Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001356

Physical Location & Seq

Genomic Coordinates Forward (+)

21400637 .. 21400975

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGAATTAGACGTTCAGATCCCAAACCCTTTTGACCCCTTCTCCGAAGCTGAAGACTCGGATTCCCCCGGAGCCAAGGACTATGTGCATATCAGGGTGCAGCAGAGAAATGGAAAGAAGTGCCTAACGACAGTTCAAGGGCTGAAGAAAGACTTCAGCTACAACAAGATCCTCAAGGACCTCAAAAAAGAGTTCTGCTGCAACGGCAATGTCGTTCAGGACAAGGAGTTAGGCAAGATAATTCAGCTCCAAGGCGATCAACGCAAGAACGTGCTGCAGTTTCTCGTTCAGGCCGAGATTGTTAAGAAGGATCGGATCAAGATTCATGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

113

Amino Acids

12.85

Weight (kDa)

8.76

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	27 - 100	8e-25	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54940 AT5G54940 AT5G54940
fragaria_vesca	FvH4_3g21930 FvH4_3g22740 FvH4_6g45690
malus_domestica	MD03G1200400.v1.1 MD03G1210300.v1.1 MD11G1217400.v1.1 MD11G1224900.v1.1 MD17G1071700.v1.1
prunus_persica	Prupe.3G243100_v2.0.a1 Prupe.4G205000_v2.0.a1 Prupe.4G213900_v2.0.a1 Prupe.4G213900_v2.0.a1
pyrus_communis	pycom03g15190 pycom11g19130 pycom11g19860
rosa_chinensis	RchiOBHm_Chr2g0163841 RchiOBHm_Chr4g0415161 RchiOBHm_Chr5g0037751 RchiOBHm_Chr5g0039691
rosa_laevigata	RLG00000021421 RLG00000033807 RLG00000033936
rosa_multiflora	Rmu_sc0001181.1_g000007 Rmu_sc0003748.1_g000030 Rmu_sc0005416.1_g000003 Rmu_sc0006558.1_g000041
rosa_roxburghii	Rroxscaffold_1G00043150 Rroxscaffold_2G00086970 Rroxscaffold_5G00358990
rosa_rugosa	Rorug02G0504900 Rorug04G0132500 Rorug05G0166900 Rorug05G0181300
rosa_samantha	Rh2AG572900 Rh2BG583600 Rh4AG192700 Rh4BG190800 Rh4CG203500 Rh4DG190600 Rh5AG256300 Rh5AG267900 Rh5BG258600 Rh5BG272300 Rh5CG291700 Rh5CG304900 Rh5DG268300 Rh5DG280400
rosa_wichuraiana	Rw2G047370 Rw5G023760 Rw5G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	16, 166, 321, 326
AcuI	CTGAAG	3 cut(s)	75, 142, 167
AgsI	TTSAA	2 cut(s)	8, 140
AluBI	AGCT	3 cut(s)	53, 162, 250
AluI	AGCT	3 cut(s)	53, 162, 250
AlwI	GGATC	4 cut(s)	16, 166, 321, 326
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	103, 201, 277
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	115, 188, 264
BceAI	ACGGC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	3 cut(s)	104, 202, 278
BlsI	GCNGC	3 cut(s)	105, 203, 279
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	70, 78, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse3DI	GCAATG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	70, 78, 253
BseMI	GCAATG	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	115, 188, 264
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	72
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	5 cut(s)	21, 171, 259, 313, 318
BspANI	GGCC	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	4 cut(s)	16, 166, 321, 326
BsrDI	GCAATG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	70, 78, 253
BssMI	GATC	5 cut(s)	21, 171, 259, 313, 318
BssT1I	CCWWGG	2 cut(s)	78, 253
Bst4CI	ACNGT	1 cut(s)	136
BstKTI	GATC	5 cut(s)	24, 174, 262, 316, 321
BstMBI	GATC	5 cut(s)	21, 171, 259, 313, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 264
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	115, 188, 264
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	21, 171
BstYI	RGATCY	2 cut(s)	21, 171
BsuRI	GGCC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	6 cut(s)	53, 77, 145, 162, 250, 296
CviKI_1	RGCY	6 cut(s)	53, 77, 145, 162, 250, 296
DpnI	GATC	5 cut(s)	23, 173, 261, 315, 320
DpnII	GATC	5 cut(s)	21, 171, 259, 313, 318
Eco130I	CCWWGG	2 cut(s)	78, 253
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	3 cut(s)	75, 142, 167
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	78, 253
ErhI	CCWWGG	2 cut(s)	78, 253
FaeI	CATG	1 cut(s)	332
FaiI	YATR	3 cut(s)	87, 93, 330
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	104, 202, 278
Fsp4HI	GCNGC	3 cut(s)	104, 202, 278
GluI	GCNGC	3 cut(s)	104, 202, 278
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	1 cut(s)	332
HinfI	GANTC	3 cut(s)	59, 65, 325
HpaII	CCGG	1 cut(s)	72
Hpy188I	TCNGA	5 cut(s)	21, 49, 64, 318, 338
Hpy188III	TCNNGA	2 cut(s)	221, 322
HpyAV	CCTTC	2 cut(s)	52, 304
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	15, 273
HpyCH4V	TGCA	4 cut(s)	91, 103, 204, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 264
HpySE526I	ACGT	2 cut(s)	15, 273
Hsp92II	CATG	1 cut(s)	332
Kzo9I	GATC	5 cut(s)	21, 171, 259, 313, 318
LmnI	GCTCC	2 cut(s)	74, 255
LpnPI	CCDG	4 cut(s)	82, 85, 206, 278
Lsp1109I	GCAGC	3 cut(s)	115, 188, 264
MaeII	ACGT	2 cut(s)	15, 273
MalI	GATC	5 cut(s)	23, 173, 261, 315, 320
MboI	GATC	5 cut(s)	21, 171, 259, 313, 318
MboII	GAAGA	2 cut(s)	68, 160
MflI	RGATCY	2 cut(s)	21, 171
MluCI	AATT	2 cut(s)	8, 243
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	2 cut(s)	185, 194
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	306
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	207, 264
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	21, 171, 259, 313, 318
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 294
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	65, 325
PkrI	GCNGC	3 cut(s)	105, 203, 279
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	21, 171
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	104, 202, 278
Sau3AI	GATC	5 cut(s)	21, 171, 259, 313, 318
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	6 cut(s)	18, 55, 164, 186, 252, 276
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	8, 243
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	78, 253
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	18, 276
TasI	AATT	2 cut(s)	8, 243
TfiI	GAWTC	2 cut(s)	65, 325
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseI	GCWGC	3 cut(s)	103, 201, 277
TspDTI	ATGAA	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.