Rorug05G0181300

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001356
Physical Location & Seq
Forward (+)
17446149 .. 17450792
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0181300.1

Sequence Viewer

Length: 1548 bp
ATGAGTACTACTGGATTCCCAGTATTCATTGTTTTAAGCTTTGTGTTTCTCTTCCTTCTGATCTTCAAGATCTATCACACACAATGGCGGACTCCCACTCGCCTACAGAAACTGATGGGTCTGCAGGGAATCAAGGGCCCTTCTTACAGACTTGTCCATGGAAACGCCAAAGAAATCTTGAACTTGAAGAAGGAGGCCATGAGCAGACCCAAAGGTTTATCACATGACATATTTCCTGTAGTTCAACCTCAGTATCACTCGTGGCTTAAGATATATGGAAAGATTTTTCTTCAGTGGTTAGGTACCGAAGCTCAGTTGGTGGTTATGGAACCTAAGTTGTGCAAAGAGATACTGAATAACAAAGACAGAGTTTATCTGCAAATGAAACAACAAGGGTTTGGGAAGAAGCTGTTAGGAAACAGCCTCGGGACTTCTGAAGGAGAACAATGGCTAAAACTTCGAAAGTTGGCCAACCATGCCTTCCATGGAGAGAGCTTAAAAAATATGGTTCCAGATATGATAGCTAGTGCTGAGAACATGCTACAAAGGTTGCAAAATAGCGAGGGCAAAGAGATCGAGATGTATCAAGAATTTAAGTTGTTTACTTCAGAAGTGATTTCCAGGACAGCATTTGGTAGTAGCTATTTACAAGGGAAGAAAATTTTTGACATGTTGACGGAGATATCCTTGTTATTGTTCAAAAATTCTTATAAGATCAGGCTTCCTGGTATCCGAAAGCTTTTCAAAACTAGTGATGAAATTCAAGCAGAGAAGCTTGAGAAGGAAATACGTGACACGATACTGGAGATTGTAAAGAAAAGAGAAAACAAAGCAGTGACTCAGCAAGATGAACACAACTTTGGGGGGGATTTTCTTGGATTACTTTTAAAGGCTCATCATGATGACAGTAATGACAGATATAGGGTCACGATAGATGATATAATTGATCAGTGCAAGGCATTGTACTTTGCTGGACAAGAAACCACTAATGGTTTGCTCGCTTGGACCGTCTTTCTTCTGGCACTCCATCAGGATTGGCAAGAGGAAGCGAGAAAAGAAGTCCTGCAATTATTTGGAAAACAGAATCCAAATTCCGAAGGCATTTCCAGACTAAAAACTATGAATATGATCATCAATGAGTCTCTAAGGTTATATCCTCCTGTCAGTCAACTTGTAAAGAAAGCTGAAAGGGAAAGTAGGCTGGGGAAGTTAATTGTTCCTGCTAATATTGATTTGGTCATCCCAACTGTAGCACTTCAGCATGACCCTCAAATATGGGGACAAGATGTGGAACTTTTCAAACCAGAGCGATTCTCAGAAGGGGTTGCCAAAGCTACTAAGGATAATATGGCTGCATTCATACCCTTTGGAATGGGACCTAGAATTTGTGTGGGTTTCAACTTTGCCACCACTGAAACTAAGATTGCTCTGTCAATGATTCTGCAACGCTACGCCTTCACCCTTTCCCCGGGTTACGTCCACTCTCCTCTTCATTTTCTTACAGTTCGCCCACAGCATGGAGTTCAAGTAATGCTACACTCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

515

Amino Acids

59.03

Weight (kDa)

9.33

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 90 - 493 3.9e-76 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 1517
AciI CCGC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 6 cut(s) 590, 660, 703, 759, 1090, 1383
AcuI CTGAAG 4 cut(s) 275, 456, 591, 1241
AfaI GTAC 3 cut(s) 7, 304, 965
AfiI CCNNNNNNNGG 2 cut(s) 1468, 1517
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 669
AhlI ACTAGT 1 cut(s) 749
AjnI CCWGG 2 cut(s) 620, 724
AjuI GAANNNNNNNTTGG 4 cut(s) 464, 496, 843, 875
Alw26I GTCTC 1 cut(s) 1146
AlwNI CAGNNNCTG 1 cut(s) 112
Ama87I CYCGRG 2 cut(s) 425, 1468
AoxI GGCC 3 cut(s) 136, 195, 468
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 1352
ApoI RAATTY 6 cut(s) 590, 660, 703, 759, 1090, 1383
ArsI GACNNNNNNTTYG 2 cut(s) 1368, 1400
Asp718I GGTACC 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 136, 137, 1005, 1376
AsuC2I CCSGG 2 cut(s) 1469, 1470
AsuHPI GGTGA 1 cut(s) 1450
AsuII TTCGAA 1 cut(s) 460
AvaI CYCGRG 2 cut(s) 425, 1468
AvaII GGWCC 2 cut(s) 1005, 1376
BaeGI GKGCMC 1 cut(s) 140
BaeI ACNNNNGTAYC 2 cut(s) 236, 269
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 140
BauI CACGAG 1 cut(s) 259
BbvI GCAGC 1 cut(s) 1339
BccI CCATC 2 cut(s) 109, 1035
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciT130I CCWGG 2 cut(s) 622, 726
BciVI GTATCC 1 cut(s) 740
BclI TGATCA 2 cut(s) 946, 1128
BcnI CCSGG 2 cut(s) 1469, 1470
BcoDI GTCTC 1 cut(s) 1146
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 3 cut(s) 525, 750, 1380
BfmI CTRYAG 4 cut(s) 104, 122, 237, 1248
BfrI CTTAAG 1 cut(s) 266
BfuI GTATCC 1 cut(s) 740
BglII AGATCT 1 cut(s) 69
BisI GCNGC 1 cut(s) 1353
BlsI GCNGC 1 cut(s) 1354
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 4 cut(s) 622, 726, 1469, 1470
Bme18I GGWCC 2 cut(s) 1005, 1376
BmeT110I CYCGRG 2 cut(s) 425, 1468
BmgT120I GGNCC 4 cut(s) 136, 137, 1005, 1376
BmiI GGNNCC 5 cut(s) 138, 304, 330, 510, 1377
BmrFI CCNGG 4 cut(s) 622, 726, 1469, 1470
BmrI ACTGGG 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 1298, 1330
BpmI CTGGAG 1 cut(s) 824
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 2 cut(s) 1469, 1470
BsaAI YACGTR 1 cut(s) 791
BsaJI CCNNGG 5 cut(s) 157, 424, 484, 1467, 1468
BsaXI ACNNNNNCTCC 2 cut(s) 1512, 1542
Bsc4I CCNNNNNNNGG 2 cut(s) 1468, 1517
Bse1I ACTGG 3 cut(s) 16, 20, 807
BseBI CCWGG 2 cut(s) 622, 726
BseDI CCNNGG 5 cut(s) 157, 424, 484, 1467, 1468
BseGI GGATG 1 cut(s) 1239
BseLI CCNNNNNNNGG 2 cut(s) 1468, 1517
BseMII CTCAG 5 cut(s) 263, 326, 522, 854, 1329
BseNI ACTGG 3 cut(s) 16, 20, 807
BseRI GAGGAG 1 cut(s) 1476
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 1 cut(s) 1339
BseYI CCCAGC 1 cut(s) 1201
BshFI GGCC 3 cut(s) 138, 197, 470
BshNI GGYRCC 1 cut(s) 302
BsiHKCI CYCGRG 2 cut(s) 425, 1468
BsiSI CCGG 1 cut(s) 1469
BslFI GGGAC 3 cut(s) 442, 1293, 1389
BslI CCNNNNNNNGG 2 cut(s) 1468, 1517
BsmAI GTCTC 1 cut(s) 1146
BsmFI GGGAC 3 cut(s) 442, 1293, 1389
BsmI GAATGC 1 cut(s) 1355
BsnI GGCC 3 cut(s) 138, 197, 470
BsoBI CYCGRG 2 cut(s) 425, 1468
Bsp119I TTCGAA 1 cut(s) 460
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
Bsp19I CCATGG 2 cut(s) 157, 484
BspACI CCGC 1 cut(s) 88
BspANI GGCC 3 cut(s) 138, 197, 470
BspCNI CTCAG 5 cut(s) 262, 325, 523, 853, 1328
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 5 cut(s) 138, 304, 330, 510, 1377
BspMAI CTGCAG 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 302
BspTI CTTAAG 1 cut(s) 266
BsrI ACTGG 3 cut(s) 16, 20, 807
BssECI CCNNGG 5 cut(s) 157, 424, 484, 1467, 1468
BssMI GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
BssSI CACGAG 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 157, 484
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 622, 726
Bst4CI ACNGT 4 cut(s) 908, 1009, 1249, 1504
Bst6I CTCTTC 2 cut(s) 56, 1494
BstAFI CTTAAG 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 999
BstDEI CTNAG 9 cut(s) 249, 312, 333, 531, 840, 1145, 1315, 1338, 1419
BstDSI CCRYGG 2 cut(s) 157, 484
BstF5I GGATG 1 cut(s) 1239
BstKTI GATC 6 cut(s) 63, 72, 576, 717, 949, 1131
BstMAI GTCTC 1 cut(s) 1146
BstMBI GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 2 cut(s) 622, 726
BstNSI RCATGY 2 cut(s) 541, 673
BstSCI CCNGG 4 cut(s) 620, 724, 1467, 1468
BstSFI CTRYAG 4 cut(s) 104, 122, 237, 1248
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 1339
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 3 cut(s) 138, 197, 470
BtgI CCRYGG 2 cut(s) 157, 484
BtsCI GGATG 1 cut(s) 1239
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 4 cut(s) 299, 840, 956, 1410
Cac8I GCNNGC 1 cut(s) 999
CaiI CAGNNNCTG 1 cut(s) 112
CciI TCATGA 1 cut(s) 898
Cfr13I GGNCC 4 cut(s) 136, 137, 1005, 1376
Cfr9I CCCGGG 1 cut(s) 1468
Csp6I GTAC 3 cut(s) 6, 303, 964
CviQI GTAC 3 cut(s) 6, 303, 964
DdeI CTNAG 9 cut(s) 249, 312, 333, 531, 840, 1145, 1315, 1338, 1419
DpnI GATC 6 cut(s) 62, 71, 575, 716, 948, 1130
DpnII GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
DraI TTTAAA 1 cut(s) 888
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 2 cut(s) 56, 1494
EarI CTCTTC 2 cut(s) 56, 1494
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 157, 484
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 2 cut(s) 1005, 1376
Eco57I CTGAAG 4 cut(s) 275, 456, 591, 1241
Eco88I CYCGRG 2 cut(s) 425, 1468
EcoO109I RGGNCCY 3 cut(s) 136, 137, 1376
EcoRII CCWGG 2 cut(s) 620, 724
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 157, 484
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 2 cut(s) 157, 484
FaqI GGGAC 3 cut(s) 442, 1293, 1389
FbaI TGATCA 2 cut(s) 946, 1128
Fnu4HI GCNGC 1 cut(s) 1353
FokI GGATG 1 cut(s) 1226
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 1353
FspBI CTAG 3 cut(s) 525, 750, 1380
GluI GCNGC 1 cut(s) 1353
GsaI CCCAGC 1 cut(s) 1205
GsuI CTGGAG 1 cut(s) 824
HaeIII GGCC 3 cut(s) 138, 197, 470
HapII CCGG 1 cut(s) 1469
HincII GTYRAC 2 cut(s) 675, 1169
HindII GTYRAC 2 cut(s) 675, 1169
HindIII AAGCTT 3 cut(s) 37, 737, 773
HinfI GANTC 8 cut(s) 15, 91, 129, 838, 1084, 1139, 1311, 1438
HpaII CCGG 1 cut(s) 1469
HphI GGTGA 1 cut(s) 1450
Hpy166II GTNNAC 4 cut(s) 603, 675, 1169, 1480
Hpy188I TCNGA 6 cut(s) 60, 436, 610, 734, 1096, 1318
Hpy8I GTNNAC 4 cut(s) 603, 675, 1169, 1480
HpyAV CCTTC 9 cut(s) 65, 150, 184, 431, 490, 775, 1091, 1313, 1465
HpyCH4III ACNGT 4 cut(s) 908, 1009, 1249, 1504
HpyCH4IV ACGT 2 cut(s) 790, 1476
HpyCH4V TGCA 8 cut(s) 124, 342, 379, 553, 954, 1066, 1355, 1444
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 9 cut(s) 249, 312, 333, 531, 840, 1145, 1315, 1338, 1419
HpySE526I ACGT 2 cut(s) 790, 1476
KpnI GGTACC 1 cut(s) 306
Ksp22I TGATCA 2 cut(s) 946, 1128
Kzo9I GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
Lsp1109I GCAGC 1 cut(s) 1339
MaeI CTAG 3 cut(s) 525, 750, 1380
MaeII ACGT 2 cut(s) 790, 1476
MaeIII GTNAC 4 cut(s) 791, 835, 925, 1472
MalI GATC 6 cut(s) 62, 71, 575, 716, 948, 1130
MboI GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
MboII GAAGA 8 cut(s) 43, 55, 199, 281, 415, 667, 1007, 1481
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 9 cut(s) 590, 660, 703, 759, 942, 1067, 1090, 1212, 1383
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 3 cut(s) 85, 832, 1148
MnlI CCTC 8 cut(s) 187, 258, 434, 556, 1036, 1167, 1278, 1497
Mox20I TGGCCA 1 cut(s) 470
MscI TGGCCA 1 cut(s) 470
MseI TTAA 6 cut(s) 35, 267, 497, 594, 887, 1211
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 1 cut(s) 1469
MspR9I CCNGG 4 cut(s) 622, 726, 1469, 1470
Mva1269I GAATGC 1 cut(s) 1355
MvaI CCWGG 2 cut(s) 622, 726
MwoI GCNNNNNNNGC 1 cut(s) 476
NciI CCSGG 2 cut(s) 1469, 1470
NcoI CCATGG 2 cut(s) 157, 484
NdeII GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
NlaIV GGNNCC 5 cut(s) 138, 304, 330, 510, 1377
NmuCI GTSAC 3 cut(s) 791, 835, 925
NspI RCATGY 2 cut(s) 541, 673
NspV TTCGAA 1 cut(s) 460
PagI TCATGA 1 cut(s) 898
PciI ACATGT 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 1005
PctI GAATGC 1 cut(s) 1355
PfeI GAWTC 5 cut(s) 15, 129, 1084, 1311, 1438
PflMI CCANNNNNTGG 1 cut(s) 1517
PfoI TCCNGGA 1 cut(s) 620
PkrI GCNGC 1 cut(s) 1354
PleI GAGTC 3 cut(s) 85, 832, 1147
PpsI GAGTC 3 cut(s) 85, 832, 1147
Ppu21I YACGTR 1 cut(s) 791
PpuMI RGGWCCY 1 cut(s) 1376
PscI ACATGT 1 cut(s) 669
PsiI TTATAA 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 1376
Psp6I CCWGG 2 cut(s) 620, 724
PspFI CCCAGC 1 cut(s) 1201
PspGI CCWGG 2 cut(s) 620, 724
PspN4I GGNNCC 5 cut(s) 138, 304, 330, 510, 1377
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 4 cut(s) 136, 137, 1005, 1376
PspPPI RGGWCCY 1 cut(s) 1376
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 7, 304, 965
RsaNI GTAC 3 cut(s) 6, 303, 964
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 6 cut(s) 35, 267, 497, 594, 887, 1211
SatI GCNGC 1 cut(s) 1353
Sau3AI GATC 6 cut(s) 60, 69, 573, 714, 946, 1128
Sau96I GGNCC 4 cut(s) 136, 137, 1005, 1376
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 3 cut(s) 85, 832, 1148
ScrFI CCNGG 4 cut(s) 622, 726, 1469, 1470
SduI GDGCHC 1 cut(s) 140
SfcI CTRYAG 4 cut(s) 104, 122, 237, 1248
SfuI TTCGAA 1 cut(s) 460
SinI GGWCC 2 cut(s) 1005, 1376
SmaI CCCGGG 1 cut(s) 1470
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 266, 776
SmoI CTYRAG 2 cut(s) 266, 776
SpeI ACTAGT 1 cut(s) 749
Sse9I AATT 9 cut(s) 590, 660, 703, 759, 942, 1067, 1090, 1212, 1383
SsiI CCGC 1 cut(s) 88
SspI AATATT 1 cut(s) 1228
SspMI CTAG 3 cut(s) 525, 750, 1380
StyD4I CCNGG 4 cut(s) 620, 724, 1467, 1468
StyI CCWWGG 2 cut(s) 157, 484
TaaI ACNGT 4 cut(s) 908, 1009, 1249, 1504
TaiI ACGT 2 cut(s) 793, 1479
TaqI TCGA 2 cut(s) 460, 576
TasI AATT 9 cut(s) 590, 660, 703, 759, 942, 1067, 1090, 1212, 1383
TatI WGTACW 2 cut(s) 5, 963
TfiI GAWTC 5 cut(s) 15, 129, 1084, 1311, 1438
Tru1I TTAA 6 cut(s) 35, 267, 497, 594, 887, 1211
Tru9I TTAA 6 cut(s) 35, 267, 497, 594, 887, 1211
TscAI CASTG 4 cut(s) 299, 840, 956, 1417
TseFI GTSAC 3 cut(s) 791, 835, 925
TseI GCWGC 1 cut(s) 1352
Tsp45I GTSAC 3 cut(s) 791, 835, 925
TspDTI ATGAA 7 cut(s) 16, 398, 771, 864, 1136, 1348, 1481
TspGWI ACGGA 1 cut(s) 692
TspMI CCCGGG 1 cut(s) 1468
TspRI CASTG 4 cut(s) 299, 840, 956, 1417
Van91I CCANNNNNTGG 1 cut(s) 1517
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 1005, 1376
XapI RAATTY 6 cut(s) 590, 660, 703, 759, 1090, 1383
XceI RCATGY 2 cut(s) 541, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmaI CCCGGG 1 cut(s) 1468
XspI CTAG 3 cut(s) 525, 750, 1380
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.