RchiOBHm_Chr5g0038891

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016113
Physical Location & Seq
Forward (+)
33653503 .. 33656014
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31748

Sequence Viewer

Length: 444 bp
ATGGAAGCAGAGATGAACAAGAAGAAGCTGGCGGCGGGCCTTGTCATCCTTACAGTCTTCATTTCCCGCATCGGAGCTTGGACCGGTGAAATCAACGGCGGAGTTATCTGTGATGTTTGCGGCGACTCCGCCCTCGGACCTGAAGATCATATTCTAGAAGGTGCTGAGGTTGCTGTTCTATGCATCACAAAATCTGGGGAAGTTCTAAATTACCAGGCATTCACGAATGCTAAGGGGAGATATACAGTGGCAGAGACGATGCCTGAAAGTGACCGCTGGGATGCGTGCCTGGCACGACCTATCAGCAGCTTCCATGAGCACTGCACTCATCTCAGGGGTGCCAGCTCAGGAGTAAAGTTCAGTTATAATCACCCATCAGGTTATTCTCACACCGTCAGAACTTTCGTCTATCGACCGTCTAGTGTACCAGCATACTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

147

Amino Acids

15.96

Weight (kDa)

6.28

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 31 - 117 8.5e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54855
fragaria_vesca FvH4_3g22360
malus_domestica MD03G1206100.v1.1 MD11G1221600.v1.1
prunus_persica Prupe.4G210000_v2.0.a1
pyrus_communis pycom11g19530
rosa_chinensis RchiOBHm_Chr5g0038891
rosa_laevigata RLG00000033879
rosa_multiflora Rmu_sc0000533.1_g000083
rosa_roxburghii Rroxscaffold_1G00042130
rosa_rugosa Rorug05G0174900
rosa_samantha Rh5BG266400 Rh5CG299400 Rh5DG273300
rosa_wichuraiana Rw5G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 7 cut(s) 32, 35, 67, 99, 120, 129, 274
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 426
AgeI ACCGGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 213, 288
AluBI AGCT 4 cut(s) 28, 77, 309, 345
AluI AGCT 4 cut(s) 28, 77, 309, 345
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 306
AsiGI ACCGGT 1 cut(s) 83
AspS9I GGNCC 3 cut(s) 37, 81, 137
AsuHPI GGTGA 2 cut(s) 98, 362
AvaII GGWCC 2 cut(s) 81, 137
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 318
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 215, 290
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 155, 420
BisI GCNGC 3 cut(s) 33, 121, 307
BlsI GCNGC 3 cut(s) 34, 122, 308
Bme1390I CCNGG 2 cut(s) 215, 290
Bme18I GGWCC 2 cut(s) 81, 137
BmgT120I GGNCC 3 cut(s) 37, 81, 137
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 2 cut(s) 215, 290
BmsI GCATC 4 cut(s) 78, 192, 249, 271
BpiI GAAGAC 1 cut(s) 49
Bpu10I CCTNAGC 3 cut(s) 165, 231, 346
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
BseBI CCWGG 2 cut(s) 215, 290
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 45, 286
BseMII CTCAG 3 cut(s) 156, 346, 360
BseXI GCAGC 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 338
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 218, 232
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 7 cut(s) 32, 35, 67, 99, 120, 129, 274
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 3 cut(s) 157, 345, 359
BspLI GGNNCC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 215, 290
Bst4CI ACNGT 4 cut(s) 55, 247, 394, 417
BstC8I GCNNGC 4 cut(s) 30, 37, 286, 343
BstDEI CTNAG 4 cut(s) 165, 231, 332, 346
BstF5I GGATG 2 cut(s) 45, 286
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 2 cut(s) 170, 290
BstNI CCWGG 2 cut(s) 215, 290
BstSCI CCNGG 2 cut(s) 213, 288
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 45, 286
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 252, 319
Cac8I GCNNGC 4 cut(s) 30, 37, 286, 343
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 37, 81, 137
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 1 cut(s) 314
CviJI RGCY 5 cut(s) 28, 39, 77, 309, 345
CviKI_1 RGCY 5 cut(s) 28, 39, 77, 309, 345
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 4 cut(s) 165, 231, 332, 346
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EciI GGCGGA 2 cut(s) 114, 118
Eco47I GGWCC 2 cut(s) 81, 137
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 213, 288
EcoT22I ATGCAT 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 1 cut(s) 317
FaiI YATR 6 cut(s) 150, 181, 243, 315, 366, 433
FatI CATG 1 cut(s) 313
FauI CCCGC 2 cut(s) 28, 74
Fnu4HI GCNGC 3 cut(s) 33, 121, 307
FokI GGATG 2 cut(s) 32, 293
Fsp4HI GCNGC 3 cut(s) 33, 121, 307
FspBI CTAG 2 cut(s) 155, 420
GluI GCNGC 3 cut(s) 33, 121, 307
GsaI CCCAGC 1 cut(s) 280
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 84
Hin1II CATG 1 cut(s) 317
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 98, 362
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 74, 137, 398
Hpy188III TCNNGA 3 cut(s) 155, 223, 348
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 4 cut(s) 55, 247, 394, 417
HpyCH4V TGCA 3 cut(s) 183, 324, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 290
HpyF3I CTNAG 4 cut(s) 165, 231, 332, 346
Hsp92II CATG 1 cut(s) 317
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 4 cut(s) 78, 192, 249, 271
MaeI CTAG 2 cut(s) 155, 420
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 34, 49, 155
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 143, 160
Mph1103I ATGCAT 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 215, 290
Mva1269I GAATGC 2 cut(s) 218, 232
MvaI CCWGG 2 cut(s) 215, 290
MwoI GCNNNNNNNGC 2 cut(s) 170, 290
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 185
PctI GAATGC 2 cut(s) 218, 232
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 3 cut(s) 34, 122, 308
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 213, 288
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 2 cut(s) 213, 288
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 3 cut(s) 37, 81, 137
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SatI GCNGC 3 cut(s) 33, 121, 307
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 3 cut(s) 37, 81, 137
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 215, 290
SduI GDGCHC 1 cut(s) 321
SetI ASST 9 cut(s) 30, 79, 142, 163, 171, 301, 311, 347, 382
SfaNI GCATC 4 cut(s) 78, 192, 249, 271
SinI GGWCC 2 cut(s) 81, 137
Sse9I AATT 1 cut(s) 208
SsiI CCGC 7 cut(s) 32, 35, 67, 99, 120, 129, 274
SspMI CTAG 2 cut(s) 155, 420
StyD4I CCNGG 2 cut(s) 213, 288
TaaI ACNGT 4 cut(s) 55, 247, 394, 417
TaqI TCGA 1 cut(s) 412
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 35, 123
TscAI CASTG 2 cut(s) 252, 326
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 29, 49
TspRI CASTG 2 cut(s) 252, 326
VpaK11BI GGWCC 2 cut(s) 81, 137
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 155, 420
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.