AT5G54855

pollen Ole e 1 allergen and extensin family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016113
Physical Location & Seq
Forward (+)
22282766 .. 22284391
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54855.1

Sequence Viewer

Length: 441 bp
ATGGATTCGAAGTTGAGAAATTTTGTGATGGGTCTGTTTGTGATGACTGCGATCTTGAATAATTCTGGTGTTGGCGCGTGGACTGGAGAGATTCGTGGTAGAGTTGTGTGTGATGTCTGTGCTGATTCTTCAATTGGACCAGAAGATCATGTTCTTGAAGGAGCTGAGGTTGCGGTTCTGTGCATAACCAAATCTGGAGAAGTTGTGAACTACCAAGCTTTCACAAACTCAAAAGGTGTCTACACAGTTGCAGAGACAATGCCAGAGAGCGAACGTTGGGACGCTTGCCTTGCAAGACCCATCAGCAGCTTCCACACACCTTGCAATCGCCTACACCAAACCAATACCGGAATCAAATTCACTTATAACCGCCCTTCCGGTTTCTTTCATGCCGTGAAACCATTTGTGTATCGACCTCAATATGCACCTTCTTATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

146

Amino Acids

16.15

Weight (kDa)

6.88

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 31 - 118 5.6e-10 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54855
fragaria_vesca FvH4_3g22360
malus_domestica MD03G1206100.v1.1 MD11G1221600.v1.1
prunus_persica Prupe.4G210000_v2.0.a1
pyrus_communis pycom11g19530
rosa_chinensis RchiOBHm_Chr5g0038891
rosa_laevigata RLG00000033879
rosa_multiflora Rmu_sc0000533.1_g000083
rosa_roxburghii Rroxscaffold_1G00042130
rosa_rugosa Rorug05G0174900
rosa_samantha Rh5BG266400 Rh5CG299400 Rh5DG273300
rosa_wichuraiana Rw5G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 173, 370
AclI AACGTT 1 cut(s) 274
AcsI RAATTY 2 cut(s) 19, 356
AgsI TTSAA 3 cut(s) 58, 132, 158
AluBI AGCT 3 cut(s) 164, 218, 309
AluI AGCT 3 cut(s) 164, 218, 309
Alw26I GTCTC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 2 cut(s) 19, 356
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 22, 308
BceAI ACGGC 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 248
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 105, 216
Bpu10I CCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 8
BsaWI WCCGGW 2 cut(s) 347, 377
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 189, 219
Bse1I ACTGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 77
BsiSI CCGG 2 cut(s) 348, 378
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 51, 145
BspACI CCGC 2 cut(s) 173, 370
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 8
BsrI ACTGG 1 cut(s) 88
BssMI GATC 2 cut(s) 51, 145
Bst4CI ACNGT 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 54, 148
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 51, 145
BstMWI GCNNNNNNNGC 2 cut(s) 170, 290
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 290
CspCI CAANNNNNGTGG 2 cut(s) 302, 337
CviAII CATG 2 cut(s) 149, 389
CviJI RGCY 3 cut(s) 164, 218, 309
CviKI_1 RGCY 3 cut(s) 164, 218, 309
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 53, 147
DpnII GATC 2 cut(s) 51, 145
Eco47I GGWCC 1 cut(s) 137
FaeI CATG 2 cut(s) 152, 392
FaiI YATR 5 cut(s) 150, 185, 366, 390, 423
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 148, 388
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 307
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 307
GsuI CTGGAG 2 cut(s) 105, 216
HapII CCGG 2 cut(s) 348, 378
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 152, 392
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 4 cut(s) 5, 91, 125, 351
HpaII CCGG 2 cut(s) 348, 378
Hpy166II GTNNAC 3 cut(s) 81, 208, 241
Hpy188III TCNNGA 3 cut(s) 55, 155, 195
Hpy8I GTNNAC 3 cut(s) 81, 208, 241
HpyAV CCTTC 3 cut(s) 152, 384, 438
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 5 cut(s) 183, 251, 293, 324, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 290
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 152, 392
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 51, 145
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 7 cut(s) 51, 69, 153, 180, 276, 361, 391
Lsp1109I GCAGC 1 cut(s) 318
MaeII ACGT 1 cut(s) 274
MalI GATC 2 cut(s) 53, 147
MboI GATC 2 cut(s) 51, 145
MboII GAAGA 2 cut(s) 120, 155
MfeI CAATTG 1 cut(s) 132
MluCI AATT 4 cut(s) 19, 61, 132, 356
MnlI CCTC 2 cut(s) 160, 426
MspI CCGG 2 cut(s) 348, 378
MunI CAATTG 1 cut(s) 132
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 170, 290
NdeII GATC 2 cut(s) 51, 145
NlaIII CATG 2 cut(s) 152, 392
NspV TTCGAA 1 cut(s) 8
PfeI GAWTC 4 cut(s) 5, 91, 125, 351
PkrI GCNGC 1 cut(s) 308
PsiI TTATAA 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 274
PspPI GGNCC 1 cut(s) 137
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 2 cut(s) 51, 145
Sau96I GGNCC 1 cut(s) 137
SetI ASST 9 cut(s) 166, 171, 220, 238, 277, 311, 322, 418, 430
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 137
Sse9I AATT 4 cut(s) 19, 61, 132, 356
SsiI CCGC 2 cut(s) 173, 370
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 8, 412
TasI AATT 4 cut(s) 19, 61, 132, 356
TfiI GAWTC 4 cut(s) 5, 91, 125, 351
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 2 cut(s) 19, 356
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.