Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Reverse (-)

33605230 .. 33606662

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG304900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTTGAGTTAGACGTTGTGATCCCAACTGCTTTTGATCCATTTGCCGAAGCGAGAGGGGCCAAGGAGTATGTGCATATCCGTGTGCAGCAAAGGAATGGGAAGAAGTGCCTGACAACAGTTCAAGGGCTGAAGAAGGACTTCAGCTACGAGAAGATACTCAAGGATTTCAAGAAAGAGTTCTGCTGCAACGGCAATGTGGTTCATGACAAAGAGCTCGGCAAGATAATCCAGCTCCAAGGCGATCAGCGCAAGAACGTCCTCCAGTTTCTTGTCCAGGCAGGAATTGTCAAGAAGGAGCAGATCAAGATTCATGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

107

Amino Acids

12.28

Weight (kDa)

9.32

Isoelectric Point (pI)

12.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	22 - 96	2e-25	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	16, 32
AcuI	CTGAAG	2 cut(s)	127, 152
AgsI	TTSAA	2 cut(s)	125, 172
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	3 cut(s)	147, 217, 235
AluI	AGCT	3 cut(s)	147, 217, 235
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	16, 32
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	88, 186
Asp700I	GAANNNNTTC	2 cut(s)	140, 179
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	100, 173
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	89, 187
BlsI	GCNGC	2 cut(s)	90, 188
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	63, 238
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	63, 238
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	100, 173
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	21, 37, 244, 303
BspANI	GGCC	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	16, 32
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	63, 238
BssMI	GATC	4 cut(s)	21, 37, 244, 303
BssT1I	CCWWGG	2 cut(s)	63, 238
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	4 cut(s)	24, 40, 247, 306
BstMBI	GATC	4 cut(s)	21, 37, 244, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 192, 249
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	100, 173
BsuRI	GGCC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	60
CviAII	CATG	2 cut(s)	206, 314
CviJI	RGCY	5 cut(s)	62, 130, 147, 217, 235
CviKI_1	RGCY	5 cut(s)	62, 130, 147, 217, 235
DpnI	GATC	4 cut(s)	23, 39, 246, 305
DpnII	GATC	4 cut(s)	21, 37, 244, 303
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	63, 238
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	127, 152
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	63, 238
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	63, 238
FaeI	CATG	2 cut(s)	209, 317
FaiI	YATR	4 cut(s)	72, 78, 207, 315
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	2 cut(s)	205, 313
Fnu4HI	GCNGC	2 cut(s)	89, 187
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	89, 187
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	89, 187
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	209, 317
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	310
Hpy188III	TCNNGA	4 cut(s)	172, 206, 292, 307
HpyAV	CCTTC	2 cut(s)	130, 289
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	2 cut(s)	15, 258
HpyCH4V	TGCA	3 cut(s)	76, 88, 189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 192, 249
HpySE526I	ACGT	2 cut(s)	15, 258
Hsp92II	CATG	2 cut(s)	209, 317
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	21, 37, 244, 303
LmnI	GCTCC	2 cut(s)	240, 298
LpnPI	CCDG	6 cut(s)	125, 245, 263, 267, 278, 290
Lsp1109I	GCAGC	2 cut(s)	100, 173
MaeII	ACGT	2 cut(s)	15, 258
MalI	GATC	4 cut(s)	23, 39, 246, 305
MboI	GATC	4 cut(s)	21, 37, 244, 303
MboII	GAAGA	3 cut(s)	115, 145, 166
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	2 cut(s)	50, 272
MroXI	GAANNNNTTC	2 cut(s)	140, 179
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	59, 192, 249
NdeII	GATC	4 cut(s)	21, 37, 244, 303
NlaIII	CATG	2 cut(s)	209, 317
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	140, 179
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	90, 188
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	2 cut(s)	89, 187
Sau3AI	GATC	4 cut(s)	21, 37, 244, 303
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	5 cut(s)	18, 149, 219, 237, 261
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	63, 238
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	2 cut(s)	18, 261
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	88, 186
TspDTI	ATGAA	2 cut(s)	194, 302
TspGWI	ACGGA	1 cut(s)	71
XmnI	GAANNNNTTC	2 cut(s)	140, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.