Rorug05G0174900

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016113
Physical Location & Seq
Forward (+)
16266950 .. 16267369
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0174900.1

Sequence Viewer

Length: 420 bp
ATGGCCTCCTCCCCCAACCACACCCTTAACGGCGATTTAAACACCCACGCCTCCAAAAAGCCTAAACTTTCCTTCATCACCCCCTCCGAAATCGTCGCCGAATTCTCCCATCACGACCTCAACGTTGCCCGAATCAACAATGGCAGCTTCGGGTCCTGCCCTGACTCCATCATCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTTTCCCAGCCCGATCACTTCTACTTCAACGACCTCAAAAATAGCATCCTCCACTCTCAAACCATCATCAAGGATCTCATCAACACCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCTGCTGCCATTGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAATTCGAGAAGGGCGACGCTGTTGTCATGCTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

139

Amino Acids

15.45

Weight (kDa)

5.91

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54855
fragaria_vesca FvH4_3g22360
malus_domestica MD03G1206100.v1.1 MD11G1221600.v1.1
prunus_persica Prupe.4G210000_v2.0.a1
pyrus_communis pycom11g19530
rosa_chinensis RchiOBHm_Chr5g0038891
rosa_laevigata RLG00000033879
rosa_multiflora Rmu_sc0000533.1_g000083
rosa_roxburghii Rroxscaffold_1G00042130
rosa_rugosa Rorug05G0174900
rosa_samantha Rh5BG266400 Rh5CG299400 Rh5DG273300
rosa_wichuraiana Rw5G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccI GTMKAC 2 cut(s) 300, 318
AciI CCGC 3 cut(s) 187, 333, 360
AclI AACGTT 1 cut(s) 123
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 101, 383
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 2 cut(s) 174, 362
AluBI AGCT 2 cut(s) 147, 196
AluI AGCT 2 cut(s) 147, 196
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 1 cut(s) 285
AoxI GGCC 3 cut(s) 3, 177, 357
ApeKI GCWGC 4 cut(s) 144, 193, 335, 338
ApoI RAATTY 2 cut(s) 101, 383
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 153, 178
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 156, 205, 322, 325
BccI CCATC 4 cut(s) 117, 176, 275, 320
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 176, 364
BcoDI GTCTC 1 cut(s) 313
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 6 cut(s) 145, 187, 194, 336, 339, 360
BlsI GCNGC 6 cut(s) 146, 188, 195, 337, 340, 361
Bme1390I CCNGG 2 cut(s) 176, 364
Bme18I GGWCC 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 153, 178
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 176, 364
BmsI GCATC 1 cut(s) 258
BpmI CTGGAG 2 cut(s) 335, 398
BpuEI CTTGAG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 415
BseBI CCWGG 2 cut(s) 176, 364
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 171, 249
BseLI CCNNNNNNNGG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 4 cut(s) 156, 205, 322, 325
BseYI CCCAGC 2 cut(s) 180, 210
BshFI GGCC 3 cut(s) 5, 179, 359
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 313
BsnI GGCC 3 cut(s) 5, 179, 359
Bso31I GGTCTC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 217, 277
BspACI CCGC 3 cut(s) 187, 333, 360
BspANI GGCC 3 cut(s) 5, 179, 359
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 313
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 2 cut(s) 217, 277
Bst2UI CCWGG 2 cut(s) 176, 364
BstC8I GCNNGC 2 cut(s) 191, 357
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 171, 249
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 2 cut(s) 220, 280
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 217, 277
BstMWI GCNNNNNNNGC 2 cut(s) 190, 332
BstNI CCWGG 2 cut(s) 176, 364
BstSCI CCNGG 2 cut(s) 174, 362
BstV1I GCAGC 4 cut(s) 156, 205, 322, 325
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 3 cut(s) 5, 179, 359
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 171, 249
Cac8I GCNNGC 2 cut(s) 191, 357
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 153, 178
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 409
CviJI RGCY 8 cut(s) 5, 61, 147, 179, 196, 214, 359, 369
CviKI_1 RGCY 8 cut(s) 5, 61, 147, 179, 196, 214, 359, 369
CviQI GTAC 1 cut(s) 202
DpnI GATC 2 cut(s) 219, 279
DpnII GATC 2 cut(s) 217, 277
DraI TTTAAA 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 153
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 174, 362
FaeI CATG 1 cut(s) 412
FaiI YATR 1 cut(s) 410
FatI CATG 1 cut(s) 408
FblI GTMKAC 2 cut(s) 300, 318
Fnu4HI GCNGC 6 cut(s) 145, 187, 194, 336, 339, 360
FokI GGATG 2 cut(s) 158, 236
Fsp4HI GCNGC 6 cut(s) 145, 187, 194, 336, 339, 360
GlaI GCGC 1 cut(s) 185
GluI GCNGC 6 cut(s) 145, 187, 194, 336, 339, 360
GsaI CCCAGC 2 cut(s) 184, 214
GsuI CTGGAG 2 cut(s) 335, 398
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 5, 179, 359
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 2 cut(s) 301, 319
HindII GTYRAC 2 cut(s) 301, 319
HinfI GANTC 2 cut(s) 132, 164
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 301, 319
Hpy188I TCNGA 2 cut(s) 88, 376
Hpy188III TCNNGA 2 cut(s) 113, 388
Hpy8I GTNNAC 2 cut(s) 301, 319
Hpy99I CGWCG 5 cut(s) 98, 302, 305, 320, 401
HpyAV CCTTC 2 cut(s) 82, 385
HpyCH4IV ACGT 2 cut(s) 123, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 332
HpySE526I ACGT 2 cut(s) 123, 297
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 217, 277
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 4 cut(s) 156, 205, 322, 325
LweI GCATC 1 cut(s) 258
MaeII ACGT 2 cut(s) 123, 297
MalI GATC 2 cut(s) 219, 279
MboI GATC 2 cut(s) 217, 277
MflI RGATCY 1 cut(s) 277
MluCI AATT 2 cut(s) 101, 383
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 9 cut(s) 16, 19, 61, 94, 128, 248, 263, 298, 359
MseI TTAA 2 cut(s) 27, 38
MspA1I CMGCKG 2 cut(s) 189, 335
MspR9I CCNGG 2 cut(s) 176, 364
MvaI CCWGG 2 cut(s) 176, 364
MwoI GCNNNNNNNGC 2 cut(s) 190, 332
NdeII GATC 2 cut(s) 217, 277
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 154
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 393
PfeI GAWTC 1 cut(s) 132
PflFI GACNNNGTC 2 cut(s) 296, 305
PkrI GCNGC 6 cut(s) 146, 188, 195, 337, 340, 361
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 153
Psp1406I AACGTT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 174, 362
PspFI CCCAGC 2 cut(s) 180, 210
PspGI CCWGG 2 cut(s) 174, 362
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 153, 178
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 277
PsyI GACNNNGTC 2 cut(s) 296, 305
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SalI GTCGAC 2 cut(s) 299, 317
SaqAI TTAA 2 cut(s) 27, 38
SatI GCNGC 6 cut(s) 145, 187, 194, 336, 339, 360
Sau3AI GATC 2 cut(s) 217, 277
Sau96I GGNCC 2 cut(s) 153, 178
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 176, 364
SetI ASST 8 cut(s) 120, 126, 149, 198, 207, 240, 300, 309
SfaNI GCATC 1 cut(s) 258
SgrDI CGTCGACG 1 cut(s) 299
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 101, 383
SsiI CCGC 3 cut(s) 187, 333, 360
StyD4I CCNGG 2 cut(s) 174, 362
TaiI ACGT 2 cut(s) 126, 300
TaqI TCGA 3 cut(s) 300, 318, 387
TasI AATT 2 cut(s) 101, 383
TauI GCSGC 2 cut(s) 189, 362
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 27, 38
Tru9I TTAA 2 cut(s) 27, 38
TseI GCWGC 4 cut(s) 144, 193, 335, 338
TspDTI ATGAA 1 cut(s) 64
Tth111I GACNNNGTC 2 cut(s) 296, 305
VpaK11BI GGWCC 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 101, 383
XmiI GTMKAC 2 cut(s) 300, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.