GAANNNNTTC	2 cut(s)	158, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.