Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013021

Physical Location & Seq

Genomic Coordinates Reverse (-)

22558044 .. 22560541

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCCAAGAAGATGAGTTCTCTCATCATCATCTTCAACATTCTCCTTCTCCTCACAACTCAAACCCACGCGCACAACGTCACGCGCCTCCTAGCAAACCACCCATCATTCTCTTCCTTCAGCCATTTCCTAACACAAACACACCTCGCCGACGAAATCAACCGGAGAAGAACCATAACCGTTTGCGCAGTAGATAACGCCGCCATGTCAGCATTAACCTCTAAAGGCTATACACTCTCAACTCTCAAAAACATTCTCTCCCTCCACGTCCTTTTAGATTACTTCGGAACCAAAAAACTCCACCAGATCCGTGACGGCTCTGCTCTCGCCGCTACTCTGTTTCAAGCCACCGGAGCTGCTCCTGGAACCTCAGGATTCGTTAACATAACGGATCTGAGAGGTGGTAAAGTTGGGTTTGGTCCTGACGGTGGAGATCTGTCTTCTTTCTTTGTTAAATCTATTGAAGAAGTTCCGTATAACATCTCCATTATTCAGATCAGTAGAGTTTTACCGTCGGAGACTGCGGCGGCTCCGACTCCTGCTCCGGCGGAGATGAATCTTACCGGAATAATGTCGGCTCATGGATGCAAAGTGTTTGCTGAGACTCTTCTCACTAACCCTGGAGCTTCAAAAACCTATCAGGAGAGTTTAGAAGGAGGCATGACAGTGTTCTGTCCAGGAGATGATGCAATGAAAGGTTTCTTGCCCAAATACAAGAACTTGACAGCTCCAAAGAAAGAAGCATTTCTCGATTTCCTCGCTGTCCCGACATATTACTCAATGGCGATGCTCAAATCCAACAATGGTCCGATGAACACACTTGCGACAGATGGAGCTAACAAGTTTGAGCTTACTGTACAGAACGATGGAGAGAAGGTTACCCTCAAGACAAGGATCAACACTGTCAAGATCGTTGATACTCTTATTGATGAGCAGCCTTTAGCTATATATGCGACTGATAAGGTTTTGTTGCCTAAAGAGTTGTTTAAGGCTTCGGCTGTTGAAGCTCCGGCTCCTGCTCCGGCACCAGAGGATGGTGATGTTGCGGATTCTCCAAAAGCGGCTAAAGGGAAAGCGAAAGGAAAGAAGAAGAAGGCTGCACCGTCGCCAGATAATGATCCTTTTGGTGACTCGGATTCGCCTGCCGAAGGGCCTGACGGAGAGGCCGATGATGCGACGGCAGATGATGCTGGTGCGGTTAGGATCATCGGAGGAGCTAAGGCTGGTTTGGTGGTGAGCTTGCTCTGCTTGTTTGCTTCTTCTTGGCTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0022622 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0071944 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

424

Amino Acids

44.85

Weight (kDa)

6.26

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	36 - 103	3.2e-06	Fasciclin domain
Fasciclin	PF02469	204 - 325	2.2e-11	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55730 AT5G55730
fragaria_vesca	FvH4_3g29120
malus_domestica	MD03G1179200.v1.1 MD11G1198600.v1.1
prunus_persica	Prupe.4G244100_v2.0.a1
pyrus_communis	pycom03g13520
rosa_chinensis	RchiOBHm_Chr5g0051361 RchiOBHm_Chr5g0053441
rosa_laevigata	RLG00000034881
rosa_multiflora	Rmu_sc0001054.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027000
rosa_rugosa	Rorug05G0279900
rosa_samantha	Rh5AG351000 Rh5BG363300 Rh5CG387700 Rh5DG377900
rosa_wichuraiana	Rw5G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	1024
AccB7I	CCANNNNNTGG	1 cut(s)	1034
AccII	CGCG	2 cut(s)	71, 85
AciI	CCGC	8 cut(s)	201, 330, 524, 527, 548, 1046, 1061, 1196
AclWI	GGATC	5 cut(s)	301, 399, 902, 1112, 1211
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	858
AfiI	CCNNNNNNNGG	3 cut(s)	428, 1034, 1148
AgsI	TTSAA	5 cut(s)	37, 344, 464, 630, 1004
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	3 cut(s)	361, 619, 676
AluBI	AGCT	9 cut(s)	356, 626, 728, 836, 850, 944, 1007, 1217, 1239
AluI	AGCT	9 cut(s)	356, 626, 728, 836, 850, 944, 1007, 1217, 1239
Alw26I	GTCTC	2 cut(s)	512, 596
AlwI	GGATC	5 cut(s)	301, 399, 902, 1112, 1211
AoxI	GGCC	3 cut(s)	3, 1151, 1164
ApeKI	GCWGC	3 cut(s)	356, 934, 1097
Asp700I	GAANNNNTTC	3 cut(s)	468, 698, 744
AspLEI	GCGC	3 cut(s)	73, 87, 188
AspS9I	GGNCC	3 cut(s)	419, 806, 1151
AsuHPI	GGTGA	3 cut(s)	1049, 1139, 1246
AvaII	GGWCC	2 cut(s)	419, 806
AxyI	CCTNAGG	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1024
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	343, 946, 1084
BccI	CCATC	4 cut(s)	112, 824, 860, 1028
BceAI	ACGGC	2 cut(s)	331, 1194
BciT130I	CCWGG	3 cut(s)	363, 621, 678
BcoDI	GTCTC	2 cut(s)	512, 596
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	1271
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	8 cut(s)	201, 330, 357, 525, 528, 935, 1062, 1098
BlsI	GCNGC	8 cut(s)	202, 331, 358, 526, 529, 936, 1063, 1099
Bme1390I	CCNGG	3 cut(s)	363, 621, 678
Bme18I	GGWCC	2 cut(s)	419, 806
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	3 cut(s)	419, 806, 1151
BmiI	GGNNCC	5 cut(s)	289, 367, 531, 1014, 1026
BmrFI	CCNGG	3 cut(s)	363, 621, 678
BmsI	GCATC	5 cut(s)	575, 676, 777, 1162, 1177
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	1218
BpuEI	CTTGAG	1 cut(s)	869
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	1 cut(s)	619
BsaWI	WCCGGW	3 cut(s)	162, 350, 563
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 526, 556, 861, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	428, 1034, 1148
Bse21I	CCTNAGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	1116
BseBI	CCWGG	3 cut(s)	363, 621, 678
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	2 cut(s)	590, 1039
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	3 cut(s)	428, 1034, 1148
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	384, 386, 591
BseRI	GAGGAG	2 cut(s)	41, 1227
BseXI	GCAGC	3 cut(s)	343, 946, 1084
BsgI	GTGCAG	1 cut(s)	1083
Bsh1236I	CGCG	2 cut(s)	71, 85
BshFI	GGCC	3 cut(s)	5, 1153, 1166
BshNI	GGYRCC	1 cut(s)	1024
BsiSI	CCGG	6 cut(s)	163, 351, 545, 564, 1010, 1022
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	3 cut(s)	428, 1034, 1148
BsmAI	GTCTC	2 cut(s)	512, 596
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	3 cut(s)	5, 1153, 1166
Bsp1407I	TGTACA	1 cut(s)	856
Bsp143I	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
BspACI	CCGC	8 cut(s)	201, 330, 524, 527, 548, 1046, 1061, 1196
BspANI	GGCC	3 cut(s)	5, 1153, 1166
BspCNI	CTCAG	3 cut(s)	383, 387, 592
BspFNI	CGCG	2 cut(s)	71, 85
BspLI	GGNNCC	5 cut(s)	289, 367, 531, 1014, 1026
BspPI	GGATC	5 cut(s)	301, 399, 902, 1112, 1211
BspT107I	GGYRCC	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	696
BsrGI	TGTACA	1 cut(s)	856
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
Bst2UI	CCWGG	3 cut(s)	363, 621, 678
Bst4CI	ACNGT	7 cut(s)	181, 428, 513, 667, 856, 904, 1104
Bst6I	CTCTTC	2 cut(s)	118, 612
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstAUI	TGTACA	1 cut(s)	856
BstC8I	GCNNGC	2 cut(s)	1143, 1241
BstDEI	CTNAG	4 cut(s)	370, 395, 600, 1218
BstEII	GGTNACC	1 cut(s)	877
BstENI	CCTNNNNNAGG	1 cut(s)	1146
BstF5I	GGATG	2 cut(s)	590, 1039
BstFNI	CGCG	2 cut(s)	71, 85
BstHHI	GCGC	3 cut(s)	73, 87, 188
BstKTI	GATC	8 cut(s)	309, 394, 436, 498, 897, 912, 1120, 1206
BstMAI	GTCTC	2 cut(s)	512, 596
BstMBI	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
BstMWI	GCNNNNNNNGC	8 cut(s)	209, 329, 353, 950, 1004, 1172, 1187, 1245
BstNI	CCWGG	3 cut(s)	363, 621, 678
BstPI	GGTNACC	1 cut(s)	877
BstSCI	CCNGG	3 cut(s)	361, 619, 676
BstSFI	CTRYAG	1 cut(s)	1271
BstUI	CGCG	2 cut(s)	71, 85
BstV1I	GCAGC	3 cut(s)	343, 946, 1084
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	3 cut(s)	306, 391, 433
BstYI	RGATCY	3 cut(s)	306, 391, 433
Bsu36I	CCTNAGG	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	5, 1153, 1166
BtgZI	GCGATG	1 cut(s)	800
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	590, 1039
BtsIMutI	CAGTG	2 cut(s)	672, 900
Cac8I	GCNNGC	2 cut(s)	1143, 1241
CfoI	GCGC	3 cut(s)	73, 87, 188
Cfr13I	GGNCC	3 cut(s)	419, 806, 1151
Csp6I	GTAC	1 cut(s)	857
CviAII	CATG	3 cut(s)	205, 581, 661
CviQI	GTAC	1 cut(s)	857
DdeI	CTNAG	4 cut(s)	370, 395, 600, 1218
DpnI	GATC	8 cut(s)	308, 393, 435, 497, 896, 911, 1119, 1205
DpnII	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	118, 612
EarI	CTCTTC	2 cut(s)	118, 612
EciI	GGCGGA	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	419, 806
Eco57I	CTGAAG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	370
Eco91I	GGTNACC	1 cut(s)	877
EcoNI	CCTNNNNNAGG	1 cut(s)	1146
EcoO109I	RGGNCCY	1 cut(s)	1151
EcoO65I	GGTNACC	1 cut(s)	877
EcoRII	CCWGG	3 cut(s)	361, 619, 676
FaeI	CATG	3 cut(s)	208, 584, 664
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	204, 580, 660
Fnu4HI	GCNGC	8 cut(s)	201, 330, 357, 525, 528, 935, 1062, 1098
FokI	GGATG	2 cut(s)	597, 1046
Fsp4HI	GCNGC	8 cut(s)	201, 330, 357, 525, 528, 935, 1062, 1098
FspBI	CTAG	1 cut(s)	92
FspI	TGCGCA	1 cut(s)	187
GlaI	GCGC	3 cut(s)	72, 86, 187
GluI	GCNGC	8 cut(s)	201, 330, 357, 525, 528, 935, 1062, 1098
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	3 cut(s)	5, 1153, 1166
HapII	CCGG	6 cut(s)	163, 351, 545, 564, 1010, 1022
HhaI	GCGC	3 cut(s)	73, 87, 188
Hin1II	CATG	3 cut(s)	208, 584, 664
Hin6I	GCGC	3 cut(s)	71, 85, 186
HinP1I	GCGC	3 cut(s)	71, 85, 186
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	7 cut(s)	375, 535, 556, 604, 1049, 1130, 1136
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	6 cut(s)	163, 351, 545, 564, 1010, 1022
HphI	GGTGA	3 cut(s)	1049, 1139, 1246
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	8 cut(s)	287, 396, 495, 517, 534, 810, 1135, 1211
Hpy188III	TCNNGA	7 cut(s)	372, 422, 641, 749, 766, 886, 907
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	4 cut(s)	155, 517, 1108, 1180
HpyAV	CCTTC	6 cut(s)	56, 127, 647, 868, 1087, 1142
HpyCH4III	ACNGT	7 cut(s)	181, 428, 513, 667, 856, 904, 1104
HpyCH4IV	ACGT	2 cut(s)	78, 267
HpyCH4V	TGCA	3 cut(s)	588, 689, 1100
HpyF10VI	GCNNNNNNNGC	8 cut(s)	209, 329, 353, 950, 1004, 1172, 1187, 1245
HpyF3I	CTNAG	4 cut(s)	370, 395, 600, 1218
HpySE526I	ACGT	2 cut(s)	78, 267
Hsp92II	CATG	3 cut(s)	208, 584, 664
HspAI	GCGC	3 cut(s)	71, 85, 186
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
Lsp1109I	GCAGC	3 cut(s)	343, 946, 1084
LweI	GCATC	5 cut(s)	575, 676, 777, 1162, 1177
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	2 cut(s)	78, 267
MaeIII	GTNAC	4 cut(s)	79, 311, 877, 1127
MalI	GATC	8 cut(s)	308, 393, 435, 497, 896, 911, 1119, 1205
MboI	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
MflI	RGATCY	3 cut(s)	306, 391, 433
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	529, 598, 1124
MmeI	TCCRAC	3 cut(s)	495, 557, 822
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	3 cut(s)	468, 698, 744
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	215, 381, 453, 987
MslI	CAYNNNNRTG	1 cut(s)	665
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	163, 351, 545, 564, 1010, 1022
MspR9I	CCNGG	3 cut(s)	363, 621, 678
MvaI	CCWGG	3 cut(s)	363, 621, 678
MvnI	CGCG	2 cut(s)	71, 85
MwoI	GCNNNNNNNGC	8 cut(s)	209, 329, 353, 950, 1004, 1172, 1187, 1245
NdeII	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
NlaIII	CATG	3 cut(s)	208, 584, 664
NlaIV	GGNNCC	5 cut(s)	289, 367, 531, 1014, 1026
NmuCI	GTSAC	3 cut(s)	79, 311, 1127
NsbI	TGCGCA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 1164
PdmI	GAANNNNTTC	3 cut(s)	468, 698, 744
PfeI	GAWTC	4 cut(s)	375, 556, 1049, 1136
PflMI	CCANNNNNTGG	1 cut(s)	1034
PfoI	TCCNGGA	2 cut(s)	361, 676
PkrI	GCNGC	8 cut(s)	202, 331, 358, 526, 529, 936, 1063, 1099
PleI	GAGTC	3 cut(s)	529, 598, 1124
PpsI	GAGTC	3 cut(s)	529, 598, 1124
Psp6I	CCWGG	3 cut(s)	361, 619, 676
PspEI	GGTNACC	1 cut(s)	877
PspGI	CCWGG	3 cut(s)	361, 619, 676
PspN4I	GGNNCC	5 cut(s)	289, 367, 531, 1014, 1026
PspPI	GGNCC	3 cut(s)	419, 806, 1151
PsuI	RGATCY	3 cut(s)	306, 391, 433
RsaI	GTAC	1 cut(s)	858
RsaNI	GTAC	1 cut(s)	857
RseI	CAYNNNNRTG	1 cut(s)	665
SaqAI	TTAA	4 cut(s)	215, 381, 453, 987
SatI	GCNGC	8 cut(s)	201, 330, 357, 525, 528, 935, 1062, 1098
Sau3AI	GATC	8 cut(s)	306, 391, 433, 495, 894, 909, 1117, 1203
Sau96I	GGNCC	3 cut(s)	419, 806, 1151
SchI	GAGTC	3 cut(s)	529, 598, 1124
ScrFI	CCNGG	3 cut(s)	363, 621, 678
SfaNI	GCATC	5 cut(s)	575, 676, 777, 1162, 1177
SfcI	CTRYAG	1 cut(s)	1271
SinI	GGWCC	2 cut(s)	419, 806
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
SsiI	CCGC	8 cut(s)	201, 330, 524, 527, 548, 1046, 1061, 1196
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	3 cut(s)	361, 619, 676
TaaI	ACNGT	7 cut(s)	181, 428, 513, 667, 856, 904, 1104
TaiI	ACGT	2 cut(s)	81, 270
TaqI	TCGA	1 cut(s)	750
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	5 cut(s)	203, 332, 527, 530, 1064
TfiI	GAWTC	4 cut(s)	375, 556, 1049, 1136
Tru1I	TTAA	4 cut(s)	215, 381, 453, 987
Tru9I	TTAA	4 cut(s)	215, 381, 453, 987
TscAI	CASTG	2 cut(s)	672, 907
TseFI	GTSAC	3 cut(s)	79, 311, 1127
TseI	GCWGC	3 cut(s)	356, 934, 1097
Tsp45I	GTSAC	3 cut(s)	79, 311, 1127
TspDTI	ATGAA	3 cut(s)	569, 707, 827
TspGWI	ACGGA	4 cut(s)	299, 404, 462, 1173
TspRI	CASTG	2 cut(s)	672, 907
Van91I	CCANNNNNTGG	1 cut(s)	1034
VpaK11BI	GGWCC	2 cut(s)	419, 806
XagI	CCTNNNNNAGG	1 cut(s)	1146
XmnI	GAANNNNTTC	3 cut(s)	468, 698, 744
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.