Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013021

Physical Location & Seq

Genomic Coordinates Reverse (-)

31772351 .. 31775742

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3303 bp

ATGAAGGTTCTTTATTGGAATATTAGGGGAATAGGAAACAATGACTCCCAATCCGAGCTTTCTAATATTTGCCATATTCACAAACCAGATCTTGTTTGCATTGCTGAGCCAAAGATAAAGTTCACCTCAATTTCAGCAGTTTTTTGGTCTTCTTTGAATTTGGATCTTGTTGCAACTAATGACTGTGGAGCGGCTCTTCCAAATCTTTGGCTGTTGAAGGGTTTTCATATTCCTAATCCGACGATTATTTCCAACTCCGAACAGCAGGTTACAATACAGGTTCCTTTTGATAATGATCCCAGTCAACTTTCTTTTGTATATGCTTCTACCTCTTATATCAAACGCAGGGATTTATGGCAAGATCTTAATGCTCTTCGTCCTCAAACGTCTATCCCTTGGATGGTAATTGGGGACTTCAACGCTGTGTTAGGAGCCCACGAATCAGGAGGCCCATCTCCTTCTCGCCTCTCCTGTGCAGATTTTCAAAGTATGTCAGATACTTGTGATTTTGTTCATCTAGATACTTCTGGTTTGTTCTTTACTTGGTCAAATGGTTGGAGCACCCGTGGACATGTTGAGCTTCGTTTGGACAGATGTCTTTGTGATACCACTTGGTTTGAAGCTTGGCCTTTTACTAGTTGTGTTGCTCTTCCCCGTGTTGTTTCTGATCATTCTCCTTTGATTTTCTCTGCTTCAAAACTCTCCCCAAGTGGTCCCAAGCCTTTCAGGTTTCAGTCTATGTGGTTGCAGCATCCAAATTTTCATGCAGTAGTGTCTAATTGTTGGAATTCCTTTCAACTTTGTGGCTGCCCAATGTTTGTTACTTTGCAGAAATTAAAGGCTTTGAAACATTGTTTGCGTGATTGGAACAAAGCGGTTTTCGGTAATGTCCATCAAAAGGTTGCTGCTGCTCGCGAAAATTTAGTCAACATTCAACAAGATATCGCGACCCGTGGCATGACTGATCAAAGGTTTGAGGATGAGATTGCTGCAAATTGGGTCAGCTCTATTCTTCACTCAGCAAGACTATCTCTTTTAATCAATGGCTCTCCTCAAGGTTTCTTTACGTGTTCTCGTGGTGTTAGACAAGGAGATCCCCTTTCTCCACTTTTATTCTGTCTTGCAGAGGAGGCTCTTAGCCGGGGCCTTCACTTACTTCTCCAAACCCGTCAATTGAAGCCAATATCTTTTCCCAGGAAATGCACTGCACCGTCTCATGTGTTATATGCAGATGACCTCATGGTGTTTTGTCGTGGGGACAAAAACTCTCTTAAACGGCTGCGTGGGTTTTTTGACCGTTATAGTGCAGCTTCAGGGCAATTCATTAATGCGGAGAAAAGTACTTTCTATCTTGGAGCTAGGTCTCGTCACAGGAAAGGTACAGTTCAACGTATATTGGGTTTTCATGCAGGGCGCCTACCTTTTATTTATCTGGGAGTTCCTATTTTTTGTGGAAAACCCCGCAGCTGCCATCTCCAAGTTATTGCCGATAGAGCTAAGTCAAGGTTAATGGGTTGGCAGGGGAGGCTTCTTTCTATGGCTGGGCGTACTCAACTTGTGCAATCTGTTTTTCAAAGTATGCTTCTTCATAGTTTTTCAGTGTATCAATGGCCTGCATACCTTGTGAAGAAGTTATCTACATGGGCGCGTAGTTTTATATGGTCTGGAAATATTGAGACTCGGAAAATTGTCACTGTTACTTGGACTCAAGTTTGTGCTCCGAAAAAAGAGGGCGGGGTTGGTATTCGTGATCTGGCAACTCTTAATTCTGCAGCTGTTTTAAGGTTTGCATGGAGCTCTTTCACTTCTTTGAACCAATGGGGTGATTATATGCGAACTCGTTACCCTATATTATCTAGTTCCAAAGTGAGCTACCGCAAATCCTCAATCTGGCCAGGTTTCCGCTCTATTGCTCTTCATATCACCCACAATTGTCGTTGGATTATTGGAGATGGCCGTTCAGTGTCCTTTTGGAAAGATAAATGGCTTCAAGATCCAATTTTGGAAATGTTGGGTTTTTTCGACTGGTCAGGATTCAGTGATCTACGTGTGGCTGATTTCATCTCAGATCATTCTTGGCAGTTTCCCTCTTTCTTCTTAGATACCTTTCCAGACTTGTACAGGAAAATTTCTGATATTCGTCTCCCTTTAGACACAGAACCTGATATGCTCATTTGGGAGTCTACAGCCTCTGGAGAGTTATCCTTCACTGATTCTTATAACTTGCTTAGACGACACTTTATTTTGAGAGACTGGGCTTCTACTATTTGGCATTCCTTCATTCCTCCACGATTTTCTTTCTTGGCTTGGAGGATTCTCTTAGATCGCTTGCCCACTGATGATCGGCTGAAAAGAGGTGGGATTCCGATTGTGTCCATCTGCCAATTATGCAACAGTTCGGCAGAGTCAGCTTTACACTTATTTTTACACTGCCCTTTCTCCCAACATCTTTGGGGATGGCTGGCAACTCAGTTTGGAACCTCATTTCCTGCTTATGACTCTCTGTTGGATTTTTGGGTTGGCTTTTGTCACAAGGGTTTTTCCCCTCAGCTTTATAATTTGTGGTTGGCAGCTGGATTGCTTACTTTCATGGAAATTTGGAAGGCGCGAAATAGACTCAGGTTTGATAATCGTTCTCCTATTTTTTCTACACTGTGTTGTTCAATTATGGCATGGATTCGGCAATTTGGTTCTCTTGTTCCTGGTTACTACAAAGGCGTCTTGGATTCCCGGCTTCTTTCTTCCCTTGGGGTGTGCCCCAAGCCTCGTAAAGCGCCCAAGATTCAACGTGTCCTATGGCATCCCCCCCTCCCTCCTTGGGTTAAAGTTAACACTGATGGTCTGGCGAAAGGTAATCCTGGTCCTGCAGCTTGTGGAGGAGTTTTTCGCGATGCTTCTGGGGTTTATTTAGGGAGTTTTTGCCAACCTCTGGGTTGCAATACTTCCTTTTATGCTGAACTTTATGCTGTTATTGTGTCTATTGAAGTAGCTTTCACTAGAGGTTGGACTACTCTGTGGTTGGAAAGTGATTCCATTAGTGTATTAGCATCTCTCTCCTCCAATTCTTTCTCTCCTCCATGGGACTTGAGAGTTAGATGGCAAAATTGCTTGAAGAACATTCAACAAATGCAATTTCGTAGAACTCATATTTTTAGGGAAGGGAATGCAGCTGCAGATAAGATGGCAAACTTAGGTGTTTCAAAACACTCATTTACCTGGTATCCTAGCCCTCCTGCAGAGCTTCACAGGTACTTGCAGGCGGATTTTTTGGGACTCCCAAATTATCGCTTCACAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0022622 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

1100

Amino Acids

124.94

Weight (kDa)

9.34

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	4 - 224	7.5e-09	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	310 - 481	2.6e-13	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	736 - 818	1.8e-23	zinc-binding in reverse transcriptase
RVT_3	PF13456	944 - 1064	1.1e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55730 AT5G55730
fragaria_vesca	FvH4_3g29120
malus_domestica	MD03G1179200.v1.1 MD11G1198600.v1.1
prunus_persica	Prupe.4G244100_v2.0.a1
pyrus_communis	pycom03g13520
rosa_chinensis	RchiOBHm_Chr5g0051361 RchiOBHm_Chr5g0053441
rosa_laevigata	RLG00000034881
rosa_multiflora	Rmu_sc0001054.1_g000007
rosa_roxburghii	Rroxscaffold_1G00027000
rosa_rugosa	Rorug05G0279900
rosa_samantha	Rh5AG351000 Rh5BG363300 Rh5CG387700 Rh5DG377900
rosa_wichuraiana	Rw5G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2220, 2556
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	1413
AccB7I	CCANNNNNTGG	1 cut(s)	2929
AccBSI	CCGCTC	2 cut(s)	191, 1905
AccI	GTMKAC	1 cut(s)	2183
AccII	CGCG	5 cut(s)	915, 947, 1648, 2608, 2889
AciI	CCGC	8 cut(s)	191, 875, 1331, 1462, 1734, 1876, 1903, 3260
AclWI	GGATC	4 cut(s)	171, 290, 1088, 1988
AcoI	YGGCCR	2 cut(s)	1892, 1954
AcsI	RAATTY	6 cut(s)	157, 757, 787, 919, 2127, 2595
AcuI	CTGAAG	1 cut(s)	1296
AcyI	GRCGYC	2 cut(s)	1414, 2718
AfaI	GTAC	5 cut(s)	1342, 1381, 1549, 2120, 3251
AfiI	CCNNNNNNNGG	5 cut(s)	400, 898, 1890, 2818, 2929
AflIII	ACRYGT	4 cut(s)	571, 1067, 2047, 2788
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	5 cut(s)	1193, 1894, 2701, 2857, 3215
AloI	GAACNNNNNNTCC	2 cut(s)	2470, 2502
Alw21I	GWGCWC	3 cut(s)	563, 1720, 1799
Alw26I	GTCTC	5 cut(s)	1218, 1368, 1670, 2147, 2244
AlwI	GGATC	4 cut(s)	171, 290, 1088, 1988
AlwNI	CAGNNNCTG	2 cut(s)	2162, 2192
AoxI	GGCC	6 cut(s)	448, 626, 1144, 1610, 1892, 1954
ApoI	RAATTY	6 cut(s)	157, 757, 787, 919, 2127, 2595
ArsI	GACNNNNNNTTYG	2 cut(s)	909, 941
AseI	ATTAAT	1 cut(s)	1326
AspLEI	GCGC	4 cut(s)	1416, 1648, 2608, 2776
AspS9I	GGNCC	4 cut(s)	449, 713, 1144, 2861
AsuC2I	CCSGG	2 cut(s)	1142, 2731
AsuHPI	GGTGA	3 cut(s)	115, 1835, 1915
AvaII	GGWCC	2 cut(s)	713, 2861
BaeGI	GKGCMC	1 cut(s)	2759
BalI	TGGCCA	1 cut(s)	1894
BanI	GGYRCC	1 cut(s)	1413
BanII	GRGCYC	2 cut(s)	436, 1799
BauI	CACGAG	1 cut(s)	1074
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	3 cut(s)	563, 1720, 1799
BbvCI	CCTCAGC	1 cut(s)	2547
BceAI	ACGGC	2 cut(s)	1292, 1941
BciT130I	CCWGG	5 cut(s)	1195, 1896, 2703, 2859, 3217
BciVI	GTATCC	1 cut(s)	3231
BclI	TGATCA	2 cut(s)	667, 964
BcnI	CCSGG	2 cut(s)	1142, 2731
BcoDI	GTCTC	5 cut(s)	1218, 1368, 1670, 2147, 2244
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	6 cut(s)	518, 636, 1359, 1857, 2997, 3225
BfmI	CTRYAG	5 cut(s)	1770, 2184, 2865, 3171, 3234
BfoI	RGCGCY	2 cut(s)	1417, 2777
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	3231
BglII	AGATCT	2 cut(s)	88, 361
BlpI	GCTNAGC	1 cut(s)	105
BmcAI	AGTACT	1 cut(s)	1342
Bme1390I	CCNGG	7 cut(s)	1142, 1195, 1896, 2703, 2731, 2859, 3217
Bme18I	GGWCC	2 cut(s)	713, 2861
BmgT120I	GGNCC	4 cut(s)	449, 713, 1144, 2861
BmiI	GGNNCC	6 cut(s)	282, 433, 715, 1145, 1415, 2479
BmrFI	CCNGG	7 cut(s)	1142, 1195, 1896, 2703, 2731, 2859, 3217
BmrI	ACTGGG	2 cut(s)	294, 2263
BmsI	GCATC	4 cut(s)	760, 2809, 2881, 3056
BmuI	ACTGGG	2 cut(s)	294, 2263
BoxI	GACNNNNGTC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	2214
Bpu10I	CCTNAGC	1 cut(s)	2547
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	3 cut(s)	1038, 1692, 3106
BpuMI	CCSGG	2 cut(s)	1142, 2731
BsaAI	YACGTR	2 cut(s)	1068, 2048
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	2 cut(s)	1414, 2718
BsaI	GGTCTC	1 cut(s)	1368
BsaJI	CCNNGG	8 cut(s)	395, 565, 952, 1141, 1193, 2746, 2816, 3077
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 550, 580
Bsc4I	CCNNNNNNNGG	5 cut(s)	400, 898, 1890, 2818, 2929
Bse1I	ACTGG	3 cut(s)	300, 2030, 2258
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	5 cut(s)	1195, 1896, 2703, 2859, 3217
BseDI	CCNNGG	8 cut(s)	395, 565, 952, 1141, 1193, 2746, 2816, 3077
BseGI	GGATG	5 cut(s)	405, 751, 985, 2462, 2800
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	5 cut(s)	400, 898, 1890, 2818, 2929
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	6 cut(s)	96, 1032, 2079, 2483, 2561, 2632
BseNI	ACTGG	3 cut(s)	300, 2030, 2258
BseRI	GAGGAG	5 cut(s)	1041, 1142, 2892, 3046, 3063
BseSI	GKGCMC	1 cut(s)	2759
BseYI	CCCAGC	1 cut(s)	1541
BsgI	GTGCAG	3 cut(s)	495, 1191, 1326
Bsh1236I	CGCG	5 cut(s)	915, 947, 1648, 2608, 2889
BshFI	GGCC	6 cut(s)	450, 628, 1146, 1612, 1894, 1956
BshNI	GGYRCC	1 cut(s)	1413
BsiHKAI	GWGCWC	3 cut(s)	563, 1720, 1799
BsiSI	CCGG	2 cut(s)	1141, 2731
BslFI	GGGAC	5 cut(s)	425, 699, 1271, 3095, 3285
BslI	CCNNNNNNNGG	5 cut(s)	400, 898, 1890, 2818, 2929
BsmAI	GTCTC	5 cut(s)	1218, 1368, 1670, 2147, 2244
BsmBI	CGTCTC	2 cut(s)	1218, 2147
BsmFI	GGGAC	5 cut(s)	425, 699, 1271, 3095, 3285
BsmI	GAATGC	2 cut(s)	2272, 3169
BsnI	GGCC	6 cut(s)	450, 628, 1146, 1612, 1894, 1956
Bso31I	GGTCTC	1 cut(s)	1368
Bsp1286I	GDGCHC	5 cut(s)	436, 563, 1720, 1799, 2759
Bsp1407I	TGTACA	1 cut(s)	2118
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	3077
Bsp68I	TCGCGA	3 cut(s)	915, 947, 2889
BspACI	CCGC	8 cut(s)	191, 875, 1331, 1462, 1734, 1876, 1903, 3260
BspANI	GGCC	6 cut(s)	450, 628, 1146, 1612, 1894, 1956
BspCNI	CTCAG	6 cut(s)	97, 1031, 2078, 2482, 2560, 2631
BspFNI	CGCG	5 cut(s)	915, 947, 1648, 2608, 2889
BspLI	GGNNCC	6 cut(s)	282, 433, 715, 1145, 1415, 2479
BspMAI	CTGCAG	4 cut(s)	1774, 2869, 3175, 3238
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	4 cut(s)	171, 290, 1088, 1988
BspQI	GCTCTTC	4 cut(s)	201, 378, 654, 1920
BspT107I	GGYRCC	1 cut(s)	1413
BspTNI	GGTCTC	1 cut(s)	1368
BsrBI	CCGCTC	2 cut(s)	191, 1905
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	2118
BsrI	ACTGG	3 cut(s)	300, 2030, 2258
BssECI	CCNNGG	8 cut(s)	395, 565, 952, 1141, 1193, 2746, 2816, 3077
BssNI	GRCGYC	2 cut(s)	1414, 2718
BssSI	CACGAG	1 cut(s)	1074
BssT1I	CCWWGG	4 cut(s)	395, 2746, 2816, 3077
Bst2BI	CACGAG	1 cut(s)	1074
Bst2UI	CCWGG	5 cut(s)	1195, 1896, 2703, 2859, 3217
Bst4CI	ACNGT	7 cut(s)	185, 1212, 1298, 1384, 1696, 2396, 2655
Bst6I	CTCTTC	4 cut(s)	201, 378, 654, 1920
BstACI	GRCGYC	2 cut(s)	1414, 2718
BstAUI	TGTACA	1 cut(s)	2118
BstBAI	YACGTR	2 cut(s)	1068, 2048
BstC8I	GCNNGC	5 cut(s)	913, 1614, 2330, 2463, 3258
BstDSI	CCRYGG	3 cut(s)	565, 952, 3077
BstF5I	GGATG	5 cut(s)	405, 751, 985, 2462, 2800
BstFNI	CGCG	5 cut(s)	915, 947, 1648, 2608, 2889
BstH2I	RGCGCY	2 cut(s)	1417, 2777
BstHHI	GCGC	4 cut(s)	1416, 1648, 2608, 2776
BstMAI	GTCTC	5 cut(s)	1218, 1368, 1670, 2147, 2244
BstMWI	GCNNNNNNNGC	5 cut(s)	1130, 1493, 1525, 2388, 2408
BstNI	CCWGG	5 cut(s)	1195, 1896, 2703, 2859, 3217
BstNSI	RCATGY	1 cut(s)	575
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSCI	CCNGG	7 cut(s)	1140, 1193, 1894, 2701, 2729, 2857, 3215
BstSFI	CTRYAG	5 cut(s)	1770, 2184, 2865, 3171, 3234
BstSLI	GKGCMC	1 cut(s)	2759
BstUI	CGCG	5 cut(s)	915, 947, 1648, 2608, 2889
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	5 cut(s)	88, 163, 361, 1093, 1993
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	5 cut(s)	88, 163, 361, 1093, 1993
BsuI	GTATCC	1 cut(s)	3231
BsuRI	GGCC	6 cut(s)	450, 628, 1146, 1612, 1894, 1956
BtgI	CCRYGG	3 cut(s)	565, 952, 3077
BtgZI	GCGATG	1 cut(s)	2904
BtsCI	GGATG	5 cut(s)	405, 751, 985, 2462, 2800
BtsI	GCAGTG	2 cut(s)	1203, 2428
BtuMI	TCGCGA	3 cut(s)	915, 947, 2889
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	5 cut(s)	913, 1614, 2330, 2463, 3258
CaiI	CAGNNNCTG	2 cut(s)	2162, 2192
CfoI	GCGC	4 cut(s)	1416, 1648, 2608, 2776
Cfr13I	GGNCC	4 cut(s)	449, 713, 1144, 2861
CseI	GACGC	1 cut(s)	2707
CsiI	ACCWGGT	1 cut(s)	3215
Csp6I	GTAC	5 cut(s)	1341, 1380, 1548, 2119, 3250
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviQI	GTAC	5 cut(s)	1341, 1380, 1548, 2119, 3250
DinI	GGCGCC	1 cut(s)	1415
EaeI	YGGCCR	2 cut(s)	1892, 1954
Eam1104I	CTCTTC	4 cut(s)	201, 378, 654, 1920
EarI	CTCTTC	4 cut(s)	201, 378, 654, 1920
EciI	GGCGGA	1 cut(s)	3275
Ecl136II	GAGCTC	1 cut(s)	1797
Eco130I	CCWWGG	4 cut(s)	395, 2746, 2816, 3077
Eco24I	GRGCYC	2 cut(s)	436, 1799
Eco31I	GGTCTC	1 cut(s)	1368
Eco32I	GATATC	1 cut(s)	943
Eco47I	GGWCC	2 cut(s)	713, 2861
Eco53kI	GAGCTC	1 cut(s)	1797
Eco57I	CTGAAG	1 cut(s)	1296
EcoICRI	GAGCTC	1 cut(s)	1797
EcoO109I	RGGNCCY	1 cut(s)	1144
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	5 cut(s)	1193, 1894, 2701, 2857, 3215
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	4 cut(s)	395, 2746, 2816, 3077
EcoT38I	GRGCYC	2 cut(s)	436, 1799
EgeI	GGCGCC	1 cut(s)	1415
EheI	GGCGCC	1 cut(s)	1415
ErhI	CCWWGG	4 cut(s)	395, 2746, 2816, 3077
Esp3I	CGTCTC	2 cut(s)	1218, 2147
FaqI	GGGAC	5 cut(s)	425, 699, 1271, 3095, 3285
FauI	CCCGC	2 cut(s)	1469, 1727
FbaI	TGATCA	2 cut(s)	667, 964
FblI	GTMKAC	1 cut(s)	2183
FokI	GGATG	5 cut(s)	412, 738, 992, 2469, 2787
FriOI	GRGCYC	2 cut(s)	436, 1799
FspBI	CTAG	6 cut(s)	518, 636, 1359, 1857, 2997, 3225
GlaI	GCGC	4 cut(s)	1415, 1647, 2607, 2775
GsaI	CCCAGC	1 cut(s)	1545
GsuI	CTGGAG	1 cut(s)	2214
HaeII	RGCGCY	2 cut(s)	1417, 2777
HaeIII	GGCC	6 cut(s)	450, 628, 1146, 1612, 1894, 1956
HapII	CCGG	2 cut(s)	1141, 2731
HgaI	GACGC	1 cut(s)	2707
HhaI	GCGC	4 cut(s)	1416, 1648, 2608, 2776
Hin1I	GRCGYC	2 cut(s)	1414, 2718
Hin6I	GCGC	4 cut(s)	1414, 1646, 2606, 2774
HinP1I	GCGC	4 cut(s)	1414, 1646, 2606, 2774
HincII	GTYRAC	3 cut(s)	305, 928, 2830
HindII	GTYRAC	3 cut(s)	305, 928, 2830
HindIII	AAGCTT	1 cut(s)	621
HpaI	GTTAAC	1 cut(s)	2830
HpaII	CCGG	2 cut(s)	1141, 2731
HphI	GGTGA	3 cut(s)	115, 1835, 1915
Hpy166II	GTNNAC	6 cut(s)	123, 305, 569, 928, 2184, 2830
Hpy8I	GTNNAC	6 cut(s)	123, 305, 569, 928, 2184, 2830
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	7 cut(s)	211, 468, 1157, 2215, 2287, 2596, 3152
HpyCH4III	ACNGT	7 cut(s)	185, 1212, 1298, 1384, 1696, 2396, 2655
HpyCH4IV	ACGT	5 cut(s)	386, 1067, 1390, 2047, 2788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1130, 1493, 1525, 2388, 2408
HpySE526I	ACGT	5 cut(s)	386, 1067, 1390, 2047, 2788
Hsp92I	GRCGYC	2 cut(s)	1414, 2718
HspAI	GCGC	4 cut(s)	1414, 1646, 2606, 2774
KasI	GGCGCC	1 cut(s)	1413
Ksp22I	TGATCA	2 cut(s)	667, 964
KspAI	GTTAAC	1 cut(s)	2830
LguI	GCTCTTC	4 cut(s)	201, 378, 654, 1920
LmnI	GCTCC	6 cut(s)	188, 431, 558, 1355, 1723, 1794
LweI	GCATC	4 cut(s)	760, 2809, 2881, 3056
MabI	ACCWGGT	1 cut(s)	3215
MaeI	CTAG	6 cut(s)	518, 636, 1359, 1857, 2997, 3225
MaeII	ACGT	5 cut(s)	386, 1067, 1390, 2047, 2788
MaeIII	GTNAC	8 cut(s)	268, 820, 1367, 1690, 1696, 1841, 2528, 2705
MbiI	CCGCTC	2 cut(s)	191, 1905
MfeI	CAATTG	2 cut(s)	1172, 1930
MflI	RGATCY	5 cut(s)	88, 163, 361, 1093, 1993
MhlI	GDGCHC	5 cut(s)	436, 563, 1720, 1799, 2759
MlsI	TGGCCA	1 cut(s)	1894
MluNI	TGGCCA	1 cut(s)	1894
Mly113I	GGCGCC	1 cut(s)	1414
MlyI	GAGTC	8 cut(s)	38, 1672, 1699, 2189, 2414, 2492, 2610, 3267
MmeI	TCCRAC	8 cut(s)	263, 276, 536, 764, 1919, 2487, 2984, 3000
Mox20I	TGGCCA	1 cut(s)	1894
MscI	TGGCCA	1 cut(s)	1894
Msp20I	TGGCCA	1 cut(s)	1894
MspA1I	CMGCKG	4 cut(s)	1467, 1775, 2573, 3170
MspI	CCGG	2 cut(s)	1141, 2731
MspR9I	CCNGG	7 cut(s)	1142, 1195, 1896, 2703, 2731, 2859, 3217
MunI	CAATTG	2 cut(s)	1172, 1930
Mva1269I	GAATGC	2 cut(s)	2272, 3169
MvaI	CCWGG	5 cut(s)	1195, 1896, 2703, 2859, 3217
MvnI	CGCG	5 cut(s)	915, 947, 1648, 2608, 2889
MwoI	GCNNNNNNNGC	5 cut(s)	1130, 1493, 1525, 2388, 2408
NarI	GGCGCC	1 cut(s)	1414
NciI	CCSGG	2 cut(s)	1142, 2731
NcoI	CCATGG	1 cut(s)	3077
NlaIV	GGNNCC	6 cut(s)	282, 433, 715, 1145, 1415, 2479
NmuCI	GTSAC	3 cut(s)	1367, 1690, 2528
NruI	TCGCGA	3 cut(s)	915, 947, 2889
NspI	RCATGY	1 cut(s)	575
PciI	ACATGT	1 cut(s)	571
PciSI	GCTCTTC	4 cut(s)	201, 378, 654, 1920
PctI	GAATGC	2 cut(s)	2272, 3169
PfeI	GAWTC	9 cut(s)	440, 2034, 2213, 2314, 2362, 2677, 2726, 2782, 3029
PflMI	CCANNNNNTGG	1 cut(s)	2929
PleI	GAGTC	8 cut(s)	38, 1672, 1699, 2188, 2413, 2492, 2610, 3267
PluTI	GGCGCC	1 cut(s)	1417
PpsI	GAGTC	8 cut(s)	38, 1672, 1699, 2188, 2413, 2492, 2610, 3267
Ppu21I	YACGTR	2 cut(s)	1068, 2048
PscI	ACATGT	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	594
PshBI	ATTAAT	1 cut(s)	1326
PsiI	TTATAA	2 cut(s)	2220, 2556
Psp124BI	GAGCTC	1 cut(s)	1799
Psp6I	CCWGG	5 cut(s)	1193, 1894, 2701, 2857, 3215
PspFI	CCCAGC	1 cut(s)	1541
PspGI	CCWGG	5 cut(s)	1193, 1894, 2701, 2857, 3215
PspN4I	GGNNCC	6 cut(s)	282, 433, 715, 1145, 1415, 2479
PspPI	GGNCC	4 cut(s)	449, 713, 1144, 2861
PstI	CTGCAG	4 cut(s)	1774, 2869, 3175, 3238
PstNI	CAGNNNCTG	2 cut(s)	2162, 2192
PsuI	RGATCY	5 cut(s)	88, 163, 361, 1093, 1993
PvuII	CAGCTG	4 cut(s)	1467, 1775, 2573, 3170
RruI	TCGCGA	3 cut(s)	915, 947, 2889
RsaI	GTAC	5 cut(s)	1342, 1381, 1549, 2120, 3251
RsaNI	GTAC	5 cut(s)	1341, 1380, 1548, 2119, 3250
SacI	GAGCTC	1 cut(s)	1799
SapI	GCTCTTC	4 cut(s)	201, 378, 654, 1920
Sau96I	GGNCC	4 cut(s)	449, 713, 1144, 2861
ScaI	AGTACT	1 cut(s)	1342
SchI	GAGTC	8 cut(s)	38, 1672, 1699, 2189, 2414, 2492, 2610, 3267
ScrFI	CCNGG	7 cut(s)	1142, 1195, 1896, 2703, 2731, 2859, 3217
SduI	GDGCHC	5 cut(s)	436, 563, 1720, 1799, 2759
SexAI	ACCWGGT	1 cut(s)	3215
SfaNI	GCATC	4 cut(s)	760, 2809, 2881, 3056
SfcI	CTRYAG	5 cut(s)	1770, 2184, 2865, 3171, 3234
SfoI	GGCGCC	1 cut(s)	1415
SinI	GGWCC	2 cut(s)	713, 2861
SmlI	CTYRAG	3 cut(s)	1053, 1707, 3085
SmoI	CTYRAG	3 cut(s)	1053, 1707, 3085
SpeI	ACTAGT	1 cut(s)	635
SsiI	CCGC	8 cut(s)	191, 875, 1331, 1462, 1734, 1876, 1903, 3260
SspDI	GGCGCC	1 cut(s)	1413
SspI	AATATT	3 cut(s)	22, 67, 1672
SspMI	CTAG	6 cut(s)	518, 636, 1359, 1857, 2997, 3225
SstI	GAGCTC	1 cut(s)	1799
StyD4I	CCNGG	7 cut(s)	1140, 1193, 1894, 2701, 2729, 2857, 3215
StyI	CCWWGG	4 cut(s)	395, 2746, 2816, 3077
TaaI	ACNGT	7 cut(s)	185, 1212, 1298, 1384, 1696, 2396, 2655
TaiI	ACGT	5 cut(s)	389, 1070, 1393, 2050, 2791
TaqI	TCGA	1 cut(s)	2022
TatI	WGTACW	2 cut(s)	1340, 2118
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	9 cut(s)	440, 2034, 2213, 2314, 2362, 2677, 2726, 2782, 3029
TseFI	GTSAC	3 cut(s)	1367, 1690, 2528
Tsp45I	GTSAC	3 cut(s)	1367, 1690, 2528
Van91I	CCANNNNNTGG	1 cut(s)	2929
VpaK11BI	GGWCC	2 cut(s)	713, 2861
VspI	ATTAAT	1 cut(s)	1326
XapI	RAATTY	6 cut(s)	157, 757, 787, 919, 2127, 2595
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	2183
XspI	CTAG	6 cut(s)	518, 636, 1359, 1857, 2997, 3225
ZrmI	AGTACT	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.