FvH4_3g22360

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016113
Physical Location & Seq
Reverse (-)
15394090 .. 15396255
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22360.t1

Sequence Viewer

Length: 444 bp
ATGAAAGCAGAGAACAATATGAACAAGCTCGCGGTGGTCCTTGTCTTGTTGGCGGTCTTCATTTCCGGTATCGAAGCTTGGACTGGTGAAATCCACGGCAGAGTTATCTGTGATGTTTGTGGCGACTCCGCTCTCGGACCTGAAGACCATATTCTTGAAGGTGCTGAGGTAGCTGTTCTATGCATCACAAAATCCGGAGAAGTTTTAAATTACCAGGCATTCACGAATGCTAAGGGGAGATATACAGTGGCAGAGACTATGCCTGAGAGTGACCGCTGGGATGCATGCCTGGCACGACCTATTAGCAGCTTCCATGAGCACTGCACTCATCTCAGGGGTACCAGCTCAGGAGTAAAGTTCAGTTATAATCACCCATCAGGTTATTCTCACACCGTCAGAACTTTCGTCTATCAACCGTCTAGTGTACCAGCATACTGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

148

Amino Acids

16.06

Weight (kDa)

5.93

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 31 - 117 4.4e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54855
fragaria_vesca FvH4_3g22360
malus_domestica MD03G1206100.v1.1 MD11G1221600.v1.1
prunus_persica Prupe.4G210000_v2.0.a1
pyrus_communis pycom11g19530
rosa_chinensis RchiOBHm_Chr5g0038891
rosa_laevigata RLG00000033879
rosa_multiflora Rmu_sc0000533.1_g000083
rosa_roxburghii Rroxscaffold_1G00042130
rosa_rugosa Rorug05G0174900
rosa_samantha Rh5BG266400 Rh5CG299400 Rh5DG273300
rosa_wichuraiana Rw5G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 4 cut(s) 32, 53, 129, 274
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 340, 426
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 2 cut(s) 213, 288
AluBI AGCT 5 cut(s) 28, 77, 173, 309, 345
AluI AGCT 5 cut(s) 28, 77, 173, 309, 345
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 37, 137
AsuHPI GGTGA 2 cut(s) 98, 362
AvaII GGWCC 2 cut(s) 37, 137
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 49, 150
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 318
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 215, 290
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 420
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 215, 290
Bme18I GGWCC 2 cut(s) 37, 137
BmgT120I GGNCC 2 cut(s) 37, 137
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 2 cut(s) 215, 290
BmsI GCATC 2 cut(s) 192, 271
BpiI GAAGAC 2 cut(s) 49, 150
Bpu10I CCTNAGC 3 cut(s) 165, 231, 346
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 2 cut(s) 65, 194
Bse1I ACTGG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 2 cut(s) 215, 290
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 4 cut(s) 156, 255, 346, 360
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 66, 195
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 218, 232
Bsp1286I GDGCHC 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 194
BspACI CCGC 4 cut(s) 32, 53, 129, 274
BspCNI CTCAG 4 cut(s) 157, 256, 345, 359
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 215, 290
Bst4CI ACNGT 3 cut(s) 247, 394, 417
BstC8I GCNNGC 2 cut(s) 30, 286
BstDEI CTNAG 5 cut(s) 165, 231, 264, 332, 346
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 170, 290
BstNI CCWGG 2 cut(s) 215, 290
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 213, 288
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 2 cut(s) 49, 150
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 252, 319
Cac8I GCNNGC 2 cut(s) 30, 286
Cfr13I GGNCC 2 cut(s) 37, 137
Csp6I GTAC 2 cut(s) 339, 425
CviAII CATG 2 cut(s) 285, 314
CviJI RGCY 5 cut(s) 28, 77, 173, 309, 345
CviKI_1 RGCY 5 cut(s) 28, 77, 173, 309, 345
CviQI GTAC 2 cut(s) 339, 425
DdeI CTNAG 5 cut(s) 165, 231, 264, 332, 346
DraI TTTAAA 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 37, 137
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 213, 288
EcoT22I ATGCAT 2 cut(s) 185, 286
FaeI CATG 2 cut(s) 288, 317
FaiI YATR 9 cut(s) 20, 150, 181, 243, 260, 286, 315, 366, 433
FatI CATG 2 cut(s) 284, 313
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 280
HapII CCGG 2 cut(s) 66, 195
Hin1II CATG 2 cut(s) 288, 317
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 1 cut(s) 125
HpaII CCGG 2 cut(s) 66, 195
HphI GGTGA 2 cut(s) 98, 362
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 2 cut(s) 137, 398
Hpy188III TCNNGA 4 cut(s) 155, 195, 223, 348
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 247, 394, 417
HpyCH4V TGCA 4 cut(s) 183, 284, 324, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 290
HpyF3I CTNAG 5 cut(s) 165, 231, 264, 332, 346
Hsp92II CATG 2 cut(s) 288, 317
Kpn2I TCCGGA 1 cut(s) 194
KpnI GGTACC 1 cut(s) 342
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 2 cut(s) 192, 271
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 269
MbiI CCGCTC 1 cut(s) 131
MboII GAAGA 2 cut(s) 49, 155
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 1 cut(s) 160
Mph1103I ATGCAT 2 cut(s) 185, 286
MroI TCCGGA 1 cut(s) 194
MseI TTAA 2 cut(s) 206, 442
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 2 cut(s) 66, 195
MspR9I CCNGG 2 cut(s) 215, 290
Mva1269I GAATGC 2 cut(s) 218, 232
MvaI CCWGG 2 cut(s) 215, 290
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 170, 290
NlaIII CATG 2 cut(s) 288, 317
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 2 cut(s) 185, 286
NspI RCATGY 1 cut(s) 288
PaeI GCATGC 1 cut(s) 288
PctI GAATGC 2 cut(s) 218, 232
PkrI GCNGC 1 cut(s) 308
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 213, 288
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 2 cut(s) 213, 288
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 37, 137
RsaI GTAC 2 cut(s) 340, 426
RsaNI GTAC 2 cut(s) 339, 425
SaqAI TTAA 2 cut(s) 206, 442
SatI GCNGC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 37, 137
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 215, 290
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 2 cut(s) 192, 271
SinI GGWCC 2 cut(s) 37, 137
SphI GCATGC 1 cut(s) 288
Sse9I AATT 1 cut(s) 208
SsiI CCGC 4 cut(s) 32, 53, 129, 274
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 213, 288
TaaI ACNGT 3 cut(s) 247, 394, 417
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 208
Tru1I TTAA 2 cut(s) 206, 442
Tru9I TTAA 2 cut(s) 206, 442
TscAI CASTG 2 cut(s) 252, 326
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 17, 35, 49
TspRI CASTG 2 cut(s) 252, 326
VpaK11BI GGWCC 2 cut(s) 37, 137
XceI RCATGY 1 cut(s) 288
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 2 cut(s) 185, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.