Rh5DG273300

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016113
Physical Location & Seq
Forward (+)
33411806 .. 33419505
7700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG273300.1

Sequence Viewer

Length: 444 bp
ATGGAAGCAGAGATGAACAAGAAGAAGCCGGCGCTGGGCCTTGTCATCTTTACCGTCTTCATTTCCGGTATTGGAGCTTGGACCGGTGAAATCCACGGCAGAGTTATCTGTGATGTTTGTGGCGACTCCGCCCTCGGACCTGAAGATCATGTTCTAGAAGGTGCTGAGGTTGCTGTTCTATGCATCACAAAATCTGGGGAAGTTCTAAATTACCAGGCATTCACGAATGCTAAGGGGAGATATACAGTGGCAGAGACGATGCCTGAAAGTGACCGCTGGGATGCGTGCCTGGCACGACCTATCAGCAGCTTCCATGAGCACTGCACTCATCTCAGGGGTGCCAGATCAGGAGTAAAGTTCAGTTATAATCACCCATCAGGTTATTCTCACACCGTCAGAACTTTCGTCTATGGACCATCTAGTGTACCAGCATACTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

147

Amino Acids

16.0

Weight (kDa)

6.36

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 31 - 117 4.8e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54855
fragaria_vesca FvH4_3g22360
malus_domestica MD03G1206100.v1.1 MD11G1221600.v1.1
prunus_persica Prupe.4G210000_v2.0.a1
pyrus_communis pycom11g19530
rosa_chinensis RchiOBHm_Chr5g0038891
rosa_laevigata RLG00000033879
rosa_multiflora Rmu_sc0000533.1_g000083
rosa_roxburghii Rroxscaffold_1G00042130
rosa_rugosa Rorug05G0174900
rosa_samantha Rh5BG266400 Rh5CG299400 Rh5DG273300
rosa_wichuraiana Rw5G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 2 cut(s) 129, 274
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 213, 288
AluBI AGCT 2 cut(s) 77, 309
AluI AGCT 2 cut(s) 77, 309
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 306
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 37, 81, 137, 413
AsuHPI GGTGA 2 cut(s) 98, 362
AvaII GGWCC 3 cut(s) 81, 137, 413
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 382, 424
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 215, 290
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 155, 420
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 215, 290
Bme18I GGWCC 3 cut(s) 81, 137, 413
BmgT120I GGNCC 4 cut(s) 37, 81, 137, 413
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 2 cut(s) 215, 290
BmsI GCATC 3 cut(s) 192, 249, 271
BpiI GAAGAC 1 cut(s) 49
Bpu10I CCTNAGC 2 cut(s) 165, 231
BsaJI CCNNGG 2 cut(s) 94, 133
BsaWI WCCGGW 2 cut(s) 65, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 2 cut(s) 28, 83
BseBI CCWGG 2 cut(s) 215, 290
BseDI CCNNGG 2 cut(s) 94, 133
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 156, 346
BseXI GCAGC 1 cut(s) 318
BseYI CCCAGC 2 cut(s) 34, 276
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 338
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 3 cut(s) 29, 66, 84
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 218, 232
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 145, 344
BspACI CCGC 2 cut(s) 129, 274
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 157, 345
BspLI GGNNCC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 2 cut(s) 28, 83
BssAI RCCGGY 2 cut(s) 28, 83
BssECI CCNNGG 2 cut(s) 94, 133
BssMI GATC 2 cut(s) 145, 344
Bst2UI CCWGG 2 cut(s) 215, 290
Bst4CI ACNGT 3 cut(s) 55, 247, 394
BstC8I GCNNGC 2 cut(s) 30, 286
BstDEI CTNAG 3 cut(s) 165, 231, 332
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 148, 347
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 145, 344
BstMWI GCNNNNNNNGC 2 cut(s) 170, 290
BstNI CCWGG 2 cut(s) 215, 290
BstSCI CCNGG 2 cut(s) 213, 288
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 252, 319
Cac8I GCNNGC 2 cut(s) 30, 286
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 2 cut(s) 28, 83
Cfr13I GGNCC 4 cut(s) 37, 81, 137, 413
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 2 cut(s) 149, 314
CviJI RGCY 4 cut(s) 28, 39, 77, 309
CviKI_1 RGCY 4 cut(s) 28, 39, 77, 309
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 3 cut(s) 165, 231, 332
DpnI GATC 2 cut(s) 147, 346
DpnII GATC 2 cut(s) 145, 344
EciI GGCGGA 1 cut(s) 118
Eco47I GGWCC 3 cut(s) 81, 137, 413
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 213, 288
EcoT22I ATGCAT 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 2 cut(s) 152, 317
FaiI YATR 7 cut(s) 150, 181, 243, 315, 366, 411, 433
FatI CATG 2 cut(s) 148, 313
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 2 cut(s) 155, 420
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 307
GsaI CCCAGC 2 cut(s) 38, 280
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 29, 66, 84
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 152, 317
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 125
HpaII CCGG 3 cut(s) 29, 66, 84
HphI GGTGA 2 cut(s) 98, 362
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 2 cut(s) 137, 398
Hpy188III TCNNGA 3 cut(s) 155, 223, 348
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 55, 247, 394
HpyCH4V TGCA 3 cut(s) 183, 324, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 290
HpyF3I CTNAG 3 cut(s) 165, 231, 332
Hsp92II CATG 2 cut(s) 152, 317
HspAI GCGC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 145, 344
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 3 cut(s) 192, 249, 271
MaeI CTAG 2 cut(s) 155, 420
MaeIII GTNAC 1 cut(s) 269
MalI GATC 2 cut(s) 147, 346
MboI GATC 2 cut(s) 145, 344
MboII GAAGA 3 cut(s) 34, 49, 155
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 143, 160
Mph1103I ATGCAT 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 28
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 3 cut(s) 29, 66, 84
MspR9I CCNGG 2 cut(s) 215, 290
Mva1269I GAATGC 2 cut(s) 218, 232
MvaI CCWGG 2 cut(s) 215, 290
MwoI GCNNNNNNNGC 2 cut(s) 170, 290
NaeI GCCGGC 1 cut(s) 30
NdeII GATC 2 cut(s) 145, 344
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 152, 317
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 185
PctI GAATGC 2 cut(s) 218, 232
PdiI GCCGGC 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 1 cut(s) 308
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 213, 288
PspFI CCCAGC 2 cut(s) 34, 276
PspGI CCWGG 2 cut(s) 213, 288
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 4 cut(s) 37, 81, 137, 413
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 2 cut(s) 145, 344
Sau96I GGNCC 4 cut(s) 37, 81, 137, 413
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 215, 290
SduI GDGCHC 1 cut(s) 321
SetI ASST 7 cut(s) 79, 142, 163, 171, 301, 311, 382
SfaNI GCATC 3 cut(s) 192, 249, 271
SinI GGWCC 3 cut(s) 81, 137, 413
Sse9I AATT 1 cut(s) 208
SsiI CCGC 2 cut(s) 129, 274
SspMI CTAG 2 cut(s) 155, 420
StyD4I CCNGG 2 cut(s) 213, 288
TaaI ACNGT 3 cut(s) 55, 247, 394
TasI AATT 1 cut(s) 208
TscAI CASTG 2 cut(s) 252, 326
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 29, 49
TspRI CASTG 2 cut(s) 252, 326
VpaK11BI GGWCC 3 cut(s) 81, 137, 413
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 155, 420
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.